prot_H-paniculata_contig5296.12682.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5296.12682.1
Unique Nameprot_H-paniculata_contig5296.12682.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length54
Homology
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.960e-20
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 EEYSSPDGTFALQYPMTFK------------VNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 54
            EEY+SPDG+FAL+YP+ FK            VNFKSEE++GYEVGVA+DPV+IESLE FGTP EVG
Sbjct:  122 EEYASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVG 187          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.530e-19
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 EEYSSPDGTFALQYPMTFK------------VNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 54
            EEY+SPDG+FAL+YP+ FK            VNFKSEE++GYEVGVA+DPV+IESLE FGTP EVG
Sbjct: 1987 EEYASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVG 2052          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.300e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    3 YSSPDGTFALQYPMTFK------------VNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 54
            Y++ DG+F+ +YP  FK            VN+KS   RGYE+GVAVDPV+I SL++FG+  EVG
Sbjct:    6 YTAQDGSFSFRYPGDFKAYSKLLKTHKQEVNYKSPTARGYEIGVAVDPVRINSLDQFGSAQEVG 69          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A7S2WW61_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW61_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.440e-9
Identity = 30/65 (46.15%), Postives = 36/65 (55.38%), Query Frame = 0
Query:    2 EYSSPDGTFALQYPMTF------------KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 54
            E  + DGT+   YP  F            +VN KSE +RGY  G+AVDP+KI SLE FG P  VG
Sbjct:   75 ELRAEDGTYEFSYPAGFAVTSKPLKTHLVEVNVKSEAVRGYSAGLAVDPIKIPSLEAFGDPTTVG 139          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 2.700e-8
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0
Query:   19 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 54
            ++N+KS EI+GY VGVAVDPVKI+SL  FGTP+ VG
Sbjct:    6 EINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVG 41          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A7R9WT23_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT23_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.390e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0
Query:   19 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEV 53
            +VNF S+  +GY+ G+ VDPV+IESL++FGTP EV
Sbjct:  171 EVNFVSDTTKGYQYGITVDPVRIESLKQFGTPEEV 205          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: W7TH67_9STRA (Photosystem II PsbP, oxygen evolving complex n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH67_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.060e-5
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0
Query:    4 SSPDGTFALQYPMTF------------KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 54
            +S  G F   YP T+            +V  KS+ + G+  GVAVDPV+IES+++ G+P+EVG
Sbjct:  115 ASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVG 177          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: B8BUT9_THAPS (PsbP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUT9_THAPS)

HSP 1 Score: 48.1 bits (113), Expect = 5.320e-5
Identity = 17/35 (48.57%), Postives = 29/35 (82.86%), Query Frame = 0
Query:   19 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEV 53
            ++NF   ++RGY +G+ VDPV+I+++++FGTP EV
Sbjct:  140 EINFSPPDVRGYTLGITVDPVRIKTIQEFGTPEEV 174          
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A7S1YMP8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YMP8_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.980e-5
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 0
Query:   19 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEV 53
            ++NF   ++RGY +GV VDPV+I S++ FGTP E+
Sbjct:   58 EINFSIPDVRGYTLGVTVDPVRIASIKDFGTPEEI 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FNF2_ECTSI7.960e-2065.15Similar to photosystem II oxygen evolving complex ... [more]
A0A6H5JQE7_9PHAE4.530e-1965.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB55_9STRA4.300e-1148.44PsbP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2WW61_9STRA9.440e-946.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4EN49_VITBC2.700e-869.44PsbP domain-containing protein n=1 Tax=Vitrella br... [more]
A0A7R9WT23_9STRA8.390e-660.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
W7TH67_9STRA2.060e-539.68Photosystem II PsbP, oxygen evolving complex n=1 T... [more]
B8BUT9_THAPS5.320e-548.57PsbP domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1YMP8_9STRA8.980e-551.43Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 2..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5296contigH-paniculata_contig5296:2405..4605 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5296.12682.1mRNA_H-paniculata_contig5296.12682.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5296 2405..4607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5296.12682.1 ID=prot_H-paniculata_contig5296.12682.1|Name=mRNA_H-paniculata_contig5296.12682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
EEYSSPDGTFALQYPMTFKVNFKSEEIRGYEVGVAVDPVKIESLEKFGTP
NEVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand