mRNA_H-paniculata_contig5290.12676.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5290.12676.1
Unique Name	mRNA_H-paniculata_contig5290.12676.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5290.12676.1 vs. uniprot
Match: D8LRM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM2_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 1.920e-57
Identity = 143/294 (48.64%), Postives = 184/294 (62.59%), Query Frame = 2

Query:   98 DYRQSLRRDLNDLLQHLSADLEDARTVAETDAKRAEASTAAAGQKGEKVRRLGDALATMEARLAASDRERQVAKEAFAKISNEVQTRLQETERQRGELVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTEAELSAKVVAEGREKKALDKLSETKRTTAMQDERIESLRSELSSLRRTLEQTVDTAKSSDRESAQRLVQLSQVNAKLSTEGAGARARLVDAEDIAEKRAHELEVMAKSLMKSEEDGRHAAEAVQRLEEELEVSEARWQAAEGQLAAADRREKRY 979
            D   +  R+LN LLQ LS DLE+A+   E+  KRAEA     G K   V+R+ +ALA  EARLAAS R++++ KEA +K S E   +  E +RQRGEL LL                                     + +   SA + AE   KK LD+L E +R T MQDERIE+LRSEL++LRRTLEQT + AK+ DRESAQRLVQLSQ NAKLS+E   ARAR++DAE+  EK   + +  AK+  K E+DGR AA++VQRLEEELE++ ARW+AA+GQL AA+RREK +
Sbjct:  289 DKLNATNRELNALLQSLSTDLEEAKAAGESSGKRAEALAHEVGVKEGDVQRVREALAATEARLAASGRDKELLKEALSKSSAEAHAKTAEFDRQRGELDLLEREKHDLVLDVQERVRVHKEATADAERYRERLEQAENRLKEGESATLAAELSRKKTLDELGEARRGTVMQDERIEALRSELTTLRRTLEQTTEAAKARDRESAQRLVQLSQANAKLSSESTSARARVIDAEEAVEKAGQDAQEAAKAQAKLEDDGRRAADSVQRLEEELEIANARWKAAQGQLVAANRREKEF 582

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5290.12676.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5290.12676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LRM2_ECTSI	1.920e-57	48.64	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5290	contig	H-paniculata_contig5290:9475..14195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-12_000340.1
Exons	9
Model size	1012
Cds size	930
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5290.12676.1	prot_H-paniculata_contig5290.12676.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5290 9557..14195 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930532.7818298-UTR-H-paniculata_contig5290:9474..9556	1622930532.7818298-UTR-H-paniculata_contig5290:9474..9556	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5290 9475..9556 +
