mRNA_H-paniculata_contig52899.12672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52899.12672.1
Unique NamemRNA_H-paniculata_contig52899.12672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: D8LN35_ECTSI (FAD dependent oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN35_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.710e-22
Identity = 56/117 (47.86%), Postives = 64/117 (54.70%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAAN-------------------SSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVVE 309
            RYW  VEE+KLVPDYSGIRPKL GP   +                         DE          P ++   G ADF+IQG   HGV GLVNL GIESPGLTASLAIA+HV  ++E
Sbjct:   75 RYWPGVEESKLVPDYSGIRPKLVGPDGPSVVAHXXXXXXXXXXXXXXXXXXXXXDEEHRQYPPVPRPGASHFRGAADFVIQGRDEHGVDGLVNLMGIESPGLTASLAIADHVVGMLE 191
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A839VMH1_9BURK (L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Herbaspirillum sp. Sphag64 TaxID=2587029 RepID=A0A839VMH1_9BURK)

HSP 1 Score: 90.1 bits (222), Expect = 2.810e-21
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHV 294
            +YW A+ +  L P Y+GIRPKL+GP       G+P                    PADF+IQGPS HGV GLVNLFGIESPGLT+SLAIAE+V
Sbjct:   35 QYWPALPDGALQPGYAGIRPKLSGP-------GEP--------------------PADFMIQGPSEHGVPGLVNLFGIESPGLTSSLAIAENV 100
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: UPI001BCD6F75 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Pseudomonas lalucatii TaxID=1424203 RepID=UPI001BCD6F75)

HSP 1 Score: 95.1 bits (235), Expect = 5.340e-21
Identity = 52/97 (53.61%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVV 306
            RY+  ++ ++L P YSGIRPKLAGP       G+P                    PADFLIQGP AHG++GLVNLFGIESPGLTASLAIAE VA ++
Sbjct:  299 RYFPGLDSSRLTPGYSGIRPKLAGP-------GEP--------------------PADFLIQGPGAHGLAGLVNLFGIESPGLTASLAIAERVAQML 368
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A530B3Y3_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530B3Y3_9HYPH)

HSP 1 Score: 86.7 bits (213), Expect = 2.800e-20
Identity = 49/101 (48.51%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVVETTT 318
            +YW  + +  L   YSGIRPKL+GP  ANS                           DF+IQ  + HGV GLVNLFGIESPGLTASLAIAEHV  +V  TT
Sbjct:    2 KYWPDLPDGSLQAGYSGIRPKLSGPGDANS---------------------------DFVIQDAATHGVDGLVNLFGIESPGLTASLAIAEHVMGIVAPTT 75
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A530AAW9_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530AAW9_9HYPH)

HSP 1 Score: 86.7 bits (213), Expect = 4.210e-20
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVV 306
            +YW  + +  L P YSGIRPKL+GP  A+S                           DF+IQ  +AHG+ GLVNLFGIESPGLT+SLA+AEHVA ++
Sbjct:    7 KYWPELADGSLQPAYSGIRPKLSGPGEASS---------------------------DFVIQDAAAHGIQGLVNLFGIESPGLTSSLAVAEHVARIL 76
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A528XT57_9HYPH (FAD-dependent oxidoreductase (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A528XT57_9HYPH)

HSP 1 Score: 86.7 bits (213), Expect = 4.690e-20
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVV 306
            +YW  + +  L P YSGIRPKL+GP  AN                            DF+IQ  +AHGV GLVNLFGIESPGLT+SLAIAEHV  ++
Sbjct:   22 KYWPELADGSLQPAYSGIRPKLSGPGEAN---------------------------GDFVIQDATAHGVEGLVNLFGIESPGLTSSLAIAEHVTRIL 91
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: UPI001BD27B79 (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=unclassified Variovorax TaxID=663243 RepID=UPI001BD27B79)

HSP 1 Score: 92.0 bits (227), Expect = 7.310e-20
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVV 306
            RYW  + +  L+P Y+G+RPK++GP       GQP                     ADF+IQGP+ HGV+GLVNLFGIESPGLT+SLAIA HVAN++
Sbjct:  295 RYWPELPDGALLPGYAGMRPKISGP-------GQP--------------------AADFMIQGPAEHGVAGLVNLFGIESPGLTSSLAIARHVANLL 364
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A1I1LH04_9RHOB (L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Tropicimonas isoalkanivorans TaxID=441112 RepID=A0A1I1LH04_9RHOB)

