prot_H-paniculata_contig5291.12677.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5291.12677.1
Unique Nameprot_H-paniculata_contig5291.12677.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length892
Homology
BLAST of mRNA_H-paniculata_contig5291.12677.1 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 7.130e-52
Identity = 217/618 (35.11%), Postives = 283/618 (45.79%), Query Frame = 0
Query:  126 RCMFTSQKTKKRKVWSDGAVKCCSKRQRVSLYRWSDVLGVTDKLLGEVYLSVPEYKAFVNNGEPELEMELYIVSLDGVIQE------------APLTAEGSIGSTTDTAGAGSAAHGRKRKLLKPFKPPSRTAPPAAP-PLDSWGARRNGNRLVDGGNVPNGERDSQGEAR-------NGLKSRSCYTGFGHVASLWEDDDDDEIA----EGSAGLSAASGGSGSGWGLHNEGSGRGPQDRHDPGYKGLISDNSSRGGGTGFAGSIPDGAARMVQLSAAATTIPTACNGRVVDTWRRHDDLRAPDNSYSSHDSAEHSVRQNSARYRGASDDGCAESVSDGHVHDRQSIQGHEPYTERNPGEHKQATGGRYVDETGIDREGRNGKSHRGQSYYEEEE----DGVGVAQADHGTLHQHGDFSAHAVGYSMEKHQAIEGRSSEHGSHEGRDGCEEGHTRSTQDILSLFGGLGNSPLDEPSVSAPDSARDLSSA---APSESSLMAPGDPRSQAPGQEHPPPGIGNEAVLRGRGTAADMRRAQRAAREAQQQDRIVAVVDAAESTPATTHSANSAPAV-GPWDCAVCGVHGTPSALSCRVCGAQRPREIGNCRGVSSAEEDG 711
            RCM+T+QKTKKRK WSDGAVKCC KRQRVSLYRWS+ LGVT+KLLGEVYL+VP+Y+AF+  GEPELEMELYIVSLDGVIQ                                     +KRK+ K FKPP+R  P  AP P DSWG      RL  GG    G  D  G+ R         L  R+ YTGFGHV SLW++D++++      E  AGL+       +GWG+    +G G Q+ +D G +  +   +          ++     R    SA  +T  T   G           LR    S S+ D A  S  Q   + RG               HD  ++ GH  + E  P  + +       D+  + R        R  S+Y E +    DG   A    G   ++     +A+G           R SE    E          RSTQDILSLFGG G +P  +      +  R+ + +    P+E+ L       SQA G    P G G   + R    A DMRR Q+ AR A         V  A +  A+   A++  AV G W C  CGV G  S+ SCRVCGA+R +E+    GV+   +DG
Sbjct:  144 RCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRKIFKAFKPPARREPTPAPQPDDSWG------RLPPGGVSLRGNGDRGGDGRFPSNRGGGKLSPRTTYTGFGHVESLWDEDEEEDDGQDRHEDGAGLADEHR---AGWGMGGA-AGPGYQNPYDVGNESDVLQQARS------EAAVQPPYHRSTGTSAVGST-NTWMWGPPAGEHSLDGPLRP---SRSTADFASGSPAQQQQQERGR--------------HDETAVPGH--HGEDGPSSYLERLRRGNDDDDDVGR--------RSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIG-------GAGSRVSEEVDRETPGDGARMEMRSTQDILSLFGGFGGTPSTQGGHDHGEQERETAESQWRGPTEAPLG------SQASGDALMPVGGG---IRR----AVDMRRTQKEARAAXXXXXXXXXVAGAVTGAASARGASNDDAVTGDWACGTCGVRGGSSSASCRVCGAKR-QEL-RSDGVAQGGDDG 695          
BLAST of mRNA_H-paniculata_contig5291.12677.1 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.620e-29
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 0
Query:   79 RKAADSTE----DLLQPSG-SGFETILPTGETSSKNSARSADGGFDSTVQTLRCMFTSQKTKKRKVWSDGAVKCCSKRQRVSLYRWSDVLGVTDKLLGEVYLSVPEYKAFVNNGEPELEMELYIVSLDG 202
            RKA+ S      D+   +G S    +  T  T++   A    GG D     LRCM+T+QKTKKRK WSDGAVKCC KRQRVSLYRWS+ LGVT+KLLGEVYL+VP+Y+AF+  GEPELEMEL     DG
Sbjct:   36 RKASSSKSLRPYDIPYATGNSNAAAVNTTAGTAASAEAGKVPGGIDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELLRRGDDG 164          
