mRNA_H-paniculata_contig5297.12685.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5297.12685.1
Unique NamemRNA_H-paniculata_contig5297.12685.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5297.12685.1 vs. uniprot
Match: A0A6H5LKZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKZ1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.450e-6
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:    2 EEGGTEEARVEPAGERSEGGEGDMIPDEIIDMAKESAAYEDVSGVITAVYATRYGNHPNEKNALTSPPAWVRQLASISRAA 244
            EEGG E   VE A         DM P++++ +AKE   YEDVSGVITAVYA RYG     K    + P WVRQ+AS++R A
Sbjct:  520 EEGGEEXXEVEAAAVAVR----DM-PEDVLKVAKECVVYEDVSGVITAVYAARYGTDAAGK--APAVPLWVRQMASLARLA 593
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5297.12685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LKZ1_9PHAE6.450e-649.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5297contigH-paniculata_contig5297:2745..5586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size991
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5297.12685.1prot_H-paniculata_contig5297.12685.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5297 2815..5223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.9428318-UTR-H-paniculata_contig5297:2744..28141622930533.9428318-UTR-H-paniculata_contig5297:2744..2814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5297 2745..2814 +
1691481336.698518-UTR-H-paniculata_contig5297:2744..28141691481336.698518-UTR-H-paniculata_contig5297:2744..2814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5297 2745..2814 +
1622930533.991105-UTR-H-paniculata_contig5297:5223..55861622930533.991105-UTR-H-paniculata_contig5297:5223..5586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5297 5224..5586 +
1691481336.7326267-UTR-H-paniculata_contig5297:5223..55861691481336.7326267-UTR-H-paniculata_contig5297:5223..5586Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5297 5224..5586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.9603503-CDS-H-paniculata_contig5297:2814..29031622930533.9603503-CDS-H-paniculata_contig5297:2814..2903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 2815..2903 +
1691481336.7088196-CDS-H-paniculata_contig5297:2814..29031691481336.7088196-CDS-H-paniculata_contig5297:2814..2903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 2815..2903 +
1622930533.9735644-CDS-H-paniculata_contig5297:4754..52231622930533.9735644-CDS-H-paniculata_contig5297:4754..5223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 4755..5223 +
1691481336.7228792-CDS-H-paniculata_contig5297:4754..52231691481336.7228792-CDS-H-paniculata_contig5297:4754..5223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 4755..5223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5297.12685.1