1691481335.148836-UTR-H-paniculata_contig5290:9474..9556	1691481335.148836-UTR-H-paniculata_contig5290:9474..9556	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5290 9475..9556 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5290:9475..14195+
coding sequence from alignment at H-paniculata_contig5290:9475..14195+

protein sequence of mRNA_H-paniculata_contig5290.12676.1

>prot_H-paniculata_contig5290.12676.1 ID=prot_H-paniculata_contig5290.12676.1|Name=mRNA_H-paniculata_contig5290.12676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp
MANENDYRQSLRRDLNDLLQHLSADLEDARTVAETDAKRAEASTAAAGQK
GEKVRRLGDALATMEARLAASDRERQVAKEAFAKISNEVQTRLQETERQR
GELVLLEREKHDLILDVQERVRALKELTTDVERYRQLVTEAKRKTEAELS
AKVVAEGREKKALDKLSETKRTTAMQDERIESLRSELSSLRRTLEQTVDT
AKSSDRESAQRLVQLSQVNAKLSTEGAGARARLVDAEDIAEKRAHELEVM
AKSLMKSEEDGRHAAEAVQRLEEELEVSEARWQAAEGQLAAADRREKRYN
VNGHKQRRG*

mRNA from alignment at H-paniculata_contig5290:9475..14195+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5290.12676.1 ID=mRNA_H-paniculata_contig5290.12676.1|Name=mRNA_H-paniculata_contig5290.12676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4721bp|location=Sequence derived from alignment at H-paniculata_contig5290:9475..14195+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGTGCAGAAAGACAGAGGATATGTTGTCAGCAGTTCTTTCCAGAGC
TAAGGACGCGGAGAAACGGCTGAGAAAAGAAAATGGCGAACGAGAACGAT
TATCGGCAGAGCTTACGAAGGTGTTGTGTAGGCCTACAACGTAGTTGACG
CTGTAGAACGTTGTCATTTTTGAATGGTGACGATATTACAATACAGAACC
ACCGCACATATTTAGCCAGATGCAGCACTTATAAGTATTAGTCGCCCGAC
GCCCGTGTACTGGGGTGAGAGTCCCGATGCGTGTAACAGTTGTGATCTTC
TTTCCACCTTTCCGTCAAGCCGCCATGATTTCCTCACGTGTCATCATACT
ACCGCACCCAATGGCGGTATAGATAACGTCGGCGGTGCCCACCAGCTCAG
GTTGTCAGCTTCCTGTGTCTTGGTGCGCTTACAAGGTATCGGAGCAGAGG
CAAATCGAAATTGCCGATTTCACTGCGGAACTAGATCGGCTCAGGGAGGG
CGAGGCAAAGTATCGCGACAGTAGCGAGAAAATGAACGCCACGAATAGGT
GGGGCTTGATTATTGACTTGGCTGCCAAAAACTACCTACTGGTAGCCCGC
ATGCACCCACAGTCCATCGATTAATGAAACGATCCTCATCGTGATTCGAG
GGGATTATGACGCATTCGGGTGTGTTAATCTTTCATACATGCTACCTGCA
