prot_H-paniculata_contig5289.12671.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5289.12671.1
Unique Nameprot_H-paniculata_contig5289.12671.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length273
Homology
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BLAST of mRNA_H-paniculata_contig5289.12671.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.940e-5
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 0 
Query:    1 MVDVRKKTCSHEGCSTCPSYGSAGTRKTEFCARHAKVGMV 40
            M+ VR KTC H GC+T  ++G  G++K EFC+RHA+ GMV
Sbjct:    1 MIHVRAKTCDHVGCTTRANFGVPGSKKAEFCSRHAEDGMV 40
[Close]
BLAST of mRNA_H-paniculata_contig5289.12671.1 vs. uniprot
Match: D8LNJ8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 7.740e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:    1 MVDVRKKTCSHEGCSTCPSYGSAGTRKTEFCARHAKVGMV 40
            M+DV  K C+H GC+  PSYG   ++K EFCA HA+ GMV
Sbjct:    1 MIDVVSKRCAHSGCNKWPSYGMPPSKKAEFCANHARPGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5289.12671.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH9_ECTSI2.940e-555.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LNJ8_ECTSI7.740e-555.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5289contigH-paniculata_contig5289:9848..10666 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5289.12671.1mRNA_H-paniculata_contig5289.12671.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5289 9410..11080 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5289.12671.1 ID=prot_H-paniculata_contig5289.12671.1|Name=mRNA_H-paniculata_contig5289.12671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MVDVRKKTCSHEGCSTCPSYGSAGTRKTEFCARHAKVGMVNVQSKTCSHE
GCSTQPSYGSAGTRKAEFCAQHAKAGMVGVRKKTCSHEGCSTRPSYGSAG
TRKTEFCSRHAKAGMVNMRSKTCFREGCSTQPSYGSASTGKAELCAQRAK
DGVAVDRTPKSINRGHLSPKWSSSIQIKEEVPSGEADRHDEYSGTSEKAG
KRNRRTGRSHSDISVVRENCIVKRARRDAGLTISEQPALSMPAAGMLFLD
DVTNVKTEVTVSRCSSSDQASQ*
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