mRNA_H-paniculata_contig5296.12682.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5296.12682.1
Unique NamemRNA_H-paniculata_contig5296.12682.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 7.960e-20
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 EEYSSPDGTFALQYPMTFK------------VNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 162
            EEY+SPDG+FAL+YP+ FK            VNFKSEE++GYEVGVA+DPV+IESLE FGTP EVG
Sbjct:  122 EEYASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVG 187
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.530e-19
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 EEYSSPDGTFALQYPMTFK------------VNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 162
            EEY+SPDG+FAL+YP+ FK            VNFKSEE++GYEVGVA+DPV+IESLE FGTP EVG
Sbjct: 1987 EEYASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVG 2052
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.300e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    7 YSSPDGTFALQYPMTFK------------VNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 162
            Y++ DG+F+ +YP  FK            VN+KS   RGYE+GVAVDPV+I SL++FG+  EVG
Sbjct:    6 YTAQDGSFSFRYPGDFKAYSKLLKTHKQEVNYKSPTARGYEIGVAVDPVRINSLDQFGSAQEVG 69
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A7S2WW61_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW61_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.440e-9
Identity = 30/65 (46.15%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    4 EYSSPDGTFALQYPMTF------------KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 162
            E  + DGT+   YP  F            +VN KSE +RGY  G+AVDP+KI SLE FG P  VG
Sbjct:   75 ELRAEDGTYEFSYPAGFAVTSKPLKTHLVEVNVKSEAVRGYSAGLAVDPIKIPSLEAFGDPTTVG 139
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 2.700e-8
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   55 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 162
            ++N+KS EI+GY VGVAVDPVKI+SL  FGTP+ VG
Sbjct:    6 EINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVG 41
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A7R9WT23_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT23_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.390e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   55 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEV 159
            +VNF S+  +GY+ G+ VDPV+IESL++FGTP EV
Sbjct:  171 EVNFVSDTTKGYQYGITVDPVRIESLKQFGTPEEV 205
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: W7TH67_9STRA (Photosystem II PsbP, oxygen evolving complex n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH67_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.060e-5
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   10 SSPDGTFALQYPMTF------------KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEVG 162
            +S  G F   YP T+            +V  KS+ + G+  GVAVDPV+IES+++ G+P+EVG
Sbjct:  115 ASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVG 177
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: B8BUT9_THAPS (PsbP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUT9_THAPS)

HSP 1 Score: 48.1 bits (113), Expect = 5.320e-5
Identity = 17/35 (48.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   55 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEV 159
            ++NF   ++RGY +G+ VDPV+I+++++FGTP EV