AGCTATATCCAGAAAATGCCTTGCCCACCCTTACCCTGTCCGCCGACTCC
CGTCGCCAGAGACCTTAATGATCTCCTTCAGCATCTCTCAGCGGACCTCG
AAGACGCGCGGACCGTGGCTGAGACGGATGCAAAGCGAGCGGAGGCGTCG
ACGGCAGCGGCGGGCCAGAAGGGAGAAAAGGTTCGCCGGCTCGGAGACGC
GCTGGCGACAATGGAGGCCAGGCTAGCGGCATCGGATAGGTAAAGACGTG
AAAACGAATAAACAGACTAGTAGGGAAATAATAATTCGCACCGAGAATTA
TGTTGTATGAGTGAAGGTGACGATGTATGTGTGGACATGACGACGAAATG
ATAGTGAGATGAATGCCCCGCTGTCCGGAATTCCTTTTCATCGGCCGAGT
TTGTCACTATGTTGAAACTTGATGTAGAAAGCCTTGCTGGCCAACGATAA
GAGACAGTATCCCTACCGATCATCTCTCATGCTATGCCCTCCGGGGGACG
ATAAACGGAACATGAACTGTAGCAAAAAACGCACTTGTGAAGCGAACCGG
AGAACGAAAGCGTCGGGAGGGCGGTGACATAACCGCGATAAATCACAGGC
TGTAGTCGTAGTCGGTGCACCAGGACCGAGAAGCACAATGGGCGACTCAT
GATGGGCTGACAGCACAGGGAGTGGTATCTACTGTTAATACGCCTTATCA
TTGACCCTACTTGGCGAAGCAAGCATATACTCGTCGCACCGTGCCGCGTC
TCGGTGAAATGAACGCACAACCCTAAAATCCTTACCGCTCAGAGAAAGGC
AGGTGGCGAAAGAAGCATTTGCAAAAATATCAAACGAAGTCCAGACCCGT
TTGCAGGAAACCGAGCGACAGCGAGGAGAGGTAAGAGACATAGCCCCTGG
AATTGATACAGAAGTCATGACATATTCCGAATAAGCATGAACGGGGGGAA
CGCCTAATTATCACCGCGTGCTACTCCAATTGGGCGTCAGCAACCTACAA
CATCCGTTCCCATGATATAGACGTTCCCAGTAATCATCGGGTCCTTGCCG
ACTCTGTGCCATTTCACTCAACAAAATGAGACGCCCGTATATCATTGTGT
TTGTTTCTGCTGCTCCTCGGAGGGTTGGATGCAAATTCAGTCCATTTTTA
CATGCGGATCAACGCGGAGATTGTGATAAATGAACCATGATGGTATACAT
TTCCCTCCATGTGCCTTTATTTTGTGTTGCTTTTCTAAGTTGGTGCTCCT
TGAGCGAGAGAAGCACGACCTGATACTGGACGTTCAAGAGAGAGTCCGAG
CACTGAAGGTAAACAAGTACCTCTTTACCCTATATAGTCTTGCACACGCC
TTCGTTATATAGCCAGACGTGTCGTTCCTCTAGATTACTCCTGTTCGGTA
AAGCGTGAGTAGTGCTTTCAGTAGCCCATCCATGCTTTCGATCGGGTAAG
ATTTGTCCCGAGTGCCTACAGACTTCACGGACCTTTCGTTGGCGGATCAA
GCCGTTTTGTGCGAAGCGGTGGCAAGTGTCTGATCTAGTGTCGGTCTCTC
TTTCGCCACATTTTTGAAGCGAGCTAGATTTCGAATTTGTTTTATTGGTC
TCGCGGAAAGGTCTTCAGCTGGCCATATCTGGCCGCGACATTTTTGCTGC
ATAAGAGCAGTACAGGGACTGAAGACGAGCGCGACTTCAACGCACCCAAC
TGAAACTATTGCTACATTTTCCTCGCCTCGCCTTTTCTGGTAGAAACGAG
AGTTCTGTGACACGAAAACCACGGAGTTGTCGCCCGTGTTGACTACTGCT
GCGATTATGTTAGCTTTCCAATAAAATGTTTTTTTCTGTGCCTATTCGCC
GGAACCCAAACGCTCAACCTACCTCCTCTGATTCTGCGTGGGACATTCAC
CGATATTGATGAACGCACTTTCGGCATGGGCAGGAGTTGACGACAGACGT
AGAACGATATCGACAGCTCGTTACAGAAGCGAAGAGGAAAACGGAAGCGG
AACTGTCCGCTAAGGTTGTGGCCGAGGGTAGGGAGAAGAAGGTACAGTAG
ATATCATTCCTTCTTCGTTTTTCCATAGGTAGAGTAATAACGAATCGGAA
