mRNA_H-paniculata_contig5296.12683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5296.12683.1
Unique NamemRNA_H-paniculata_contig5296.12683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5296.12683.1 vs. uniprot
Match: D7FNF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF1_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 7.910e-100
Identity = 156/250 (62.40%), Postives = 196/250 (78.40%), Query Frame = 1 
Query:    1 YLVGGSLWLINVMGLEIFAGVPQLETATPIPLLLLGAGLANTLSAIPMANTRSWVLQGLGISLIQLWMAWYVSGAYPASLAVADPWLAAASLAIIVIGGVEAEEAIASDARAKKLVRASGGQWLRRGKVTMRRGDENEGAAINRFGSYANLIFNGPHLYAILVGGGWLDRLAAEYPDTPALLFHGYFALATGSSLALLAPTLYARKLIDAKTMLAMQFLTAAPLVSSLVDATVMGSTATNNPLDIYLGFL 750
            Y+ GGSL+L+ V+G+E+F G PQL+T + +PL +LG G  NT S+IPMANTRSWVL GL +S +QLW AWYVSGAYPASLA ADPWLAAA+L+++VI  VEAEE I ++ R ++++   G +  R GK+ +R  D  EG A+NR GSY +LIFN PHLYA LVG GW++RL   +PD+PALLFH Y ALAT +S+A LAPTLY R+LIDAK M +MQFLT AP V SL+DA+VMG+ ATNNP+DIYLGFL
Sbjct:  199 YIAGGSLYLLGVIGMELFTGTPQLDTTSALPLCVLGFGALNTFSSIPMANTRSWVLSGLCLSTMQLWNAWYVSGAYPASLAPADPWLAAANLSLLVIACVEAEEQILAEKRQREILAQKGRR--RTGKIHIRGDDHVEGDAMNRAGSYGSLIFNAPHLYATLVGSGWVERLGEAFPDSPALLFHAYVALATSTSIAFLAPTLYQRRLIDAKMMSSMQFLTFAPAVMSLIDASVMGAAATNNPIDIYLGFL 446
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BLAST of mRNA_H-paniculata_contig5296.12683.1 vs. uniprot
Match: A0A0G4EV39_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EV39_VITBC)

HSP 1 Score: 105 bits (261), Expect = 1.690e-22
Identity = 90/267 (33.71%), Postives = 133/267 (49.81%), Query Frame = 1 
Query:    1 YLVGGSLWLINVM-----GLEIFAGVPQ---LETATPIPLLLLGAGLANTLSAIPM------ANTRSWVLQGLGISLIQLWMAWYVSGAYPASLAVADPWLAAASLAIIVIGGVEAEEAIASDARAKKLVRASGGQWLRRGKVTMRRGDEN-EGAAINRFGSYANLIFNGPHLYAILVGGG-WLDRLAAEYPDTPALLFHGYFALATGSSLALLAPTLYARKLIDAKTMLAMQFLTAAPLVSSLVDATVMG-STATNNPLDIYLGFL 750
            Y+  G LW +  M     GL+     P    L  A  + + LL  G+ N +S  PM      A +  +   G+G++L+ +W A +VSG YP SL  A   + A  L +I+ G   AE A+ SD     L   S    L R +      +   E   I+R  SY NL+   P L+ +LVGG  WLDR+   +P    LL+H  F +A  +++  L  TL  RKL+ ++  +A+Q +  AP  S++VD  V G  T + NPLD+Y GF+
Sbjct:  158 YIGLGGLWFLWEMVGPSLGLQQLVPPPSPYDLWQADALSVALLLVGVLNCVSCAPMSKHMSPAKSEGFEGLGVGMTLLGVWEALWVSGFYPPSLEWATDGIGAVFLFMILRGIYTAERALESD-----LAMISAKYALGRIRTPGAFAEARLESMVIHRIASYPNLLHT-PILWNMLVGGREWLDRVLDTFPAESILLYHAAFGMALANAIVFLGATLQHRKLMTSRQWIALQLVVLAPFWSTVVDCLVYGPETVSVNPLDMYAGFI 418
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BLAST of mRNA_H-paniculata_contig5296.12683.1 vs. uniprot
Match: F0YC96_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC96_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 3.470e-13
Identity = 86/282 (30.50%), Postives = 129/282 (45.74%), Query Frame = 1 
