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Homology
BLAST of mRNA_H-paniculata_contig5286.12666.1 vs. uniprot
Match: A0A6H5KJQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ9_9PHAE) HSP 1 Score: 127 bits (318), Expect = 7.110e-33 Identity = 108/206 (52.43%), Postives = 126/206 (61.17%), Query Frame = 1
Query: 37 MTQFLRAVSENRMEDALALAQTALKYEPKNKLMLDYQETLAQYINNERELAAEGRGSDETSSSGSXXXXXXXXXXXXXXXXXXXXXXXQSRHDGPEDETKLSVHDSHEATGIEVSA----VRRFRRMSTACTL-------DSAFDKQEEQRLGRILRDLRERRALHSMLALSTWDEDKFAASSREVETVLWNYSPAGAKQSNLKRA 621
MTQFLRAVSENRME ALALAQT LK+EP+N ++LDYQ TLAQYINNERELA+ +E + XXXXXXXXXXXXXXXX S G +D + + EA+ E+S V R C + S DKQE QRLG +LRDLR+ R S S WDEDKFAAS REVE VL + P A+Q+ KRA
Sbjct: 1 MTQFLRAVSENRMEQALALAQTILKFEPRNAIILDYQATLAQYINNERELASV---REEDADXXXXXXXXXXXXXXXXXXXGNAADVSSSTATGSDDGS------TEEASAEEISGEDKDVAGAPRGDAPCQVAQKASRQGSVHDKQELQRLGGVLRDLRKTREARSQEIESRWDEDKFAASQREVEAVLRKFLPDAARQAAEKRA 197
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-06_009810.1 |
| Exons | 6 |
| Model size | 654 |
| Cds size | 654 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5286.12666.1 >prot_H-paniculata_contig5286.12666.1 ID=prot_H-paniculata_contig5286.12666.1|Name=mRNA_H-paniculata_contig5286.12666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
EKQAETGAPLRLMTQFLRAVSENRMEDALALAQTALKYEPKNKLMLDYQE
TLAQYINNERELAAEGRGSDETSSSGSSRGSSTSTAEGSTASESDTSSGG
QSRHDGPEDETKLSVHDSHEATGIEVSAVRRFRRMSTACTLDSAFDKQEE
QRLGRILRDLRERRALHSMLALSTWDEDKFAASSREVETVLWNYSPAGAK
QSNLKRAKVSTSPRDYK* back to topmRNA from alignment at H-paniculata_contig5286:5093..8680- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5286.12666.1 ID=mRNA_H-paniculata_contig5286.12666.1|Name=mRNA_H-paniculata_contig5286.12666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3588bp|location=Sequence derived from alignment at H-paniculata_contig5286:5093..8680- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGCAGGCCGAAACCGGAGCGCCGCTACGTCTCATGACTCAATTTTT
ACGGGCTGTGTCTGAAAACCGGATGGAGGATGCTTTAGCTCTCGCGCAAA
CAGGTAGGGCAGAGGATCTGTGAAGGAACGGACGACGTCACTGACGCTCT
AGATCGTATAGATGATCATACCAGGATCTGACAGCTAGCTCCTAGTTTGC
AAGCTGGGACACCTCTGAAGCTTGACGACCAGCAGCGAGCAAATTGAGTT
TGAAGGCCCTGTCATTCGACAGCTTTACGTACGAGAATGAAGAAGTTGGA
ATGCCTAGACACCACTGATCATGGTGCTGCTTCCTGTCAAAAATCTGTTC
TCGATCTGCACTACCTGAAGCGAATTTAAGCCGAGAAGTACGCGGCTTAG
AGTATAACACCTAAACTCTATATTAAAGTATCAAACATGAAAACAGAGTC
CTCGGTGAGACGTTTTTCGTGCGGTAAAAAATCATGGGCACATTCGTTGT