ATCAACAAGGGTTCACGCGAAGAAATATGCGTCGAGTACAGCAACGGCGA
AAGGTAATCGATAAAGTTATACCTCAGTGCGCAATATTGGGAGAGAGAAC
CGTGGCACCATGGGTCAAATAGCACGCCCAGACTACTACGACGGGTTGCA
ATGACGCCAATTTCTTGCTACTCAACATTCCCTTTGCACTGTCGCAATAC
TCTTATATTAAACCGCAAACTGGTGGAGGTACCTCAAAATGTGATCTATC
TGGTGCTTACCCCATAGGCATTGGACAAGTTGAGCGAGACGAAACGCACG
ACCGCAATGCAGGACGAGCGGATCGAATCTTTGAGGTGCGTTGGCAATAA
TTTTTTCTCTCCTGGTTAAGCACGACCCGGTGGGCATAGAAGACGGTGTT
TGCATAGGAAGACAAGTACTAACAATGAGCTGTGCTTTTCGTTCGGTGTT
GAGGATGATGTCAACGTAATGCCCTCGCTTGATTGTGTTTTTATGCCCCT
ACTTGACATATATTGCTGGCCATTGCGAGTACCCGCTAGGCGTAGTCGTC
GTTTGAACATTAAGAGAACATCGTCGTGCAATACAACACCACTTCGATTG
CCCACATTTGAAACAAATCAAGTGTAAAGCTATTTTATAATGACGCAGTT
TGGACCCAACTAGTATACCGATGGAAACGATTAATTTGACGCATGCCCTG
CATGGATGCATCTGCCCTCGCCACCAGAATTAGCACCAGCTCGATACGCT
TCGCTGTATCTCTTGCCAGCTATCCCCGCGGTATAATCTTCAATGACAAT
TTGAATCACATTGGCGGTAATCATGGCTGCTTTAGGTCAGAGCTATCTTC
TCTGCGACGAACCTTGGAACAAACTGTAGACACTGCCAAATCCAGCGATC
GGGAAAGCGCTCAGGTGTGTACTGTGTGCCGCCATTTTCCTTGTAGCCAC
CGAAAAATCAACGATGGAAAAACTATCCATGGGCCTTCGTCCGCCATTCT
GTGGTTGAGCTGTATAAAAAACGCATCTAATTGGTAGGAGATAATACCAG
TAGTTTCGTCGGGCACCACAGCAGCTATTTTGCGTATATCCTCATGTTCG
CAGAAAGTTGGTTGAAATTCAGAGGGGCGTCTACCCAAGTACTGACCTAT
AGAAGCATTCTTCTGGTCGTACGTCGCTCAATTTCGCACCTTTACGTGTG
CCTCGCTGATATGGGACTCTCGAACAGCGTTTGGTACAGCTGAGCCAGGT
AAATGCTAAGCTCTCGACCGAGGGGGCGGGCGCTAGAGCACGGCTGGTCG
ACGCGGAAGACATTGCCGAGAAGCGTGCACATGAGCTCGAGGTGGGTAAT
GGAGGAAATGATTGCTGCGGCTTTGCCGTACCTCCAACACCGCCACCAAA
ACAGGCCTATCTGTGTTTGTTATCAAGCTGCTGGCACCACAATTTGGCCA
CATGTGTTGCCGTACGATTGTTGGTATACCTCTAGAACGGTGATAATGGT
ATCTATTGATATCGTTTATCTCTGATCTTGCCAGTCTACATTAAAAAGGT
TCCACCCACGAGGCTGTGCCAACAATTTCCGCAGTGTCGGAAGCCCAAAG
TTGGACGTATGGCTTCAATTAGTTGGTTTCATTGGTAAGTAGGTTATCAG
CGCCGCCTTATACTGTACATCTCCAAGTCCAAAATGTACGGAATGTTTTT
TCCAGCGGCAATTCTCCTCTTGCTTCGTTCCGTAGGTTATGGCTAAAAGC
TTGATGAAGTCTGAAGAGGACGGGCGACACGCGGCCGAAGCCGTGCAACG
GCTTGAGGAAGAACTAGAAGTTTCGGAGGCGAGGTGGCAGGCAGCAGAGG
GGCAACTAGCGGCAGCCGACCGCCGGGAGAAGAGGTATAATGTAAATGGC
CACAAACAGCGAAGGGGGTAG

Coding sequence (CDS) from alignment at H-paniculata_contig5290:9475..14195+