Sbjct:  140 EINFSPPDVRGYTLGITVDPVRIKTIQEFGTPEEV 174
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BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Match: A0A7S1YMP8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YMP8_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.980e-5
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   55 KVNFKSEEIRGYEVGVAVDPVKIESLEKFGTPNEV 159
            ++NF   ++RGY +GV VDPV+I S++ FGTP E+
Sbjct:   58 EINFSIPDVRGYTLGVTVDPVRIASIKDFGTPEEI 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5296.12682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FNF2_ECTSI7.960e-2065.15Similar to photosystem II oxygen evolving complex ... [more]
A0A6H5JQE7_9PHAE4.530e-1965.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB55_9STRA4.300e-1148.44PsbP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2WW61_9STRA9.440e-946.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4EN49_VITBC2.700e-869.44PsbP domain-containing protein n=1 Tax=Vitrella br... [more]
A0A7R9WT23_9STRA8.390e-660.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
W7TH67_9STRA2.060e-539.68Photosystem II PsbP, oxygen evolving complex n=1 T... [more]
B8BUT9_THAPS5.320e-548.57PsbP domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1YMP8_9STRA8.980e-551.43Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5296contigH-paniculata_contig5296:2405..4607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue7.5e-16
Seed eggNOG ortholog2880.D7FNF2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.PsbP
EggNOG OGs2E2MJ@1,2S9US@2759
Ec32 ortholog descriptionSimilar to photosystem II oxygen evolving complex protein PsbP in Synechococcus
Ec32 orthologEc-01_005660.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size165
Cds size162
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5296.12682.1prot_H-paniculata_contig5296.12682.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5296 2405..4605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.7472858-CDS-H-paniculata_contig5296:2404..24611622930533.7472858-CDS-H-paniculata_contig5296:2404..2461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 2405..2461 +
1691481336.636134-CDS-H-paniculata_contig5296:2404..24611691481336.636134-CDS-H-paniculata_contig5296:2404..2461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 2405..2461 +
1622930533.771635-CDS-H-paniculata_contig5296:3221..32691622930533.771635-CDS-H-paniculata_contig5296:3221..3269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 3222..3269 +
1691481336.6474319-CDS-H-paniculata_contig5296:3221..32691691481336.6474319-CDS-H-paniculata_contig5296:3221..3269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 3222..3269 +
1622930533.7870648-CDS-H-paniculata_contig5296:4548..46051622930533.7870648-CDS-H-paniculata_contig5296:4548..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 4549..4605 +
1691481336.6564698-CDS-H-paniculata_contig5296:4548..46051691481336.6564698-CDS-H-paniculata_contig5296:4548..4605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5296 4549..4605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5296.12682.1

>prot_H-paniculata_contig5296.12682.1 ID=prot_H-paniculata_contig5296.12682.1|Name=mRNA_H-paniculata_contig5296.12682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
EEYSSPDGTFALQYPMTFKVNFKSEEIRGYEVGVAVDPVKIESLEKFGTP
NEVG
