mRNA_H-paniculata_contig529.12675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig529.12675.1
Unique NamemRNA_H-paniculata_contig529.12675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig529.12675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig529contigH-paniculata_contig529:32939..34208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1271
Cds size651
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930532.405901-UTR-H-paniculata_contig529:32938..335571622930532.405901-UTR-H-paniculata_contig529:32938..33557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig529 32939..33557 +
1691481334.976914-UTR-H-paniculata_contig529:32938..335571691481334.976914-UTR-H-paniculata_contig529:32938..33557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig529 32939..33557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930532.4245112-CDS-H-paniculata_contig529:33557..342081622930532.4245112-CDS-H-paniculata_contig529:33557..34208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig529 33558..34208 +
1691481334.989159-CDS-H-paniculata_contig529:33557..342081691481334.989159-CDS-H-paniculata_contig529:33557..34208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig529 33558..34208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig529.12675.1prot_H-paniculata_contig529.12675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig529 33558..34208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig529.12675.1

>prot_H-paniculata_contig529.12675.1 ID=prot_H-paniculata_contig529.12675.1|Name=mRNA_H-paniculata_contig529.12675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MKEPSLVSADAPLVTGRGSDWERGSTGVRERVLLERNKMAAATPAKVIDI
KTEQVAQTPKDRDDRVTGMASGMGKATAVTVQEAEMASAQKAVAAETEED
AGQETETALGEAAATDFESGGARGGSGAAAGEGGGDAVNGGRGGARERRN
GRDKRTATGDGNGGNGDDGEGGGGDGCSGYGDSGEDAAGPGLMEGEGAGV
NTAAVAERNAHSGRNGG
back to top

mRNA from alignment at H-paniculata_contig529:32939..34208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig529.12675.1 ID=mRNA_H-paniculata_contig529.12675.1|Name=mRNA_H-paniculata_contig529.12675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1270bp|location=Sequence derived from alignment at H-paniculata_contig529:32939..34208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGGTGGTGCGGGGCCTGGGATGGCACGGATCTATCTTCGAGCTGTT
AACGTACCTGCAGGCGAGAATCATGAACGTGCCACAGCAGCAATGGGTTA
GGGCGGCGTGAACACGGGCGAGCGCAAGGACGAACGGACCTCTGCCGCGC
TATGACGGCCCCTTCGATTGGAACAGCCATCGGGAGAAATGGGAACAAGA
TGACCCCGACGAGAGCTACCTGAACTGTGGGGTATCCTTACTCTACGGCC
GGGCACGGGACGGCGACACGCAGAAACGACTCCTGGACGTCGAGCAAGTC
GCGGTGCCGCTATCGTGCCGGCATGGAAGCGGGTTGGTGCACATATCGTG
CCTCTTCCGTAGAGCGGTCGCCTTGGCAGCCGGCAGAACTGACCCTAGGC
CGTCCCCCCACAGTTCCCGGGTCCCATTCCAGGCGGGTGGAAATAGAGAT
GGCGACGGAGACGGGGAGATCGAGGCCGACGCTGGCACGGGCGGGGGAGG
CGCCGTGGGGAGCGGAGAGGAGAGCGGGAGTGCTGCCGGTAACGGCGCTG
ACGGCGGCGTCGGAAGCGTCAGCATCGGCATAGGAATCGGTAGCCCTCAC
AGCGGAAGCGCGGTTGGGAATGAAGGAGCCGTCGCTTGTGAGTGCGGACG
CACCACTGGTAACGGGGAGGGGTTCGGACTGGGAGAGAGGGAGCACGGGG
GTGCGGGAGCGCGTGCTACTGGAGAGGAACAAAATGGCGGCGGCGACGCC
CGCGAAGGTGATAGACATCAAGACGGAGCAGGTGGCACAGACACCAAAGG
ACAGGGACGATCGGGTGACAGGGATGGCATCGGGAATGGGGAAGGCGACG
GCGGTGACAGTACAAGAGGCCGAAATGGCGTCAGCACAGAAGGCCGTGGC
GGCAGAGACGGAGGAAGACGCAGGACAAGAGACGGAGACGGCGCTGGGGG
AGGCGGCGGCGACGGATTTTGAGAGCGGAGGAGCAAGAGGAGGCAGTGGC
GCCGCCGCGGGTGAAGGCGGGGGCGATGCTGTCAACGGGGGACGAGGCGG
AGCACGAGAAAGGCGAAATGGGAGGGATAAGAGGACCGCTACGGGGGACG
GAAACGGAGGCAATGGTGACGATGGCGAAGGCGGTGGAGGAGACGGATGC
AGCGGATATGGTGACAGCGGCGAAGACGCTGCCGGACCTGGCTTAATGGA
GGGGGAAGGAGCAGGCGTAAACACCGCGGCAGTTGCCGAAAGGAATGCAC
ACAGCGGCAGAAACGGGGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig529:32939..34208+