Query:    1 YLVGGSLWLI--NVMGLEIFAGVPQLETATPIPLLLLGAGLANTLSAIPMANTRS-------------WVLQGLGISLIQLWMAWYVSGAYPASLAVADP--WLAAASLA--------IIVIGGVEAEEAIASDARAKKLVRASGGQW--LRRGKVTMRRGDENEGAAINRFGSYANL---IFNGPHLYAILVGGG--WLDRLAAEYPDTPALLFHGYFALATGSSLALLAPTLYARKLIDAKTMLAMQFLTA-APLVSSLVDATVMGSTATNNPLDIYLGF 747
            +LVG  LWL+  +         V       P+   LL AG+AN L+AIPMA   S             +   G G++L+ +W+A + SG YPA+L  A P  +L  AS+         I++    EA E       A K +   GG+   L R   T    + NE A + R  S+ NL   +F    LY++ +     W   +   YP+   L +H  FA A G +L++ + TL  RKL+  +  L +  +    P+VS  +D  ++G T T NPLD +  F
Sbjct:  144 FLVGAPLWLLYSHATAAGHLDAVATWRFDGPLETSLLVAGVANALTAIPMARFSSNKMFDVTDLKANGFTFGGAGLTLMSIWIAAWFSGGYPAALLPAGPAFFLLWASVCAGTTLNWEIMLQQNFEAAE------EANKEMATRGGRKTDLERKFKTATPEELNEKAILYRLASWPNLTQLLF----LYSLCLPDAAMWWAGVVERYPNQGVLGYHYGFASAVGYALSMFSETLRDRKLVSLRVDLIILVVGVFLPMVSVGLDGVLLGDTVTVNPLDYWRQF 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5296.12683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNF1_ECTSI7.910e-10062.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4EV39_VITBC1.690e-2233.71Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
F0YC96_AURAN3.470e-1330.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5296contigH-paniculata_contig5296:8980..9735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.1
Seed ortholog evalue1.2e-79
Seed eggNOG ortholog2880.D7FNF1
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EG3I@1,2SM4Z@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_005670.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size756
Cds size756
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.8259726-CDS-H-paniculata_contig5296:8979..97351622930533.8259726-CDS-H-paniculata_contig5296:8979..9735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 8980..9735 -
1691481336.6668694-CDS-H-paniculata_contig5296:8979..97351691481336.6668694-CDS-H-paniculata_contig5296:8979..9735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 8980..9735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5296.12683.1prot_H-paniculata_contig5296.12683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5296 8980..9735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5296.12683.1

>prot_H-paniculata_contig5296.12683.1 ID=prot_H-paniculata_contig5296.12683.1|Name=mRNA_H-paniculata_contig5296.12683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
YLVGGSLWLINVMGLEIFAGVPQLETATPIPLLLLGAGLANTLSAIPMAN
TRSWVLQGLGISLIQLWMAWYVSGAYPASLAVADPWLAAASLAIIVIGGV
EAEEAIASDARAKKLVRASGGQWLRRGKVTMRRGDENEGAAINRFGSYAN
LIFNGPHLYAILVGGGWLDRLAAEYPDTPALLFHGYFALATGSSLALLAP
TLYARKLIDAKTMLAMQFLTAAPLVSSLVDATVMGSTATNNPLDIYLGFL
S*
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mRNA from alignment at H-paniculata_contig5296:8980..9735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5296.12683.1 ID=mRNA_H-paniculata_contig5296.12683.1|Name=mRNA_H-paniculata_contig5296.12683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at H-paniculata_contig5296:8980..9735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCTCGTCGGCGGCAGTCTATGGCTAATCAATGTGATGGGCCTCGAGAT
