mRNA_H-paniculata_contig5286.12667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5286.12667.1
Unique NamemRNA_H-paniculata_contig5286.12667.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A6H5KHX6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX6_9PHAE)

HSP 1 Score: 413 bits (1062), Expect = 4.000e-139
Identity = 217/364 (59.62%), Postives = 266/364 (73.08%), Query Frame = 1 
Query:   94 PTAWLLVP--LAAIRLAEGFVFPLSWNAQSSYQVTPPQSLPPPKHTNILPRHQRQLVGRGVPSNTGR---RQRPSSRRHLLGPDGKEMDVRRHREAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFKRDEWEGGTLTQEGKLTPAMNLFKGKRSAMEARNPSVSEA--EESGDPTQGG--EGDGGDEAPEWLSDAIDNGGVKLRLEDSLEGIDVPAKDLGQNKPFKF 1158
            P + L VP  LAA+    GF+ P S                  +  N LP        RG P+++     R R  SRR  LGPDGKE+D+ RHREAYSY EYWD+FY GGEAG L+ GE+YDWFFGYSRLAVYLNLH+GGAR GRVLV+GCGNSEVSPKMWE+GWK+I+++DFC PVIEAM+  H DK GMEWKVMDARD+AELETGSFDAVIDKGLTDS+M+ND+FS+MMA++S+E+ARVLKPGGVYL+ DYRDPER+QELF+RDEWEGG+LTQEGK+T  ++LFKGKRS++E + P   E   EE     QG   E    +++ EWL DAI  G + +  E  ++  +VP KD+GQ+KPFKF
Sbjct:    3 PGSRLCVPALLAAVSCVGGFILPSSGPTNRGTLRK--------RGCNGLP------TVRGSPASSAHDYCRPRRDSRRSALGPDGKEIDIIRHREAYSYAEYWDEFYAGGEAGSLKDGESYDWFFGYSRLAVYLNLHVGGARAGRVLVLGCGNSEVSPKMWENGWKDIVSIDFCNPVIEAMQSAHADKPGMEWKVMDARDMAELETGSFDAVIDKGLTDSVMYNDKFSVMMAKVSYEVARVLKPGGVYLMADYRDPERIQELFERDEWEGGSLTQEGKITSKVHLFKGKRSSVEPQTPDFLEELIEEVEGDVQGEVLEAIPQEDSQEWLVDAIAQGTISIPDEGPVD--EVPHKDVGQDKPFKF 350
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: D7G816_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G816_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 7.630e-81
Identity = 128/205 (62.44%), Postives = 162/205 (79.02%), Query Frame = 1 
Query:  556 MWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFKRDEWEGGTLTQEGKLTPAMNLFKGKRSAMEARNPSVSEA--EESGDPTQGG--EGDGGDEAPEWLSDAIDNGGVKLRLEDSLEGIDVPAKDLGQNKPFKF 1158
            MWE+GWK+I+++DFC PVIEAM+  H DK GMEWKVMDARD+ E ETGSFDAVIDKGLTDS+M+ND+FS+MMA++S+E+ARVLKPGGVYL+TDYRDPERVQELF+RDEWE G+LTQEGK+T  ++LFKGKRS++E + P   E   EE     QG   E    +++ EWL+DAI  G + +  E   +  +VP KD+GQ+KPFKF
Sbjct:    1 MWENGWKDIVSIDFCNPVIEAMQSAHADKPGMEWKVMDARDMVEFETGSFDAVIDKGLTDSVMYNDKFSVMMAKVSYEVARVLKPGGVYLMTDYRDPERVQELFERDEWESGSLTQEGKITSKVHLFKGKRSSVEPQTPDFLEELIEEVEGDVQGEVLEASPQEDSQEWLADAIAQGTITIPDEGPAD--EVPHKDVGQDKPFKF 203
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A835YJ55_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ55_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.490e-53
Identity = 92/209 (44.02%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:  322 GPDGKEMDVRRHREAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGR--VLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFKRDEWEGGTLTQEGKLTPAMNLFKG 942