HSP 1 Score: 92.0 bits (227), Expect = 7.660e-20
Identity = 51/97 (52.58%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVV 306
            RYW A+ +  L PDYSGIRPKL+ P A                             ADF I+  S HGVSGLVNLFGIESPGLTASLAIAEHVA+V+
Sbjct:  301 RYWPALPDGALYPDYSGIRPKLSTPGAT---------------------------AADFTIETASTHGVSGLVNLFGIESPGLTASLAIAEHVADVI 370
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A1Q3J1T7_9PROT (FAD-dependent oxidoreductase n=1 Tax=Alphaproteobacteria bacterium 65-7 TaxID=1895712 RepID=A0A1Q3J1T7_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 1.010e-19
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANVV 306
            R+W  +   +L PDYSG+RPKL+GP AAN                           ADF I GP+AHG+ GLVNLFGIESPGLTASLAIAE+V  ++
Sbjct:  295 RWWPGLRAERLTPDYSGVRPKLSGPGAAN---------------------------ADFRIDGPAAHGLPGLVNLFGIESPGLTASLAIAEYVEEML 364
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BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Match: A0A537XDJ1_9PROT (FAD-dependent oxidoreductase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537XDJ1_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 1.060e-19
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   16 RYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDGALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVANV 303
            RYW  + +  L+P YSGIRPK+  P  A                             DFLIQGP+ HGV+GL+NLFGIESPGLT+SLAIA+HV ++
Sbjct:   41 RYWPTLPDGALMPSYSGIRPKIVPPAVATQ---------------------------DFLIQGPADHGVAGLINLFGIESPGLTSSLAIADHVGDL 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52899.12672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN35_ECTSI1.710e-2247.86FAD dependent oxidoreductase n=1 Tax=Ectocarpus si... [more]
A0A839VMH1_9BURK2.810e-2152.69L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Herbaspi... [more]
UPI001BCD6F755.340e-2153.61NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Pseudo... [more]
A0A530B3Y3_9HYPH2.800e-2048.51FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me... [more]
A0A530AAW9_9HYPH4.210e-2046.39FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me... [more]
A0A528XT57_9HYPH4.690e-2047.42FAD-dependent oxidoreductase (Fragment) n=1 Tax=Me... [more]
UPI001BD27B797.310e-2049.48NAD(P)/FAD-dependent oxidoreductase n=2 Tax=unclas... [more]
A0A1I1LH04_9RHOB7.660e-2052.58L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Tropicim... [more]
A0A1Q3J1T7_9PROT1.010e-1949.48FAD-dependent oxidoreductase n=1 Tax=Alphaproteoba... [more]
A0A537XDJ1_9PROT1.060e-1945.83FAD-dependent oxidoreductase (Fragment) n=2 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52899contigH-paniculata_contig52899:405..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog2880.D8LN35
KEGG koko:K10742,ko:K14327,ko:K20298
KEGG Pathwayko03013,ko03015,ko03030,map03013,map03015,map03030
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2-hydroxyglutarate dehydrogenase activity
EggNOG OGsCOG0579@1,KOG2665@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03032,ko04131
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930532.3125393-CDS-H-paniculata_contig52899:404..7251622930532.3125393-CDS-H-paniculata_contig52899:404..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52899 405..725 +
1691481334.9496648-CDS-H-paniculata_contig52899:404..7251691481334.9496648-CDS-H-paniculata_contig52899:404..725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52899 405..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52899.12672.1prot_H-paniculata_contig52899.12672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52899 405..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52899.12672.1

>prot_H-paniculata_contig52899.12672.1 ID=prot_H-paniculata_contig52899.12672.1|Name=mRNA_H-paniculata_contig52899.12672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MCCNDRYWSAVEEAKLVPDYSGIRPKLAGPQAANSSGGQPDEAQGDKRDG
ALPSSTKKSGPADFLIQGPSAHGVSGLVNLFGIESPGLTASLAIAEHVAN
VVETTT*
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mRNA from alignment at H-paniculata_contig52899:405..725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52899.12672.1 ID=mRNA_H-paniculata_contig52899.12672.1|Name=mRNA_H-paniculata_contig52899.12672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig52899:405..725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGTAACGACAGGTACTGGTCAGCTGTAGAGGAGGCCAAGCTCGT
GCCCGACTACAGTGGCATTCGGCCGAAGCTCGCTGGACCACAAGCAGCCA
ATAGCAGCGGGGGACAGCCAGACGAAGCTCAAGGCGACAAACGTGACGGC
GCATTGCCGAGTAGCACAAAAAAAAGTGGGCCCGCCGACTTCTTAATACA
AGGCCCTTCGGCCCACGGTGTGAGCGGGTTGGTGAACTTATTTGGCATCG
AGTCGCCTGGGCTGACAGCGTCGCTAGCGATCGCGGAACACGTTGCGAAT
GTTGTCGAAACAACGACTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig52899:405..725+

>mRNA_H-paniculata_contig52899.12672.1 ID=mRNA_H-paniculata_contig52899.12672.1|Name=mRNA_H-paniculata_contig52899.12672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig52899:405..725+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGTAACGACAGGTACTGGTCAGCTGTAGAGGAGGCCAAGCTCGT
GCCCGACTACAGTGGCATTCGGCCGAAGCTCGCTGGACCACAAGCAGCCA
ATAGCAGCGGGGGACAGCCAGACGAAGCTCAAGGCGACAAACGTGACGGC
GCATTGCCGAGTAGCACAAAAAAAAGTGGGCCCGCCGACTTCTTAATACA
AGGCCCTTCGGCCCACGGTGTGAGCGGGTTGGTGAACTTATTTGGCATCG
AGTCGCCTGGGCTGACAGCGTCGCTAGCGATCGCGGAACACGTTGCGAAT
GTTGTCGAAACAACGACTTAGATGTGCTGTAACGACAGGTACTGGTCAGC
TGTAGAGGAGGCCAAGCTCGTGCCCGACTACAGTGGCATTCGGCCGAAGC
TCGCTGGACCACAAGCAGCCAATAGCAGCGGGGGACAGCCAGACGAAGCT
CAAGGCGACAAACGTGACGGCGCATTGCCGAGTAGCACAAAAAAAAGTGG
GCCCGCCGACTTCTTAATACAAGGCCCTTCGGCCCACGGTGTGAGCGGGT
TGGTGAACTTATTTGGCATCGAGTCGCCTGGGCTGACAGCGTCGCTAGCG
ATCGCGGAACACGTTGCGAATGTTGTCGAAACAACGACTTAG
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