TGCACTTGAGCAGGTGTCAAGGATGTTGGCCTATGATAGTCTCTCGTGTT
CTCATTTTACTCTAACTGTTGCAGCGTTGAAGTACGAGCCAAAAAACAAG
CTCATGCTGGATTATCAAGAAACATTGGCACAGTACATCAACAACGGTGA
GATGTATGCTCGGGAACATGACATTGACACTGCAGTCCGGCCATGATAAC
GTTGCAATACAGTACCGGCTTGCTCATAAAAAACGCGAATTTAAGGAAAT
CAGGCTGAGATTTTTCAAATTCATGAGAATTATAGGCCAAGAAATGAGGC
TCCAATGGTGAACCCTCACTAATTCCTATATAAAGAGCAAGAAACAGTAC
TACCCATGATTCTCAATTTTCTGTTTTTTATGAGCGGGCCGTCACTGTAC
TACAGAGGGGAATTTACAGTTCAATTTGCATGCTGAAAAAAAATTACTAA
ACACTGCCATTTAAAGCCGCGGTACACCACGTTTCCGTCTGTAGTATACT
TTCGTGTGCTTAATTATTATATAAAGCAATGTACTCACTGTGCTTACTCG
GCCTAATGCGTTGTGTATATTGCTAATTGCGTGGAAACAGAGCGTGAGCT
GGCGGCAGAAGGCAGGGGAAGCGATGAGACCTCCAGCAGCGGCAGCAGTC
GCGGCTCCTCCACGAGTACTGCTGAAGGCTCCACGGCGTCAGGTGATACA
TGAAATTATAAGAGCGTACTCAAGGACAAAAAAAATGGTGCGCTAAACAA
AACGCTTTGCAGGGTTATATGACGTACTGGAGGACATCGGGGGTATTAGA
TTATTAACAACCCAGTGGTCTAACATGTACAAACGCAAATACAAAACGTG
GCAGGGTCAATGGAGTAAGGTCGTTCTTAGATGGGGAAGACAGCCAAATG
TTGCTACAAAACAGGTGATTACAAATGACATGGCGCAATTCAGAACCATG
TCTGTTTATTGGAACCGGTGTTATTCCGGGGGTGAACATACGTTTCATTC
CGATGTCGGAGCATGATGCCTTGAGTGGGCGTTTGACCGTACCGAACTTC
ACCAATAATATGCTTTATTTTTTCTTATATTTTCTGTCCTGATGGGCACC
AATTCTTCTCATACAGATTTCCCGGAATAGGAGCTATATCGGAGTCAAAT
ACAACAGCCTTTTGGCCGATTGTTCCGAAACGTCGAGCATTTTTCGCCTT
GCCCTGTACAAAAGAATGCCGTCATTTCTTCAGCCTAGCTTCACCATCCC
GATATGTACAGCACTAAGTTTGCGGCGTTTGATCAAACGACCTTACCTCT
TAGTCAACGAACCCATAATTCTGTAATATGAATAAGAAGACTGCAACGAA
CCTCTCATAATCCATTTAGTTGTCAACAACACGGGTATCGTGCGTCATCT
ATGGTGTGTTCTTCAGCATGCGATGTTCTGACCTCAGTTGGAGCCCTGCA
AAGGTAAATACATATTTAGTTCAGAAATTCTCCATTGGCTGTTTCTCGAA
ACTGGTACCGCCTTTCGGAACCCCTATATGCTTCAACTAAGTGCACCGGT
CGTGCGTAAGTTTTGCGCAAATTACGGAAGAAAAAATAGAAGAAAAAAGC
GACGACGTCGGGGAACCAGTCAAAAAGACTCAAAGATACACGCCTCCCGC
GTACAATTCTCGGCTCATCTCTACAGTGATGGCGCCGATCGGCGTGGTAG
GTAGCTCAGACTAAACGGTTTGCTCTCAATTGAAAATTGAACAACATGGA
AACGTATTCATAAATCACGAAGTTATGAACAATAGCGAAAAGCGCATCTT
GAAGCCTTCTTCATATTGATGGACACATGTACTTTCCTTTGGCTTTAAAG
CTCGAACTCCCATTGGTTTGTTTAATGGCATGTTTGCTTTCCATCCAGAA
AGTGATACATCATCTGGAGGGCAGAGCAGACACGACGGTCCTGAAGATGA
AACGAAACTGAGTGTGCATGATTCCCATGAAGCAACAGGAATTGAGGTGA
GCGCTGTCCGACGCTTTCGTCGGATGAGTACCGCATGTACCTTGTATCCT
GGGGCTAGAGCCCATTCTACAAGTGTTACGGTGCTCATGTACCAAGCCAT
TTATATGACAGCGCCTTGGTTCCGTTTGTAGCGCCGAAATGCCGAGAGGT
TGTATCCAACCACGTGTTTTTTTGGCGCGAAGTGGCCCGCACTCGGTAGG
GAGCATACTAAATGTATCGGTGTTTGAGCGGCTTTCGGGTACATGGGACA
GAAGTTGCGCCTTGTAGCAGAGAACGAAATCCGTGTCGATAACACAGGTG
CACAAATTAGTTGCACTGTTAAGTCTGGCTTCGTCTCCACTGGAAGGCCG
GAAGTCGCGATACCGAGGAAAGCGGAAAAATACATGGGCTATCCTTAGCG