            G   ++ D    R+ YS  E+WD FYT  + GE E GETYDWF GY ++   L  H   AR G   VL++GCGNSE+S +M++ GW   +N+DF KPVI+ M   H DK GMEW VMDARD++ +  GS   VIDKGL D++ H+D++   + ++  E ARVL+PGG Y+ T +  PE +  L   + W+   +   G LTP + L+ G
Sbjct:   12 GSAEEQRDYFLSRQQYSLREFWDAFYTPYDEGESEAGETYDWFLGYPKMREALLEHASHARNGAGTVLILGCGNSELSERMYDDGWTQQINIDFSKPVIDLMRSKHTDKPGMEWAVMDARDMSGVPDGSVQTVIDKGLIDALTHSDQYRDDIQKVVAESARVLRPGGSYICTSFNTPESLLPLLSNNAWQSEGVECRGNLTPTVLLYVG 220
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A6V1RBJ9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RBJ9_HETAK)

HSP 1 Score: 122 bits (307), Expect = 5.590e-28
Identity = 67/186 (36.02%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:  337 EMDVRRHREAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFK---RDEWE 885
            + D  +  ++Y+   YWDDFY           +TY+WF  Y+ L   LN  +   +E +++++GCGNS ++  M+ +GWK+I NVD+   VIE M   HK    + W  MDARDL   E  S+ AVIDKGL D++  ++ F L + Q++  + +VL+PGG Y    +  P  V+ L +   +D W+
Sbjct:   83 QADCWQDPQSYATRSYWDDFYKANS-------DTYEWFLEYNDLQSSLNTKV--PKEHQIIMLGCGNSNLTIDMYNNGWKSISNVDYSPLVIEQMAAKHKGIGDLSWHQMDARDLRFPEN-SYGAVIDKGLLDAMACSEAFDLYIPQIAQSVCKVLQPGGKYYCISFCQPSIVKPLLEENMKDHWQ 258
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: Q0J4F7_ORYSJ (Os08g0517600 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0J4F7_ORYSJ)

HSP 1 Score: 117 bits (292), Expect = 8.110e-27
Identity = 67/170 (39.41%), Postives = 97/170 (57.06%), Query Frame = 1 
Query:  361 EAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFK 870
            +AY    YWD+ Y   EAG       +DW+  Y  LA  L +++   R  R+L+ GCGNS     M + G+++I+N+D    VI+ M+  ++DK  +++  MD R++AE E+GSFDAVIDKG  DSIM         +Q+  E+ R+LK  GVY+L  Y DP     L K
Sbjct:   14 QAYGEAWYWDERYRK-EAG------PFDWYQKYPALAPLLAVYV--RRHHRLLLAGCGNSVFGENMVDDGYQDIVNIDISSVVIDQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMCGQNSQENASQMLEEVNRILKDKGVYILITYGDPSYRLRLLK 174
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: F0VMP6_NEOCL (Methyltransferase-like protein 1 n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VMP6_NEOCL)

HSP 1 Score: 117 bits (293), Expect = 1.180e-26
Identity = 69/190 (36.32%), Postives = 103/190 (54.21%), Query Frame = 1 
Query:  364 AYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFKRDEWEGGTLTQEGKLTPAMNL 933
            AY  V+YWD+ Y           E +DWF  Y+ L   L L  G     R+LV+GCG S VS +M+  G+KNI+NVD+    I  M+    DK  M +  M+A D+ + + G+FD V DKG  D ++  D     + ++  E+ARVL PGGVY++  Y  P       +R+E+ G T+T +    P++N+
Sbjct:    3 AYGKVDYWDERYR-------RDVEPFDWFQRYAGLKPIL-LEAGLEPSSRILVLGCGTSRVSEEMYADGYKNIVNVDYSSVCISHMQRRCADKEEMTFLQMNALDMKDFQVGNFDLVFDKGTMDCVLCGDNSFDNVQKMLREVARVLAPGGVYIVVSYGQPNFRLSHLQREEY-GWTVTMKTIQKPSINV 183
