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Homology
BLAST of mRNA_H-paniculata_contig5289.12671.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI) HSP 1 Score: 57.0 bits (136), Expect = 2.280e-5 Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 7 CSHEGCTSQPSYGSAGTRKTEFCAQHAKAGMVDVRS 114
C GCT PSYG AG++K EFCAQHAK GMV++RS
Sbjct: 109 CKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRS 144
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1556 |
| Cds size | 819 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5289.12671.1 >prot_H-paniculata_contig5289.12671.1 ID=prot_H-paniculata_contig5289.12671.1|Name=mRNA_H-paniculata_contig5289.12671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MVDVRKKTCSHEGCSTCPSYGSAGTRKTEFCARHAKVGMVNVQSKTCSHE
GCSTQPSYGSAGTRKAEFCAQHAKAGMVGVRKKTCSHEGCSTRPSYGSAG
TRKTEFCSRHAKAGMVNMRSKTCFREGCSTQPSYGSASTGKAELCAQRAK
DGVAVDRTPKSINRGHLSPKWSSSIQIKEEVPSGEADRHDEYSGTSEKAG
KRNRRTGRSHSDISVVRENCIVKRARRDAGLTISEQPALSMPAAGMLFLD
DVTNVKTEVTVSRCSSSDQASQ* back to topmRNA from alignment at H-paniculata_contig5289:9410..11080+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5289.12671.1 ID=mRNA_H-paniculata_contig5289.12671.1|Name=mRNA_H-paniculata_contig5289.12671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1671bp|location=Sequence derived from alignment at H-paniculata_contig5289:9410..11080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACGTGCTCCCACGAAGGCTGCACTTCACAGCCGTCGTACGGGTCGGC
GGGCACGAGAAAGACAGAGTTCTGTGCGCAGCATGCCAAAGCCGGTATGG
TAGACGTGCGGAGCAATACGTGCTCCCACGAGGGCTGCTCGACACGTCCA
TCGTACGGGTCGGCGGGCACGAGAAAGACAGAATTCTGTGCGCGGCATGC
CCAAGACGGGATGGTGGATGTGCGGAACAAGACCTGCTCCCACGAGGATT
GCTCGACATATCCGTCGTACGGGTCGGCGGGCACGAGAAAGGCAGAGTTC
TGTGCGCGGCATGCCAAAGTCGGCATGGTAAACGTGCAGAACAAGACGTG
TTCTCACGAGGGCTGCTCGACACACCCGTCGTACGGGTCGGCGGGCACGA
GAAAGGCAGAGTTCTGCTCGCAGCATGCCAAAGCCGGTATGGTAGACGTG
CGGAAAAAGACGTGTTCTCACGAGGGCTGCTCGACATGTCCGTCGTACGG
GTCGGCGGGCACGAGAAAGACAGAGTTCTGTGCGCGGCATGCCAAGGTCG
GCATGGTAAACGTGCAGAGTAAGACTTGTTCTCACGAGGGCTGCTCTACA
CAGCCGTCGTACGGGTCGGCGGGCACAAGAAAGGCAGAGTTCTGTGCGCA
GCATGCCAAAGCCGGTATGGTAGGCGTGCGGAAAAAGACGTGCTCCCACG
AGGGCTGCTCGACACGTCCGTCGTACGGGTCGGCGGGCACGAGAAAGACA
GAGTTCTGTTCGCGGCATGCCAAAGCCGGCATGGTAAACATGCGGAGTAA
GACGTGCTTTCGCGAGGGTTGCTCTACACAGCCGTCGTACGGGTCGGCAA
GCACGGGAAAGGCAGAGCTCTGTGCGCAGCGTGCCAAAGATGGGGTGGCC
GTCGACAGAACCCCGAAGAGCATTAACCGCGGCCATCTTTCGCCGAAATG
GTCAAGTTCTATACAGATAAAAGAAGAAGTGCCTTCGGGTGAGGCCGACC
GTCATGACGAGTATTCGGGAACTTCCGAGAAGGCCGGAAAGCGAAACCGA
CGTACTGGGCGTTCACACAGCGATATTTCTGTGGTACGCGAGAATTGCAT
AGTGAAAAGGGCTCGTAGGGACGCGGGATTGACAATCTCGGAGCAACCCG