>mRNA_H-paniculata_contig529.12675.1 ID=mRNA_H-paniculata_contig529.12675.1|Name=mRNA_H-paniculata_contig529.12675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig529:32939..34208+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAGCCGTCGCTTGTGAGTGCGGACGCACCACTGGTAACGGGGAG
GGGTTCGGACTGGGAGAGAGGGAGCACGGGGGTGCGGGAGCGCGTGCTAC
TGGAGAGGAACAAAATGGCGGCGGCGACGCCCGCGAAGGTGATAGACATC
AAGACGGAGCAGGTGGCACAGACACCAAAGGACAGGGACGATCGGGTGAC
AGGGATGGCATCGGGAATGGGGAAGGCGACGGCGGTGACAGTACAAGAGG
CCGAAATGGCGTCAGCACAGAAGGCCGTGGCGGCAGAGACGGAGGAAGAC
GCAGGACAAGAGACGGAGACGGCGCTGGGGGAGGCGGCGGCGACGGATTT
TGAGAGCGGAGGAGCAAGAGGAGGCAGTGGCGCCGCCGCGGGTGAAGGCG
GGGGCGATGCTGTCAACGGGGGACGAGGCGGAGCACGAGAAAGGCGAAAT
GGGAGGGATAAGAGGACCGCTACGGGGGACGGAAACGGAGGCAATGGTGA
CGATGGCGAAGGCGGTGGAGGAGACGGATGCAGCGGATATGGTGACAGCG
GCGAAGACGCTGCCGGACCTGGCTTAATGGAGGGGGAAGGAGCAGGCGTA
AACACCGCGGCAGTTGCCGAAAGGAATGCACACAGCGGCAGAAACGGGGG
AATGAAGGAGCCGTCGCTTGTGAGTGCGGACGCACCACTGGTAACGGGGA
GGGGTTCGGACTGGGAGAGAGGGAGCACGGGGGTGCGGGAGCGCGTGCTA
CTGGAGAGGAACAAAATGGCGGCGGCGACGCCCGCGAAGGTGATAGACAT
CAAGACGGAGCAGGTGGCACAGACACCAAAGGACAGGGACGATCGGGTGA
CAGGGATGGCATCGGGAATGGGGAAGGCGACGGCGGTGACAGTACAAGAG
GCCGAAATGGCGTCAGCACAGAAGGCCGTGGCGGCAGAGACGGAGGAAGA
CGCAGGACAAGAGACGGAGACGGCGCTGGGGGAGGCGGCGGCGACGGATT
TTGAGAGCGGAGGAGCAAGAGGAGGCAGTGGCGCCGCCGCGGGTGAAGGC
GGGGGCGATGCTGTCAACGGGGGACGAGGCGGAGCACGAGAAAGGCGAAA
TGGGAGGGATAAGAGGACCGCTACGGGGGACGGAAACGGAGGCAATGGTG
ACGATGGCGAAGGCGGTGGAGGAGACGGATGCAGCGGATATGGTGACAGC
GGCGAAGACGCTGCCGGACCTGGCTTAATGGAGGGGGAAGGAGCAGGCGT
AAACACCGCGGCAGTTGCCGAAAGGAATGCACACAGCGGCAGAAACGGGG
GA
back to top