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A0D9X9S8_9ORYZ (Methyltransf_11 domain-containing protein n=13 Tax=Oryzinae TaxID=1648021 RepID=A0A0D9X9S8_9ORYZ)

HSP 1 Score: 117 bits (294), Expect = 1.180e-26
Identity = 68/170 (40.00%), Postives = 98/170 (57.65%), Query Frame = 1 
Query:  361 EAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFK 870
            +AY    YWD+ Y   EAG       +DW+  Y+ L+  L L++   R  R+L+VGCGNS     M + G+++I+N+D    VIE M+  ++DK  +++  MD R++AE E+GSFDAVIDKG  DSIM         + +  E+ R+LK  GVY+L  Y DP     L K
Sbjct:   11 QAYGEAWYWDERYRK-EAG------PFDWYQKYAALSPLLALYL--RRHHRLLLVGCGNSVFGENMVDDGYQDIVNIDISSVVIEQMKKKYRDKPHLKYMKMDVRNMAEFESGSFDAVIDKGTLDSIMCGQNSQENASTMLEEVNRILKDKGVYILITYGDPSYRLRLLK 171
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A067K6U1_JATCU (Methyltransf_11 domain-containing protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067K6U1_JATCU)

HSP 1 Score: 118 bits (296), Expect = 1.290e-26
Identity = 67/170 (39.41%), Postives = 98/170 (57.65%), Query Frame = 1 
Query:  361 EAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPERVQELFK 870
            +AY    YWD+ Y    A        +DW+  Y+ LA  +NL+I      RVLV+GCGNS  S  M + G+++++NVD    VI AM++ + ++  +++  MD RD++  +TGSFDAVIDKG  DSIM  ++ ++ M +   E  RVLK  GVY+L  Y  P     L K
Sbjct:   15 QAYGEPSYWDNRYANESA-------PFDWYQKYASLAPVINLYIPRHLNPRVLVIGCGNSAFSEGMVDDGYEDVVNVDISSVVINAMQNKYSNRPQLKYIQMDVRDMSAFQTGSFDAVIDKGTLDSIMCGEQNAVSMLE---ETWRVLKDKGVYILITYGTPASRLRLLK 174
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A2G5D381_AQUCA (Methyltransf_11 domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5D381_AQUCA)

HSP 1 Score: 116 bits (291), Expect = 3.320e-26
Identity = 62/162 (38.27%), Postives = 93/162 (57.41%), Query Frame = 1 
Query:  361 EAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDP 846
            +AY    YWD+ Y       L+ G  +DW+  Y  L+  L+L++  +   + LVVGCGN+ +S +M   G+ N++N+D    VIE M+  ++D+  + +  MD RD+ E ++GSFDAVIDKG  DS+M           +  E+ RVLK GGVY+L  Y  P
Sbjct:    9 QAYGEPAYWDNRYA------LDPG-PFDWYQKYPSLSPLLHLYVPSSSMSQTLVVGCGNAALSEEMVNDGYNNVINIDISSVVIENMQKKYRDRPELTYIKMDVRDMNEFQSGSFDAVIDKGTLDSLMCGTNSQQNAVAMLQEVGRVLKHGGVYILITYGAP 163
[Close]
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Match: A0A804LTQ3_MAIZE (Methyltransf_11 domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804LTQ3_MAIZE)

HSP 1 Score: 114 bits (286), Expect = 3.950e-26
Identity = 65/175 (37.14%), Postives = 101/175 (57.71%), Query Frame = 1 
Query:  361 EAYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGRVLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKVMDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPGGVYLLTDYRDPE-RVQELFKRDEW 882