ATTTGCCGGTGTACCGCAGCTAGAAACGGCCACGCCCATTCCCCTTCTCT
TACTAGGGGCCGGTCTCGCCAACACGCTGAGCGCGATCCCGATGGCGAAC
ACGCGTAGCTGGGTGTTGCAAGGCCTCGGCATTTCTCTCATCCAACTGTG
GATGGCCTGGTATGTGTCCGGGGCATACCCGGCCTCCCTAGCCGTGGCGG
ACCCTTGGCTCGCCGCTGCTTCGCTCGCCATCATTGTGATCGGAGGGGTA
GAGGCAGAAGAAGCCATAGCCAGCGACGCGCGTGCCAAGAAGCTCGTGCG
CGCTTCCGGGGGACAATGGCTGAGGCGCGGGAAAGTCACGATGCGCAGAG
GGGATGAAAACGAAGGGGCTGCGATCAACAGGTTCGGGAGTTATGCTAAC
TTGATCTTTAACGGGCCGCATCTATACGCGATCCTAGTGGGTGGAGGGTG
GCTGGACCGCCTTGCTGCAGAATATCCCGACACTCCGGCTTTACTGTTTC
ACGGGTACTTCGCGCTGGCAACGGGAAGCTCGTTGGCCCTGCTCGCCCCG
ACTCTTTACGCTCGAAAACTGATCGATGCCAAAACCATGCTCGCAATGCA
GTTTCTGACGGCGGCTCCACTGGTCAGTAGTCTGGTGGACGCCACCGTTA
TGGGATCAACTGCCACAAACAACCCTCTGGATATCTATCTGGGTTTTCTA
TCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5296:8980..9735-

>mRNA_H-paniculata_contig5296.12683.1 ID=mRNA_H-paniculata_contig5296.12683.1|Name=mRNA_H-paniculata_contig5296.12683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig5296:8980..9735- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATCTCGTCGGCGGCAGTCTATGGCTAATCAATGTGATGGGCCTCGAGAT
ATTTGCCGGTGTACCGCAGCTAGAAACGGCCACGCCCATTCCCCTTCTCT
TACTAGGGGCCGGTCTCGCCAACACGCTGAGCGCGATCCCGATGGCGAAC
ACGCGTAGCTGGGTGTTGCAAGGCCTCGGCATTTCTCTCATCCAACTGTG
GATGGCCTGGTATGTGTCCGGGGCATACCCGGCCTCCCTAGCCGTGGCGG
ACCCTTGGCTCGCCGCTGCTTCGCTCGCCATCATTGTGATCGGAGGGGTA
GAGGCAGAAGAAGCCATAGCCAGCGACGCGCGTGCCAAGAAGCTCGTGCG
CGCTTCCGGGGGACAATGGCTGAGGCGCGGGAAAGTCACGATGCGCAGAG
GGGATGAAAACGAAGGGGCTGCGATCAACAGGTTCGGGAGTTATGCTAAC
TTGATCTTTAACGGGCCGCATCTATACGCGATCCTAGTGGGTGGAGGGTG
GCTGGACCGCCTTGCTGCAGAATATCCCGACACTCCGGCTTTACTGTTTC
ACGGGTACTTCGCGCTGGCAACGGGAAGCTCGTTGGCCCTGCTCGCCCCG
ACTCTTTACGCTCGAAAACTGATCGATGCCAAAACCATGCTCGCAATGCA
GTTTCTGACGGCGGCTCCACTGGTCAGTAGTCTGGTGGACGCCACCGTTA
TGGGATCAACTGCCACAAACAACCCTCTGGATATCTATCTGGGTTTTCTA
TCCTGATATCTCGTCGGCGGCAGTCTATGGCTAATCAATGTGATGGGCCT
CGAGATATTTGCCGGTGTACCGCAGCTAGAAACGGCCACGCCCATTCCCC
TTCTCTTACTAGGGGCCGGTCTCGCCAACACGCTGAGCGCGATCCCGATG
GCGAACACGCGTAGCTGGGTGTTGCAAGGCCTCGGCATTTCTCTCATCCA
ACTGTGGATGGCCTGGTATGTGTCCGGGGCATACCCGGCCTCCCTAGCCG
TGGCGGACCCTTGGCTCGCCGCTGCTTCGCTCGCCATCATTGTGATCGGA
GGGGTAGAGGCAGAAGAAGCCATAGCCAGCGACGCGCGTGCCAAGAAGCT
CGTGCGCGCTTCCGGGGGACAATGGCTGAGGCGCGGGAAAGTCACGATGC
GCAGAGGGGATGAAAACGAAGGGGCTGCGATCAACAGGTTCGGGAGTTAT
GCTAACTTGATCTTTAACGGGCCGCATCTATACGCGATCCTAGTGGGTGG
AGGGTGGCTGGACCGCCTTGCTGCAGAATATCCCGACACTCCGGCTTTAC
TGTTTCACGGGTACTTCGCGCTGGCAACGGGAAGCTCGTTGGCCCTGCTC
GCCCCGACTCTTTACGCTCGAAAACTGATCGATGCCAAAACCATGCTCGC
AATGCAGTTTCTGACGGCGGCTCCACTGGTCAGTAGTCTGGTGGACGCCA
CCGTTATGGGATCAACTGCCACAAACAACCCTCTGGATATCTATCTGGGT
TTTCTATCCTGA
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