>prot_H-paniculata_contig5297.12685.1 ID=prot_H-paniculata_contig5297.12685.1|Name=mRNA_H-paniculata_contig5297.12685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MIPDEIIDMAKESAAYEDVSGVITAVYATRYGNHPNEKNALTSPPAWVRQ
LASISRAASSRADNAQAEAAADVPGAEGVAHMYSTNDDTTGEGSLRGRGS
GSGSGGGGGGSVRGGGCWGWRRPAIVVQRRWATAGCDVDVRGGGGGGVSV
RYWQSSRDGRSGSHGVERCGAFRLRRLGSGRAYGR*
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mRNA from alignment at H-paniculata_contig5297:2745..5586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5297.12685.1 ID=mRNA_H-paniculata_contig5297.12685.1|Name=mRNA_H-paniculata_contig5297.12685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2842bp|location=Sequence derived from alignment at H-paniculata_contig5297:2745..5586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGAGGGTGGAACGGAGGAAGCGCGGGTAGAGCCTGCGGGTGAGAGGA
GCGAGGGCGGGGAGGGTGATATGATTCCAGATGAAATTATAGACATGGCT
AAGGAGAGTGCTGCGTACGAGGACGTAAGTGGGGTCATCACAGCGGTCTA
CGCCACCAGGTGCGTCCTTTGGCAATATAGTTATCACCGGTACGTGTGCT
TCATGTTGAGAGGATGGCACTGTTTATTTATCACCTTGAAATGAAGTGTT
TGCCCCTTGAAGTCGTGTTGTGTGGAATGTATCGGCTGTATGTGTGTGTA
TTGTAGGTGTCGTTGAGCGCGTGTTATTTGGTATGTGGATGCCTTTACGT
ATGTGTTGTTCAGTAGGCTGTGTACGTGTCGACATGAAGCCCGCGTTCCG
CCCACCACCAGCGTAAACTTGTCTAGATCCGACATGTTTTTGCGTTATCC
ACGTCTTATAGCTTTCCCCTCCTTACGTTAAGCCGCGGGAGTAGACCCCA
ACGATTGATATCCACACAAATATACACCCATGTATATATATATATATATA
ATTGACTGAAAACAACACTGCGAAGGTAGCTTGGAAACTCTTGGCATTTC
TTGTGCTTGTTTTATTTTATTAGTTTTTTTGGTGGTTGTTAGAGCCCGGC
TATTGCCAATGCAGTCAGTGGTGTTTTCGTTACCATTCCTTAGCTAGATT
TACAACGGCTTGCTGCGCCTGAGAGGGCCTGTCTGCTTTGCTCGTAGTGG
GCGAGAACATTGGCTATCTTCCAATCCTTGTGAAACAAGACTTGCTGGAG
TTCTTTGTTGTGGAAAAGACAGCCGAAGATACGAAAGCTCTTAGATGAAT
GACGTATTAAAGAGTTGTTCCAAAACGACTAGAGGTTTACCCAACCAAGA
TAAAACAAAGAGAAGTGTACGCGTCGTTGTCATTTTCCAGTAATTTCGAG
AGGTACACGTGAAGTTTTGGGGCGATGAGCGAATGATGAATACCGAGATT
TGTTTCATTGGTTGTGCATATGTGTGTATTTTTTTTCTTGTTCGTGAGAT
GTGGACTCTGTAGTGATTTTAAGTATTTCACAATGCGCTCATTTCCTTAA
AATATCAGGTCCCAACTCTCGAAGTTCGGATAAGAAAAACCCCGTAAGTA
ATAATGTTTTTAGACAATGCGGTCTTAGTATCGTTTATATAGACGAAAAA
TTAGTGAAACACCTACAAAATTGGAACGGAAGAGCACACAAAAAAAAAAA
AAAAAAAATGGCCAACGCCGCCGTATGCATGACGTATTTATCCCCTCGAA
ATTTTCAAGTAAAAAAATGCCAAAATTTGAATGAGAATGACCCGTTGAAG
GTTACGTAGTATGCCCGTCCTAGTATTTTGTACATGTTTTTCCCAATTTC
GTGCAGGTTATAACTTTTGAACGTCGATATATTGGGAATTAAGACAAGTT
TATTTGTTATCTCGCTGTAGTTTTCGGCGATACGCACGTGAAGTTTCAGG
GGAATTGGGCACGAATTCAATTGTCATAAATTTTTTGTACCAAAGTTACC
CATAGTGGCCGCTAACCGACTGTAGACGGTGTAGGAATTATAGGGTAGAC
TTACGAAAGTATCCGACTGGCCGATCCGAGAGCGTGGTGCACTCCGGGGT
GCTTCCAGGGTTGGAGGGAACCCCGCATTTGGTGTGGAGAATGTATTGGT