            +AY    YWD+ Y   EAG       +DW+  Y  LA  L L++  A   R+L+VGCGNS     M + G+++++N+D    VIE M+  + DK  +++  MD +++++ E+GSFDAVIDKG  DS+M          ++  E+ R+LK  GVY+L  Y DP  R++ L   ++W
Sbjct:   11 QAYGEAWYWDERYRK-EAG------PFDWYQKYPALAPLLRLYL--APHQRLLLVGCGNSVFGENMIDDGYQDVVNIDISSVVIEQMKKKYHDKPQLKYMKMDVKNMSDFESGSFDAVIDKGTLDSLMCGQNSQENATKMLEEVNRILKENGVYMLITYGDPSYRLRLLKDMEKW 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5286.12667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHX6_9PHAE4.000e-13959.62Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7G816_ECTSI7.630e-8162.44Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835YJ55_9STRA2.490e-5344.02S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A6V1RBJ9_HETAK5.590e-2836.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
Q0J4F7_ORYSJ8.110e-2739.41Os08g0517600 protein n=2 Tax=Oryza sativa subsp. j... [more]
F0VMP6_NEOCL1.180e-2636.32Methyltransferase-like protein 1 n=1 Tax=Neospora ... [more]
A0A0D9X9S8_9ORYZ1.180e-2640.00Methyltransf_11 domain-containing protein n=13 Tax... [more]
A0A067K6U1_JATCU1.290e-2639.41Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A2G5D381_AQUCA3.320e-2638.27Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A804LTQ3_MAIZE3.950e-2637.14Methyltransf_11 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5286contigH-paniculata_contig5286:9226..14173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.3
Seed ortholog evalue3.4e-67
Seed eggNOG ortholog2880.D7G816
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2352@1,KOG2352@2759
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-06_009800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1490
Cds size1098
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5286.12667.1prot_H-paniculata_contig5286.12667.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5286 9289..13844 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930531.2313418-UTR-H-paniculata_contig5286:9225..92881622930531.2313418-UTR-H-paniculata_contig5286:9225..9288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5286 9226..9288 +
1691481334.4975615-UTR-H-paniculata_contig5286:9225..92881691481334.4975615-UTR-H-paniculata_contig5286:9225..9288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5286 9226..9288 +
1622930531.38189-UTR-H-paniculata_contig5286:13844..141731622930531.38189-UTR-H-paniculata_contig5286:13844..14173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5286 13845..14173 +
1691481334.5719528-UTR-H-paniculata_contig5286:13844..141731691481334.5719528-UTR-H-paniculata_contig5286:13844..14173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5286 13845..14173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930531.2556365-CDS-H-paniculata_contig5286:9288..96291622930531.2556365-CDS-H-paniculata_contig5286:9288..9629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 9289..9629 +
