mRNA_H-paniculata_contig52912.12678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52912.12678.1
Unique NamemRNA_H-paniculata_contig52912.12678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.400e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 EEIPREEGVTMLAEKI--NISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            EE+ R +G+   AE     +++ V  +T H WMI L CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  355 EELQRLDGIKGPAEDFCAEVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 431
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BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.130e-10
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   40 EKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +++ +++ V  +T H WMI L CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  373 KRLTVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 434
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BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.910e-10
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   31 MLAEKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +L+ ++N+ V    +T H WMI L CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  203 LLSYQVNLPV--SMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 265
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.920e-10
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   31 MLAEKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +L+ ++N+ V    +T H WMI L CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  343 LLSYQVNLPV--SMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 405
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.930e-10
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   40 EKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            E++ +++ V  +T H WMI   CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  161 ERLTVNLPVSMATTHSWMIVPGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 222
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.930e-10
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   49 NISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            ++++ V  +T H WMI L CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  452 DVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 510
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 9.960e-10
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   52 ISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +++ V  ST H WMI+L CKY+R T S+YTD H K  ++EYR + I+   +++ R PL
Sbjct:   59 VNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPL 116
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.000e-9
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   13 REEGVTML-AEKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +EE ++ L A ++N+ V    ST+H WMI+L C+Y+R T S+YTD H K  ++EYR + I+   +++ R PL
Sbjct:  336 KEEDLSRLHAYQVNLPV--SMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPL 405
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.860e-9
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   31 MLAEKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +L+ ++N+ V     T H W+I L CKY+R T S+YTDGH K +++ YR + ID   +L+ R PL
Sbjct:  301 LLSHQVNLPV--SMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPL 363
[Close]
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.580e-9
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   52 ISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRSQCIDTLTELSERMPL 225
            +++ V  ST H WMI+L C+Y+R T S+YTD H K  ++EYR + I+   +++ R PL
Sbjct:  394 VNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPL 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52912.12678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5J4M4_9PHAE2.400e-1142.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUX8_9PHAE1.130e-1043.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV8_9PHAE3.910e-1044.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE3.920e-1044.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5X3_9PHAE3.930e-1043.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE3.930e-1045.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXL0_9PHAE9.960e-1044.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE1.000e-941.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI16_9PHAE1.860e-943.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE2.580e-943.10Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52912contigH-paniculata_contig52912:793..1020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.1063075-CDS-H-paniculata_contig52912:792..9901622930533.1063075-CDS-H-paniculata_contig52912:792..990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52912 793..990 -
1691481335.3211176-CDS-H-paniculata_contig52912:792..9901691481335.3211176-CDS-H-paniculata_contig52912:792..990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52912 793..990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.1227229-UTR-H-paniculata_contig52912:990..10201622930533.1227229-UTR-H-paniculata_contig52912:990..1020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52912 991..1020 -
1691481335.330204-UTR-H-paniculata_contig52912:990..10201691481335.330204-UTR-H-paniculata_contig52912:990..1020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52912 991..1020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52912.12678.1prot_H-paniculata_contig52912.12678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52912 793..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52912.12678.1

>prot_H-paniculata_contig52912.12678.1 ID=prot_H-paniculata_contig52912.12678.1|Name=mRNA_H-paniculata_contig52912.12678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MLAEKINISVLVGRSTVHRWMIKLRCKYKRHTSSYYTDGHNKLNILEYRS
QCIDTLTELSERMPL*
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mRNA from alignment at H-paniculata_contig52912:793..1020-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52912.12678.1 ID=mRNA_H-paniculata_contig52912.12678.1|Name=mRNA_H-paniculata_contig52912.12678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig52912:793..1020- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGATACCCAGAGAAGAAGGTGTAACGATGCTAGCTGAGAAGATCAA
TATTTCCGTACTTGTCGGCCGTAGCACTGTGCACCGATGGATGATCAAAC
TAAGATGCAAATACAAGCGACACACGAGCTCCTACTACACGGACGGTCAC
AACAAGCTAAATATATTGGAATACCGTAGCCAGTGCATAGACACCCTCAC
CGAGTTATCTGAACGCATGCCGTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig52912:793..1020-

>mRNA_H-paniculata_contig52912.12678.1 ID=mRNA_H-paniculata_contig52912.12678.1|Name=mRNA_H-paniculata_contig52912.12678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig52912:793..1020- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGCTGAGAAGATCAATATTTCCGTACTTGTCGGCCGTAGCACTGT
GCACCGATGGATGATCAAACTAAGATGCAAATACAAGCGACACACGAGCT
CCTACTACACGGACGGTCACAACAAGCTAAATATATTGGAATACCGTAGC
CAGTGCATAGACACCCTCACCGAGTTATCTGAACGCATGCCGTTGTAGAT
GCTAGCTGAGAAGATCAATATTTCCGTACTTGTCGGCCGTAGCACTGTGC
ACCGATGGATGATCAAACTAAGATGCAAATACAAGCGACACACGAGCTCC
TACTACACGGACGGTCACAACAAGCTAAATATATTGGAATACCGTAGCCA
GTGCATAGACACCCTCACCGAGTTATCTGAACGCATGCCGTTGTAG
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