BLAST of mRNA_H-paniculata_contig5291.12677.1 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.360e-27
Identity = 80/203 (39.41%), Postives = 109/203 (53.69%), Query Frame = 0
Query:  123 QTLRCMFTSQKTKKRKVWSDGAVKCCSKRQRVSLYRWSDVLGVTDKLLGEVYLSVPEYKAFVNNGEPELEMELYIVSLDGVIQEAPLTAEGSIGSTTDTAGAGSAAHGRKRKLLKPFKPPSRTAPPAAPPLDSWGARRNGNRLV-------------DGGNVPNGERDSQGEARNGLKSRSCYTGFGHVASLWEDDDDDEIAE 312
            Q LRC+FTSQ TKKRK W DGAV+CC+KR  V+LY+WSD LGVT+K LGE +L+  E+ AFV   EPELEME Y+V+L+GV +    T+ G    +++  GA       K+  LK +K P++   PA P  D    R                     GG        +Q    NG  + +   GFG ++SLW+D+  D   +
Sbjct:    9 QVLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENT-YTSNGDSQQSSEGGGAA------KKPKLKGWKAPTKVTVPARPSDDDVYERLRQQXXXXXXXXXXXXXXGYSGGMQQ--RAGAQAAVGNGRCAGAISNGFGRLSSLWDDEGADRTPD 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5291.12677.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZC9_9PHAE7.130e-5235.11RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI1.620e-2956.59RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A835YK32_9STRA2.360e-2739.41DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018838Domain of unknown function DUF2439PFAMPF10382DUF2439coord: 122..205
e-value: 2.0E-9
score: 37.6
NoneNo IPR availableGENE3D4.10.1060.10coord: 660..701
e-value: 1.0E-5
score: 26.5
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 667..696
score: 8.795

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5291contigH-paniculata_contig5291:4513..9892 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5291.12677.1mRNA_H-paniculata_contig5291.12677.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5291 4277..10110 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5291.12677.1 ID=prot_H-paniculata_contig5291.12677.1|Name=mRNA_H-paniculata_contig5291.12677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=892bp
MRRSGGERPPFANGRPMHIRRGNTAPGNDYPGVNQPLLFATENLNPGGKA
GRVHVNGHAQSSPAHENRTPPAHSGWTARKAADSTEDLLQPSGSGFETIL
PTGETSSKNSARSADGGFDSTVQTLRCMFTSQKTKKRKVWSDGAVKCCSK
RQRVSLYRWSDVLGVTDKLLGEVYLSVPEYKAFVNNGEPELEMELYIVSL
DGVIQEAPLTAEGSIGSTTDTAGAGSAAHGRKRKLLKPFKPPSRTAPPAA
PPLDSWGARRNGNRLVDGGNVPNGERDSQGEARNGLKSRSCYTGFGHVAS
LWEDDDDDEIAEGSAGLSAASGGSGSGWGLHNEGSGRGPQDRHDPGYKGL
ISDNSSRGGGTGFAGSIPDGAARMVQLSAAATTIPTACNGRVVDTWRRHD
DLRAPDNSYSSHDSAEHSVRQNSARYRGASDDGCAESVSDGHVHDRQSIQ
GHEPYTERNPGEHKQATGGRYVDETGIDREGRNGKSHRGQSYYEEEEDGV
GVAQADHGTLHQHGDFSAHAVGYSMEKHQAIEGRSSEHGSHEGRDGCEEG
HTRSTQDILSLFGGLGNSPLDEPSVSAPDSARDLSSAAPSESSLMAPGDP
RSQAPGQEHPPPGIGNEAVLRGRGTAADMRRAQRAAREAQQQDRIVAVVD
AAESTPATTHSANSAPAVGPWDCAVCGVHGTPSALSCRVCGAQRPREIGN
CRGVSSAEEDGNGSDSRYDASAASCKSGESAQQQNEQESDGGVKFGDSWT
QNPFQHSGEGQHVFPDDAEQQYEHDDGELEKRAPVGELRMPVQAGGLAWH
GLREVSPANDSGRDKGCDAAGRPSHHNAATPGGWPRDSSTTRKDQRQGTM
LFTATASICRMEADAGGVLQRRPGGGMSVDVGSLSDSDNDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018838DUF2439
IPR001876Znf_RanBP2