1691481334.5107853-CDS-H-paniculata_contig5286:9288..96291691481334.5107853-CDS-H-paniculata_contig5286:9288..9629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 9289..9629 +
1622930531.2851071-CDS-H-paniculata_contig5286:11058..112291622930531.2851071-CDS-H-paniculata_contig5286:11058..11229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 11059..11229 +
1691481334.5268505-CDS-H-paniculata_contig5286:11058..112291691481334.5268505-CDS-H-paniculata_contig5286:11058..11229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 11059..11229 +
1622930531.3084695-CDS-H-paniculata_contig5286:11583..116681622930531.3084695-CDS-H-paniculata_contig5286:11583..11668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 11584..11668 +
1691481334.538151-CDS-H-paniculata_contig5286:11583..116681691481334.538151-CDS-H-paniculata_contig5286:11583..11668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 11584..11668 +
1622930531.3244407-CDS-H-paniculata_contig5286:12018..121351622930531.3244407-CDS-H-paniculata_contig5286:12018..12135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 12019..12135 +
1691481334.546795-CDS-H-paniculata_contig5286:12018..121351691481334.546795-CDS-H-paniculata_contig5286:12018..12135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 12019..12135 +
1622930531.3362224-CDS-H-paniculata_contig5286:12942..130641622930531.3362224-CDS-H-paniculata_contig5286:12942..13064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 12943..13064 +
1691481334.5554004-CDS-H-paniculata_contig5286:12942..130641691481334.5554004-CDS-H-paniculata_contig5286:12942..13064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 12943..13064 +
1622930531.3609524-CDS-H-paniculata_contig5286:13582..138441622930531.3609524-CDS-H-paniculata_contig5286:13582..13844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 13583..13844 +
1691481334.5637712-CDS-H-paniculata_contig5286:13582..138441691481334.5637712-CDS-H-paniculata_contig5286:13582..13844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5286 13583..13844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5286.12667.1

>prot_H-paniculata_contig5286.12667.1 ID=prot_H-paniculata_contig5286.12667.1|Name=mRNA_H-paniculata_contig5286.12667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=366bp
MRSRKNMVALPTAWLLVPLAAIRLAEGFVFPLSWNAQSSYQVTPPQSLPP
PKHTNILPRHQRQLVGRGVPSNTGRRQRPSSRRHLLGPDGKEMDVRRHRE
AYSYVEYWDDFYTGGEAGELEQGETYDWFFGYSRLAVYLNLHIGGAREGR
VLVVGCGNSEVSPKMWESGWKNILNVDFCKPVIEAMEDTHKDKLGMEWKV
MDARDLAELETGSFDAVIDKGLTDSIMHNDRFSLMMAQLSFEIARVLKPG
GVYLLTDYRDPERVQELFKRDEWEGGTLTQEGKLTPAMNLFKGKRSAMEA