TCGTGCTGTTTGGCCCGCCGAGTGTTATTGGCCTGTCTTTCTGGGGCCAG
CTTGTATCAACCAGGCACGGCAACGAAATACTGGACGCTCTTTAGCTCCA
AGGAGTTAGATCTGTTGTTAACACACCTTTGGGCAGTTTAATTTGATATG
CATAGGTGGCTATCAACCATGGAATACGCGATCCCCTCGGCGCTAAGCGT
TGTTTTTAGTAACGGTGTTGTTAGTGACGATGAACGCAAATCTAATGTTC
ACCGACGACCGTGCATGAAGTATCCGCACAAAAATCTCCCTAAAAAACAA
AAAAAAACAGGTACGGCAACCACCCGAACGAGAAAAACGCCTTGACTAGC
CCCCCCGCCTGGGTACGCCAGTTGGCCTCCATCTCACGCGCTGCCAGCAG
CCGTGCAGACAATGCACAAGCAGAGGCTGCCGCCGACGTTCCAGGCGCCG
AAGGCGTAGCGCACATGTATTCAACCAACGATGACACCACCGGCGAAGGC
AGTCTTCGAGGACGCGGCAGCGGCAGTGGCAGCGGCGGCGGGGGTGGTGG
TAGCGTACGAGGCGGAGGGTGCTGGGGCTGGCGTCGCCCGGCAATAGTGG
TGCAAAGGAGATGGGCGACGGCGGGGTGTGATGTAGACGTGCGTGGCGGC
GGCGGTGGCGGTGTTAGCGTGCGCTACTGGCAATCCTCGAGGGACGGGAG
GAGTGGGAGCCATGGGGTCGAACGTTGTGGTGCTTTTCGTTTGCGGCGGT
TGGGGAGTGGACGAGCGTATGGGCGATGAACCAAGTTTAGAGCGAAATGA
AGCACTGGGCGGTCAGGAAGGCATGGGTAGATGGATGGCGTGTTTCTTCG
TTGGTGGATGTTCGAACAATCAGATAGATAGAGGGTGGGTGTGTTGTTAG
GTTGGTTGACTTTGTCCCATGGTTTGGGGCGGTAGAGAGAGCTACAGCAG
CGCTATGAGAGTTGGTAATGCCTGGCAGTGATGGCGACCTTCAGGTGATG
TAGGCCGCACGGGGTTTTCGTGTATTTCGTGTCTGTGGTGTTGGTTTCGT
GTGGTGTTGGTTGTGTGTGTGTGCGTGTTACGGGGAAGACTTGGAAGTGA
CGCGGACGAGGCAGCTCCGTTATGTCGCTGTGGTGGGAGCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5297:2745..5586+

>mRNA_H-paniculata_contig5297.12685.1 ID=mRNA_H-paniculata_contig5297.12685.1|Name=mRNA_H-paniculata_contig5297.12685.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig5297:2745..5586+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCCAGATGAAATTATAGACATGGCTAAGGAGAGTGCTGCGTACGA
GGACGTAAGTGGGGTCATCACAGCGGTCTACGCCACCAGATGATTCCAGA
TGAAATTATAGACATGGCTAAGGAGAGTGCTGCGTACGAGGACGTAAGTG
GGGTCATCACAGCGGTCTACGCCACCAGGTACGGCAACCACCCGAACGAG
AAAAACGCCTTGACTAGCCCCCCCGCCTGGGTACGCCAGTTGGCCTCCAT
CTCACGCGCTGCCAGCAGCCGTGCAGACAATGCACAAGCAGAGGCTGCCG
CCGACGTTCCAGGCGCCGAAGGCGTAGCGCACATGTATTCAACCAACGAT
GACACCACCGGCGAAGGCAGTCTTCGAGGACGCGGCAGCGGCAGTGGCAG
CGGCGGCGGGGGTGGTGGTAGCGTACGAGGCGGAGGGTGCTGGGGCTGGC
GTCGCCCGGCAATAGTGGTGCAAAGGAGATGGGCGACGGCGGGGTGTGAT
GTAGACGTGCGTGGCGGCGGCGGTGGCGGTGTTAGCGTGCGCTACTGGCA
ATCCTCGAGGGACGGGAGGAGTGGGAGCCATGGGGTCGAACGTTGTGGTG
CTTTTCGTTTGCGGCGGTTGGGGAGTGGACGAGCGTATGGGCGATGAGTA
CGGCAACCACCCGAACGAGAAAAACGCCTTGACTAGCCCCCCCGCCTGGG
TACGCCAGTTGGCCTCCATCTCACGCGCTGCCAGCAGCCGTGCAGACAAT
GCACAAGCAGAGGCTGCCGCCGACGTTCCAGGCGCCGAAGGCGTAGCGCA
CATGTATTCAACCAACGATGACACCACCGGCGAAGGCAGTCTTCGAGGAC
GCGGCAGCGGCAGTGGCAGCGGCGGCGGGGGTGGTGGTAGCGTACGAGGC
GGAGGGTGCTGGGGCTGGCGTCGCCCGGCAATAGTGGTGCAAAGGAGATG
GGCGACGGCGGGGTGTGATGTAGACGTGCGTGGCGGCGGCGGTGGCGGTG
TTAGCGTGCGCTACTGGCAATCCTCGAGGGACGGGAGGAGTGGGAGCCAT
GGGGTCGAACGTTGTGGTGCTTTTCGTTTGCGGCGGTTGGGGAGTGGACG
AGCGTATGGGCGATGA
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