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mRNA from alignment at H-paniculata_contig5296:2405..4607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5296.12682.1 ID=mRNA_H-paniculata_contig5296.12682.1|Name=mRNA_H-paniculata_contig5296.12682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2203bp|location=Sequence derived from alignment at H-paniculata_contig5296:2405..4607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTACAGCTCGCCTGATGGAACGTTTGCCCTCCAGTACCCGATGAC
TTTCAAGGTGTTCTCAAAACCCCTCAAGACCCATAAGTTGGAGGTGCGAC
CTTTCGTACTCGCCTTGTACAGAAGAATTTGGTTGCTGGGTGCGTTGGAA
GAAGTCGAGACTCAATCATGGGCCCCTTTGTAAACCATATTTTCTGGGGG
TCGTTTTGCAAGGTCTGGCGGTTACGGGTTTGCGGCACCCCGCGTGCTCT
ATAATCGGGCGTTGCTTTTTTCGTCGTCTTCGTAAGTTCGAGGGACAACG
GCGAGCGATATCATGATTCAATGCCTTTATCATTGTTTGAAGCTAGGGAT
ATGCAGCGATTTTCTCTCTTCCCCCCAAACACTGCTTGCTACGTGCTCCG
TTACAGATTCACAGTATGGCAATTTTCTCTCTTACCTTGAGAACGCTGCT
TTCTACGTGCCCAATTACAAATTCATAGTACGGCCACAAGCAACATGGGC
GCGAAACAAGTCAAAGCGTTTCAATTTACTTTGGACATTTTTTGGACATT
TTTGGGTTCAACACGAGGGACGGAAACACAGGAGTTCGTATGGAAGTACT
CTGTAGTTTCCAGTAAGACGAGGGTACATTGAAGTTCAGGTTGTTGCTCG
CAGGACGGGCGCGGTGGTAAATTGTTTTTTGCTGAATTACAGCACAGAAA
TGCACGCGTTTCGTGCTTCATATTTTTTCATGTTGGAAATGGTACACCAC
GTCATCACCGGTTGCGCTCTGTACCCACCAAAAAATGTTCCAATTAATAT
CTAATTTGACACTACAGGTCAACTTCAAGAGCGAAGAGATCAGGGGGTAC
GAGGTCGGCGTTGCGGTGAGTGGTCGAAGAGTATTGCCGTGGGGGTGGTG
TTGCTTATGATGATGATGGCGGCGAAAGACAATTTGCAGTATGCGGTACC
AGTGTTTCGTGTGAGCCCTTAAGTGAGTGGGCTCCGATTGAACTTACATG
AGTCACTGTCCTTTAGATGAGCTGCAAATGAACGCGGACTCCTCCGATGA
CTGACCCTCCCGTCCGTGGTAGACTGTGACGACCCCTTTTTCGTGTGTAG
CCAGGTGTGACTACTTTCGACACGACGGATTCGTGAAATTGAACAATGAC
AGCAACAGCAGCCGTACCATTGGGCGCTGGGAAACAGCAAAAACACGTTT
GGGGGTGCGAACAATCCTACAAGGCTCCCTACCTAATTTGTATATTTCCT
CTGTCCAATAAGTACAGTACATCTTGTTCACATCGACACTTGAAAGTCTT
TGTTTTTTTTGTTAACAAGAATTCTACTTTTTTGGGGGTTGAATCACATT
TGTTTTTAGTCAAACGCTTGACTTTTGACACCTAAACACACGCCGTGAAG
AAAGCACTCGGCCAAAAAGGGCCACAGTTAGCGTTTTCTTTTTTTCAAAA
GTACTCGTATCCCATGATCTGGGTTGGTGTTGGTCTTTTCGGAATATCCT
ACGCAAATTTGAGATCCATCAGACCGCAAATGTACCTTCCCAATGTTGAG
TTTTTGGCTTGCATATTGATATCTCAAAAATATTCGTTCAGTTCGAAATG
GTTGAGATAGCATCATCTCAGCACAAGATCTTTGGCTGGAAATGGCAAAT
GTTGCAAGAATAGCAAAATCGTTCAGTAACGGCTGAATGGCGCTTCTACG
GCAAACACTTCGCAGCAATACATCCGACGGCATAACGGTTTATTGCGTTG
GATTCCTCGGAACAATTTGGACACATTACAGTCATCGTCGCGTTCCCCAT
CTTCTCTATTCGTCTTCCTCCGGGTCACAACGGTTGGGATAGTGGATTAT
TTCTGATAAGAAAACAATGACCAAAATATGGCTCTTTTTCGGCCGACTAC
TTTTTTCATGGCGTGTGTGTAGCTATCAAAATTAAACCGTTTTACTTTCT
TGTTGGGATAAACTCTGAAAACAGGTAGAATTCTAGTAACAAAAAGAAAT
TGGAGATCTTTAAATGCCTCTGTGAGCAAGACGTATGATAATTATGGGAT
AAAGAAAGTACATATCTTCTCGTTATTTTTCCCTGTAAGGCTCCTTATCG
CGTGTCTCTGCCTTCCGTTGTCTTTCTTGTCTTGTCAAGAGAAGGTAGAC
CCGGTCAAGATTGAATCCCTGGAAAAATTTGGCACACCGAACGAGGTCGG
CGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5296:2405..4607+

>mRNA_H-paniculata_contig5296.12682.1 ID=mRNA_H-paniculata_contig5296.12682.1|Name=mRNA_H-paniculata_contig5296.12682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig5296:2405..4607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTACAGCTCGCCTGATGGAACGTTTGCCCTCCAGTACCCGATGAC
TTTCAAGGAAGAGTACAGCTCGCCTGATGGAACGTTTGCCCTCCAGTACC
CGATGACTTTCAAGGTCAACTTCAAGAGCGAAGAGATCAGGGGGTACGAG
GTCGGCGTTGCGGTCAACTTCAAGAGCGAAGAGATCAGGGGGTACGAGGT
CGGCGTTGCGGTAGACCCGGTCAAGATTGAATCCCTGGAAAAATTTGGCA
CACCGAACGAGGTCGGCGTAGACCCGGTCAAGATTGAATCCCTGGAAAAA
TTTGGCACACCGAACGAGGTCGGC
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