RNPSVSEAEESGDPTQGGEGDGGDEAPEWLSDAIDNGGVKLRLEDSLEGI
DVPAKDLGQNKPFKF*
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mRNA from alignment at H-paniculata_contig5286:9226..14173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5286.12667.1 ID=mRNA_H-paniculata_contig5286.12667.1|Name=mRNA_H-paniculata_contig5286.12667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4948bp|location=Sequence derived from alignment at H-paniculata_contig5286:9226..14173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGTTCCTTGATCGAGCTACGTGTTTGAGGTTGAACACACCATAAGTC
AAGTTTGTTCGACATGCGAAGCCGGAAAAATATGGTGGCACTTCCCACGG
CATGGCTACTTGTACCACTGGCAGCCATTCGTTTAGCTGAGGGCTTCGTT
TTTCCTCTGTCTTGGAACGCACAGTCTTCCTACCAGGTCACACCACCACA
ATCACTGCCACCCCCAAAACACACCAACATCTTACCTCGGCATCAACGGC
AGTTGGTCGGGAGAGGAGTCCCAAGCAACACTGGCCGCCGACAAAGACCA
AGCTCTAGAAGGCACTTGTTGGGGCCTGATGGCAAAGAGATGGACGTGCG
GAGACATCGGGAGGCCTACTCCTACGTGGAATACTGGGACGACTTTTACA
CAGGGTGAGACACACTACTTGAACATTCATGGGCTTTATTGCTGTATTGT
TTTGTTTCAAATGATGGGTGTTGGGCTCCTCACATGTTAGCGATGGAGTC
TTGCTGCTCAGGTGTGTTGAACAGCACACAGCAATATTAGGTTCATGTTG
GGATCTCAGAGACCCTTCAGATCTATCTCTACAATGGATTCGTCACGATT
ATTGTCTTTCTCGTATTCAGGTTCGACATTGTTTACACAAGCTGATTCAG
TTTTGGGGGTTGTTTGGTGCGCCAGCTCAGGATTTCTTTCCTACTAAAAT
ATTTTCTTAGGGCCGATTCTTACGGAGATCGAAAAATAAATATTGAAAAC
TTGATTGTTGTAAAAACTCCAAGTACAGCCATCTCTTGAAGGATCGAAAA
AACACACTCGAAAACGTAAATTTAAATTTTTCGTTTGAGAGATTTTCGAT
TCCTTATCTTACAGGATCGAAAAACTCAAAAAATGGTCTGGAGAAAATCG
TTTGGGGAGAGGACCGACAGCTTCCAGACAAACATCTGGCCATTTTTCGA
TAGCCCTCGCATTTCATCAACATCATCGATTTTCTAGGAATTCAACGAGA
TATGCAGGCATTACTCTGCTTTCCTCTCAGATTGTCAATCTTTCATAGCA
CACAGTGGGACAACCACGCTGGTCGTAGATGCCACGAGCACATATATCAT
CCGACGTGTGAGCCCGGCCGCCCTATGGCAAGTCTGGAGGAATTGCAGAC
GTAGATTACGTTGGTGCTTGGTGCTCAAGTGGTGGCTGTTGAATAGCGCG
TTTGTCTATTTGTGTTGGCAGGCCACAAATGTAACATAACTGTGTTCGTA
GAACCTGTGTGTGTGTGTGTGTGTGTGTGTGTCTACGTTGGCAGAGCGCA
CGCGAGCGGAGCAGCAGCGACCCGACGCGATACCTTACAATGGCTGAAGG
GAACCAAGGTATACATTTTCCTGGTCACTGCCCTTGAATGAACTGTCTGA
AGAGCTCTGTCGGTCGTCGACAACGCACAGCTTGCATGTGGAGGATATGC
AATGCAGCACACAATCGCACTCTCTACTCACGAAGTGTTGGCCTCGCACA
CATCCAGATAAGATTTTTGCCTAGCTCACGGTCATGACTCCTGTAGCCCA
ATAAATTATGACAAATCTACGTTTCAGGCACAATCGCAGCGTCTGCGTCA
TATTCTTGGACCCAGCATTTAAATCACCAACATATACACCACATACACAC
CCCTACCGTCCATCCTGAAACCTGCCCGTCAATGCTCCGTTTCCGAGATC
CCATCACACCACACCGATCTTTTGGAACAACAGTTTGGAAATTATGCCGA
TTTGCTTCACAAGCACCCTAGTTTTCTCAAGCAAACGCTTTACCTTCGTC
GTGAATGTGCTGTATTGTGTGTTGTGGTTACAGAGGGGAGGCAGGGGAGC
TGGAACAGGGAGAAACGTATGATTGGTTCTTCGGGTATTCTAGGCTTGCG
GTGTACCTGAATCTGCATATCGGGGGAGCACGAGAAGGGCGTGTGCTGGT
GGTGGGATGTGGCAACTCGGAGGTTTCGCCAAAAATGTGGGAGAGCGGGT
GGAAGTGAGTAAAACACGAACTTGAGATTACATGCGTGGTCTTGCTAGAC
TGGAACAGGAGAGATTTGCTAGCGAGACCGAGACGCGTTTGTTTCGTAAG
ATAGCCAGGATTCTGCTGTCCTGTGGCACACGTTATTGTGCACGGCGTTG