CTCTTAGCATGCCCGCTGCTGGTATGTTGTTTCTCGACGACGTGACCAAC
GTCAAGACGGAGGTGACTGTGTCGCGATGTTCGTCGTCTGACCAGGCCTC
GCAGTGAGTGGCAGAGGATCCAGATCATGGAAAAGGCGGTTGTGGGTGGC
TTTCCATGCGCGAGTAATAGCCGCTCATGAATAATGGGAACCAATTTTAT
CGATGGGAACAGAGTGCCATTGTTTTTTCGTTGAGAACTTCCGAAATGGT
GCGACCTGATGGTACAGACAGGGCTGGTCATTGTGAATGAAGGTCTGTGG
TGGAGGTCAAAGACCTGGTACACGAGGTGGTGTCGATGTTAACGCTCATT
TTGACCGTTCAAAAAGAAGAAAAATGAAAGCCTCGTGGTTGGGCCGAGAG
TAGCGGCTGAGTGGCCGCGAAGCAACACAGAAGGCGCGACTTTCCTGACC
TTCCCTCAGCCTTCACCACCAATGTTCATTCACAGTGATCAGCCCTGAGT
GTTGTACCATCATGTCGCACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig5289:9410..11080+ >mRNA_H-paniculata_contig5289.12671.1 ID=mRNA_H-paniculata_contig5289.12671.1|Name=mRNA_H-paniculata_contig5289.12671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig5289:9410..11080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGACGTGCGGAAAAAGACGTGTTCTCACGAGGGCTGCTCGACATG
TCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTGCGCGGC
ATGCCAAGGTCGGCATGGTAAACGTGCAGAGTAAGACTTGTTCTCACGAG
GGCTGCTCTACACAGCCGTCGTACGGGTCGGCGGGCACAAGAAAGGCAGA
GTTCTGTGCGCAGCATGCCAAAGCCGGTATGGTAGGCGTGCGGAAAAAGA
CGTGCTCCCACGAGGGCTGCTCGACACGTCCGTCGTACGGGTCGGCGGGC
ACGAGAAAGACAGAGTTCTGTTCGCGGCATGCCAAAGCCGGCATGGTAAA
CATGCGGAGTAAGACGTGCTTTCGCGAGGGTTGCTCTACACAGCCGTCGT
ACGGGTCGGCAAGCACGGGAAAGGCAGAGCTCTGTGCGCAGCGTGCCAAA
GATGGGGTGGCCGTCGACAGAACCCCGAAGAGCATTAACCGCGGCCATCT
TTCGCCGAAATGGTCAAGTTCTATACAGATAAAAGAAGAAGTGCCTTCGG
GTGAGGCCGACCGTCATGACGAGTATTCGGGAACTTCCGAGAAGGCCGGA
AAGCGAAACCGACGTACTGGGCGTTCACACAGCGATATTTCTGTGGTACG
CGAGAATTGCATAGTGAAAAGGGCTCGTAGGGACGCGGGATTGACAATCT
CGGAGCAACCCGCTCTTAGCATGCCCGCTGCTGGTATGTTGTTTCTCGAC
GACGTGACCAACGTCAAGACGGAGGTGACTGTGTCGCGATGTTCGTCGTC
TGACCAGGCCTCGCAGTGAATGGTAGACGTGCGGAAAAAGACGTGTTCTC
ACGAGGGCTGCTCGACATGTCCGTCGTACGGGTCGGCGGGCACGAGAAAG
ACAGAGTTCTGTGCGCGGCATGCCAAGGTCGGCATGGTAAACGTGCAGAG
TAAGACTTGTTCTCACGAGGGCTGCTCTACACAGCCGTCGTACGGGTCGG
CGGGCACAAGAAAGGCAGAGTTCTGTGCGCAGCATGCCAAAGCCGGTATG
GTAGGCGTGCGGAAAAAGACGTGCTCCCACGAGGGCTGCTCGACACGTCC
GTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTTCGCGGCATG
CCAAAGCCGGCATGGTAAACATGCGGAGTAAGACGTGCTTTCGCGAGGGT
TGCTCTACACAGCCGTCGTACGGGTCGGCAAGCACGGGAAAGGCAGAGCT
CTGTGCGCAGCGTGCCAAAGATGGGGTGGCCGTCGACAGAACCCCGAAGA
GCATTAACCGCGGCCATCTTTCGCCGAAATGGTCAAGTTCTATACAGATA
AAAGAAGAAGTGCCTTCGGGTGAGGCCGACCGTCATGACGAGTATTCGGG
AACTTCCGAGAAGGCCGGAAAGCGAAACCGACGTACTGGGCGTTCACACA
GCGATATTTCTGTGGTACGCGAGAATTGCATAGTGAAAAGGGCTCGTAGG
GACGCGGGATTGACAATCTCGGAGCAACCCGCTCTTAGCATGCCCGCTGC
TGGTATGTTGTTTCTCGACGACGTGACCAACGTCAAGACGGAGGTGACTG
TGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCAGTGA back to top
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