AAGATTGAGGCTCCCCTATTGGACTAAGTTTAACGTTTCGGTTGCGCTGC
TAAGGCACTACCAACGATTCGCAGAAAAAACGCTCGAAAGCAAACGCTTG
AATTTACTACTGATTTCGCAGAGCCCTCTGAGGGATTCTGCATTCGATAA
ACAAGAGGAGCAGAGACTCGGGCGGATTCTTCGTGATTTAAGGGAGAGAA
GGGCCCTCCACTCGATGTTAGCTTTGTCAACATGGGATGAAGATAAATTC
GCCGCTAGCAGCAGGTTTGGTAACTTCCGTAGATTGCGTTCGTATTTGGC
CAATTGTCTTTGTTCACCTTTGGACCAAACGAAGCAGTAGAAATAAATAC
ATCTCCTTGCAATTTCCTCTTATTCGTTTGGTTGACCATATTTGGAGTGG
AATATTTCCTCAGCAAGGGGGGTTGCCACGTTCTAATTGACTCGCTAAAA
GATACCCAAAACTTTCAGCACCGATTTACAATGGGTTGAAGTACTCGTCC
TTTCTCGCCACCGAATATGGCAATGTACTAATTCTCACCCCGTTCTCTCA
CTTGGCTGCCCTTTTTTCTGCCGACGTCCTCGAGTCAGGGAAGTTGAGAC
TGTCCTGTGGAACTATTCGCCCGCAGGCGCAAAGCAATCCAACCTAAAAC
GTGCCAAAGTCAGCACTTCTCCTCGCGACTACAAGTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig5286:5093..8680- >mRNA_H-paniculata_contig5286.12666.1 ID=mRNA_H-paniculata_contig5286.12666.1|Name=mRNA_H-paniculata_contig5286.12666.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig5286:5093..8680- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAGCAGGCCGAAACCGGAGCGCCGCTACGTCTCATGACTCAATTTTT
ACGGGCTGTGTCTGAAAACCGGATGGAGGATGCTTTAGCTCTCGCGCAAA
CAGGAAAAGCAGGCCGAAACCGGAGCGCCGCTACGTCTCATGACTCAATT
TTTACGGGCTGTGTCTGAAAACCGGATGGAGGATGCTTTAGCTCTCGCGC
AAACAGCGTTGAAGTACGAGCCAAAAAACAAGCTCATGCTGGATTATCAA
GAAACATTGGCACAGTACATCAACAACGCGTTGAAGTACGAGCCAAAAAA
CAAGCTCATGCTGGATTATCAAGAAACATTGGCACAGTACATCAACAACG
AGCGTGAGCTGGCGGCAGAAGGCAGGGGAAGCGATGAGACCTCCAGCAGC
GGCAGCAGTCGCGGCTCCTCCACGAGTACTGCTGAAGGCTCCACGGCGTC
AGAGCGTGAGCTGGCGGCAGAAGGCAGGGGAAGCGATGAGACCTCCAGCA
GCGGCAGCAGTCGCGGCTCCTCCACGAGTACTGCTGAAGGCTCCACGGCG
TCAGAAAGTGATACATCATCTGGAGGGCAGAGCAGACACGACGGTCCTGA
AGATGAAACGAAACTGAGTGTGCATGATTCCCATGAAGCAACAGGAATTG
AGGTGAGCGCTGTCCGACGCTTTCGTCGGATGAGTACCGCATGTACCTTA
AAGTGATACATCATCTGGAGGGCAGAGCAGACACGACGGTCCTGAAGATG
AAACGAAACTGAGTGTGCATGATTCCCATGAAGCAACAGGAATTGAGGTG
AGCGCTGTCCGACGCTTTCGTCGGATGAGTACCGCATGTACCTTGGATTC
TGCATTCGATAAACAAGAGGAGCAGAGACTCGGGCGGATTCTTCGTGATT
TAAGGGAGAGAAGGGCCCTCCACTCGATGTTAGCTTTGTCAACATGGGAT
GAAGATAAATTCGCCGCTAGCAGCAGGGATTCTGCATTCGATAAACAAGA
GGAGCAGAGACTCGGGCGGATTCTTCGTGATTTAAGGGAGAGAAGGGCCC
TCCACTCGATGTTAGCTTTGTCAACATGGGATGAAGATAAATTCGCCGCT
AGCAGCAGGGAAGTTGAGACTGTCCTGTGGAACTATTCGCCCGCAGGCGC
AAAGCAATCCAACCTAAAACGTGCCAAAGTCAGCACTTCTCCTCGCGACT
ACAAGTGAGGAAGTTGAGACTGTCCTGTGGAACTATTCGCCCGCAGGCGC
AAAGCAATCCAACCTAAAACGTGCCAAAGTCAGCACTTCTCCTCGCGACT
ACAAGTGA back to top
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