AGGGTTTTGAGACGTCCAATGCGTTGAGTGTGCAGGCTATACACAACATT
TTTTCATCAATGGTTGTGTCGTTCGATTGTCCGCGTATAGAGGGCCACAC
GTGCGCTGGCATCGACCGTTGTGATGTTGGCATGGAAAAATGTCTGATTT
GCACCCCTCATAAACTCTACTGATGTTAAGATTTAAAAACTGACTGTTGG
CCCTTCAGAAACATCCTGAACGTCGATTTCTGCAAACCTGTTATAGAGGC
CATGGAGGATACTCACAAGGACAAATTGGGCATGGAGTGGAAGGTGGGGT
GCGTGCGTGGGATTTGTAATGCTAGTGCTACTCACCTCGCTCTAGCGGGT
GTGGCTAGAAGCAAGACTGACATTATGTTTTGAGATATTGACCTGGACGC
AAGGAATTGGTCATTGGACAGGTTCGGAGTTTCCAAGTTCAATCTTTCGT
TTGGCTGGAGCAAGACCAACCAGCTATCCTGGAGATGGATCCATTCATGT
CCGTTGGGATCCATATTATTTGCTAAATTGTCCAGTACACCTGAAAGGCA
AGTAGGAAATACCAAAAGTGGAAAATATATCTAAAGGGATAGAGAAATGA
TAGACGGTACCGACGCTGTCTTCGTGCTTTATGCTGATCTAAGGTGATGG
ATGCGAGGGATTTGGCTGAATTGGAGACGGGATCTTTTGACGCGGTCATA
GACAAGGGGCTGACGGATTCCATCATGCACAACGATCGCTTTTCTTTAAT
GATGGCTCAGGTAATAAAATGCTTCGCACCCTGCACGCAAAAATTTGATG
TCCGTGAAATGTTGTAGGATATAAGACTTTCCAATTGTGGCACTTTTTGC
ACCCAAGACAAAGAATATCCCGCATACTGCAGAGCTTTATCTTGGCAAGG
GCAACAGTCGACTAGAAGAAACGTACCCGGCGCCATGTTAGTTACCACAG
GTGCTGGCGCGCACATGAATCTATTCATCCCCCTACAGTGCATGCGTGGG
TTTCTGCAATGCGAAGTGGATATGCTTCGCTCTATTCTCCATTAGTCTTG
TTCTCGGGGGGAGGGGGGGGGGTTCGTGTTTTGCATGCCGTAGTTATCAG
ACCACTGACCACGCGTCCTCGGAAGGACGGGAGGGGGGAACGTATGGTTT
GTATAACGATTTGAGCAGACGACAGCGCTCTGCCACAGCTTTCTTATACT
AGTGCGAAAAACAGCTGAAAAAGAAAAAGAAAAGTGCGACTTCGAAAAAT
TCACAGGACACTGGGCGACTTCCCACGCACCGTCTTCCCAGAGTTCATGT
GGATATCATCCTTATCAGGTAGCCATCAGCTAGCCAATTCCAAGCAATTT
CGGCGCCCATCAACCATGTACGAGGCGCGTTTCCATGCTTTGCTATCCCA
ATCGCTTCAACAGGTCTCCGCTTTGCTAGCAAAACACTGTTTACCCCCCC
TCTTCAAATATGATAAGAACGGGAGGCCTGTGAGAACATGATCACGACCT
TGAAGTCGAAACTCGAAACATGGACAAAATGATGTATCGATTCGTTGTCT
GGCGCCCTCACCAACAGCTGTCCTTCGAGATTGCGCGTGTATTGAAGCCT
GGAGGCGTTTACCTGCTGACGGATTATCGAGACCCTGAACGGGTGCAGGA
GCTGTTTAAGAGAGACGAGTGGGAGGGAGGAACGCTCACGTGAGTGCTCT
GCTTGTACAGAGGCAGGAATTTGGGTGCTGCTTGACTTGCGACATGCTTT
AGGCGCATGGGAGGGCGAGCCGTGTGTTCTGTTTGCCTTCGCCAAGTTAG
TTTCCAGGCTTGTGAACCTTCGACGCTGTGAGTTGTTCGTTTAACTTCGA
TAAGGGGGTGCTGCCGCGAACTCGCGTGATCCAGTGGGCAGCTTATCGGC
GTGTGCTCTCGTCATGTGTGTCATTCTCCGGAATCCATTCGCGGTTCCGA
TATACCGTGTACTGTATTATGGCACTAGTCGCACGATTCTGCCCAATAGG
GTGAGCAAAATCAGCACAACTTGCTTGTGAACGTCCTTCAGTGTCAATAC
CTTTTAACTTGTTTTGCTCGTGTCGTCGGAAAGGATGATGCAAGGACAAG
AGATTGGTGTCGTGACACATGAAACTGTCATGATGAAGAGTTTTTCTGTT
TGCAACAGACGGAGCTCCATGTTTTCCCGGCCTTTCCTGTGTGCGATCTT
GGTGCAGCCAAGAGGGGAAGCTCACTCCCGCGATGAACCTGTTCAAGGGA
AAGCGCTCAGCCATGGAAGCTCGTAACCCGTCCGTATCAGAAGCAGAAGA
AAGCGGCGATCCAACACAAGGGGGGGAGGGGGATGGCGGGGACGAGGCAC
CAGAATGGCTCTCAGATGCGATTGATAACGGCGGTGTAAAATTGCGATTG
GAGGATTCGCTGGAGGGTATTGATGTGCCAGCGAAGGACTTGGGACAAAA
TAAGCCGTTCAAGTTTTGACGTGTCCGTTGAGTCGTTGCAGGGCGCATCC
ACTTGCGGAGCGCAATATCGGAATAATCGAAGATGGCCGCCAGAAAAAAC
GAATTGCTGTCCACGTAAAATGTTTGATTTCTCTGCGTTATCGTTAGAGA
GTCAGGGGCTCCTTCTGGACAACTAAATATCTGACAGCTAATATCAAGCA
CAACCGGTCGGTTGAGGGCAGAACCATGCCGACTACTTGTCTATGATGTA