>mRNA_H-paniculata_contig5290.12676.1 ID=mRNA_H-paniculata_contig5290.12676.1|Name=mRNA_H-paniculata_contig5290.12676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig5290:9475..14195+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACGAGAACGATTATCGGCAGAGCTTACGAAGATGGCGAACGAG
AACGATTATCGGCAGAGCTTACGAAGAGACCTTAATGATCTCCTTCAGCA
TCTCTCAGCGGACCTCGAAGACGCGCGGACCGTGGCTGAGACGGATGCAA
AGCGAGCGGAGGCGTCGACGGCAGCGGCGGGCCAGAAGGGAGAAAAGGTT
CGCCGGCTCGGAGACGCGCTGGCGACAATGGAGGCCAGGCTAGCGGCATC
GGATAGAGACCTTAATGATCTCCTTCAGCATCTCTCAGCGGACCTCGAAG
ACGCGCGGACCGTGGCTGAGACGGATGCAAAGCGAGCGGAGGCGTCGACG
GCAGCGGCGGGCCAGAAGGGAGAAAAGGTTCGCCGGCTCGGAGACGCGCT
GGCGACAATGGAGGCCAGGCTAGCGGCATCGGATAGAGAAAGGCAGGTGG
CGAAAGAAGCATTTGCAAAAATATCAAACGAAGTCCAGACCCGTTTGCAG
GAAACCGAGCGACAGCGAGGAGAGAGAAAGGCAGGTGGCGAAAGAAGCAT
TTGCAAAAATATCAAACGAAGTCCAGACCCGTTTGCAGGAAACCGAGCGA
CAGCGAGGAGAGTTGGTGCTCCTTGAGCGAGAGAAGCACGACCTGATACT
GGACGTTCAAGAGAGAGTCCGAGCACTGAAGTTGGTGCTCCTTGAGCGAG
AGAAGCACGACCTGATACTGGACGTTCAAGAGAGAGTCCGAGCACTGAAG
GAGTTGACGACAGACGTAGAACGATATCGACAGCTCGTTACAGAAGCGAA
GAGGAAAACGGAAGCGGAACTGTCCGCTAAGGTTGTGGCCGAGGGTAGGG
AGAAGAAGGAGTTGACGACAGACGTAGAACGATATCGACAGCTCGTTACA
GAAGCGAAGAGGAAAACGGAAGCGGAACTGTCCGCTAAGGTTGTGGCCGA
GGGTAGGGAGAAGAAGGCATTGGACAAGTTGAGCGAGACGAAACGCACGA
CCGCAATGCAGGACGAGCGGATCGAATCTTTGAGGCATTGGACAAGTTGA
GCGAGACGAAACGCACGACCGCAATGCAGGACGAGCGGATCGAATCTTTG
AGGTCAGAGCTATCTTCTCTGCGACGAACCTTGGAACAAACTGTAGACAC
TGCCAAATCCAGCGATCGGGAAAGCGCTCAGGTCAGAGCTATCTTCTCTG
CGACGAACCTTGGAACAAACTGTAGACACTGCCAAATCCAGCGATCGGGA
AAGCGCTCAGCGTTTGGTACAGCTGAGCCAGGTAAATGCTAAGCTCTCGA
CCGAGGGGGCGGGCGCTAGAGCACGGCTGGTCGACGCGGAAGACATTGCC
GAGAAGCGTGCACATGAGCTCGAGCGTTTGGTACAGCTGAGCCAGGTAAA
TGCTAAGCTCTCGACCGAGGGGGCGGGCGCTAGAGCACGGCTGGTCGACG
CGGAAGACATTGCCGAGAAGCGTGCACATGAGCTCGAGGTTATGGCTAAA
AGCTTGATGAAGTCTGAAGAGGACGGGCGACACGCGGCCGAAGCCGTGCA
ACGGCTTGAGGAAGAACTAGAAGTTTCGGAGGCGAGGTGGCAGGCAGCAG
AGGGGCAACTAGCGGCAGCCGACCGCCGGGAGAAGAGGTATAATGTAAAT
GGCCACAAACAGCGAAGGGGGTAGGTTATGGCTAAAAGCTTGATGAAGTC
TGAAGAGGACGGGCGACACGCGGCCGAAGCCGTGCAACGGCTTGAGGAAG
AACTAGAAGTTTCGGAGGCGAGGTGGCAGGCAGCAGAGGGGCAACTAGCG
GCAGCCGACCGCCGGGAGAAGAGGTATAATGTAAATGGCCACAAACAGCG
AAGGGGGTAG