TTTTGTGAGTGTTGGACTGTCTTGCCCGAGTAGTCAAAGCTCTTAACCAT
GAACAATCACCACAGCAGCTTTGAAAGGATTAACGGAGTAACTCACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5286:9226..14173+

>mRNA_H-paniculata_contig5286.12667.1 ID=mRNA_H-paniculata_contig5286.12667.1|Name=mRNA_H-paniculata_contig5286.12667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at H-paniculata_contig5286:9226..14173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAGCCGGAAAAATATGGTGGCACTTCCCACGGCATGGCTACTTGT
ACCACTGGCAGCCATTCGTTTAGCTGAGGGCTTCGTTTTTCCTCTGTCTT
GGAACGCACAGTCTTCCTACCAGGTCACACCACCACAATCACTGCCACCC
CCAAAACACACCAACATCTTACCTCGGCATCAACGGCAGTTGGTCGGGAG
AGGAGTCCCAAGCAACACTGGCCGCCGACAAAGACCAAGCTCTAGAAGGC
ACTTGTTGGGGCCTGATGGCAAAGAGATGGACGTGCGGAGACATCGGGAG
GCCTACTCCTACGTGGAATACTGGGACGACTTTTACACAGGATGCGAAGC
CGGAAAAATATGGTGGCACTTCCCACGGCATGGCTACTTGTACCACTGGC
AGCCATTCGTTTAGCTGAGGGCTTCGTTTTTCCTCTGTCTTGGAACGCAC
AGTCTTCCTACCAGGTCACACCACCACAATCACTGCCACCCCCAAAACAC
ACCAACATCTTACCTCGGCATCAACGGCAGTTGGTCGGGAGAGGAGTCCC
AAGCAACACTGGCCGCCGACAAAGACCAAGCTCTAGAAGGCACTTGTTGG
GGCCTGATGGCAAAGAGATGGACGTGCGGAGACATCGGGAGGCCTACTCC
TACGTGGAATACTGGGACGACTTTTACACAGGAGGGGAGGCAGGGGAGCT
GGAACAGGGAGAAACGTATGATTGGTTCTTCGGGTATTCTAGGCTTGCGG
TGTACCTGAATCTGCATATCGGGGGAGCACGAGAAGGGCGTGTGCTGGTG
GTGGGATGTGGCAACTCGGAGGTTTCGCCAAAAATGTGGGAGAGCGGGTG
GAAAGGGGAGGCAGGGGAGCTGGAACAGGGAGAAACGTATGATTGGTTCT
TCGGGTATTCTAGGCTTGCGGTGTACCTGAATCTGCATATCGGGGGAGCA
CGAGAAGGGCGTGTGCTGGTGGTGGGATGTGGCAACTCGGAGGTTTCGCC
AAAAATGTGGGAGAGCGGGTGGAAAAACATCCTGAACGTCGATTTCTGCA
AACCTGTTATAGAGGCCATGGAGGATACTCACAAGGACAAATTGGGCATG
GAGTGGAAGAAACATCCTGAACGTCGATTTCTGCAAACCTGTTATAGAGG
CCATGGAGGATACTCACAAGGACAAATTGGGCATGGAGTGGAAGGTGATG
GATGCGAGGGATTTGGCTGAATTGGAGACGGGATCTTTTGACGCGGTCAT
AGACAAGGGGCTGACGGATTCCATCATGCACAACGATCGCTTTTCTTTAA
TGATGGCTCAGGTGATGGATGCGAGGGATTTGGCTGAATTGGAGACGGGA
TCTTTTGACGCGGTCATAGACAAGGGGCTGACGGATTCCATCATGCACAA
CGATCGCTTTTCTTTAATGATGGCTCAGCTGTCCTTCGAGATTGCGCGTG
TATTGAAGCCTGGAGGCGTTTACCTGCTGACGGATTATCGAGACCCTGAA
CGGGTGCAGGAGCTGTTTAAGAGAGACGAGTGGGAGGGAGGAACGCTCAC
CTGTCCTTCGAGATTGCGCGTGTATTGAAGCCTGGAGGCGTTTACCTGCT
GACGGATTATCGAGACCCTGAACGGGTGCAGGAGCTGTTTAAGAGAGACG
AGTGGGAGGGAGGAACGCTCACCCAAGAGGGGAAGCTCACTCCCGCGATG
AACCTGTTCAAGGGAAAGCGCTCAGCCATGGAAGCTCGTAACCCGTCCGT
ATCAGAAGCAGAAGAAAGCGGCGATCCAACACAAGGGGGGGAGGGGGATG
GCGGGGACGAGGCACCAGAATGGCTCTCAGATGCGATTGATAACGGCGGT
GTAAAATTGCGATTGGAGGATTCGCTGGAGGGTATTGATGTGCCAGCGAA
GGACTTGGGACAAAATAAGCCGTTCAAGTTTTGACCAAGAGGGGAAGCTC
ACTCCCGCGATGAACCTGTTCAAGGGAAAGCGCTCAGCCATGGAAGCTCG
TAACCCGTCCGTATCAGAAGCAGAAGAAAGCGGCGATCCAACACAAGGGG
GGGAGGGGGATGGCGGGGACGAGGCACCAGAATGGCTCTCAGATGCGATT
GATAACGGCGGTGTAAAATTGCGATTGGAGGATTCGCTGGAGGGTATTGA
TGTGCCAGCGAAGGACTTGGGACAAAATAAGCCGTTCAAGTTTTGA
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