mRNA_H-paniculata_contig52839.12663.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52839.12663.1
Unique NamemRNA_H-paniculata_contig52839.12663.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52839.12663.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.510e-8
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    7 VQAQELFPDFDIPGKSLWVEAFNWGCGAMNRTATAANSGCLSPYQMWYGRPPPF-SLPPFL 186
            +QA+E+FPD      +LW EA    C  +N TAT AN G  SPY+M++G+PPP  S+ PFL
Sbjct:  396 IQAKEMFPDAPTD-PALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPPAGSVYPFL 455
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BLAST of mRNA_H-paniculata_contig52839.12663.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.530e-8
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    7 VQAQELFPDFDIPGKSLWVEAFNWGCGAMNRTATAANSGCLSPYQMWYGRPPPF-SLPPFL 186
            +QA+E+FPD      +LW EA    C  +N TAT AN G  SPY+M++G+PPP  S+ PFL
Sbjct:  878 IQAKEMFPDAPTD-PALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPPAGSVYPFL 937
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BLAST of mRNA_H-paniculata_contig52839.12663.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.110e-7
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 VQAQELFPDFDIPGKSLWVEAFNWGCGAMNRTATAANSGCLSPYQMWYGRPPP 165
            +QA+E+FPD      +LW EA    C  +N TAT AN G  SPY+M++G+PPP
Sbjct:  139 IQAKEMFPDAPTD-PALWAEAIACACHQLNCTATTANPGDKSPYEMFHGKPPP 190
[Close]
BLAST of mRNA_H-paniculata_contig52839.12663.1 vs. uniprot
Match: A0A6H5JKW0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW0_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.730e-5
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   28 PDFDIPGKSLWVEAFNWGCGAMNRTATAANSGCLSPYQMWYGRPPPFSLPPF 183
            P  D  G  LW+E+  W   A+N++AT AN G  SPY+++ G+  PF + PF
Sbjct:  517 PGLDERGDRLWMESAKWAADALNQSATKANPGRRSPYELFTGQQGPFRVLPF 568
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52839.12663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE4.510e-849.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE4.530e-849.18Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE1.110e-749.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW0_9PHAE1.730e-542.31Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52839contigH-paniculata_contig52839:967..1153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size187
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.721233-CDS-H-paniculata_contig52839:966..11521622930530.721233-CDS-H-paniculata_contig52839:966..1152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52839 967..1152 +
1691481334.2822874-CDS-H-paniculata_contig52839:966..11521691481334.2822874-CDS-H-paniculata_contig52839:966..1152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52839 967..1152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52839.12663.1prot_H-paniculata_contig52839.12663.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52839 967..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52839.12663.1

>prot_H-paniculata_contig52839.12663.1 ID=prot_H-paniculata_contig52839.12663.1|Name=mRNA_H-paniculata_contig52839.12663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
ATVQAQELFPDFDIPGKSLWVEAFNWGCGAMNRTATAANSGCLSPYQMWY
GRPPPFSLPPFL
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mRNA from alignment at H-paniculata_contig52839:967..1153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52839.12663.1 ID=mRNA_H-paniculata_contig52839.12663.1|Name=mRNA_H-paniculata_contig52839.12663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=187bp|location=Sequence derived from alignment at H-paniculata_contig52839:967..1153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACAGTACAAGCACAAGAGCTTTTTCCCGATTTCGACATCCCTGGAAA
ATCTTTATGGGTCGAAGCTTTTAACTGGGGTTGCGGCGCGATGAATCGTA
CCGCAACAGCGGCAAACTCTGGTTGCCTGTCACCGTACCAGATGTGGTAT
GGTCGCCCTCCGCCGTTTAGTCTTCCTCCGTTTCTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig52839:967..1153+

>mRNA_H-paniculata_contig52839.12663.1 ID=mRNA_H-paniculata_contig52839.12663.1|Name=mRNA_H-paniculata_contig52839.12663.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig52839:967..1153+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACAGTACAAGCACAAGAGCTTTTTCCCGATTTCGACATCCCTGGAAA
ATCTTTATGGGTCGAAGCTTTTAACTGGGGTTGCGGCGCGATGAATCGTA
CCGCAACAGCGGCAAACTCTGGTTGCCTGTCACCGTACCAGATGTGGTAT
GGTCGCCCTCCGCCGTTTAGTCTTCCTCCGTTTCTCGCTACAGTACAAGC
ACAAGAGCTTTTTCCCGATTTCGACATCCCTGGAAAATCTTTATGGGTCG
AAGCTTTTAACTGGGGTTGCGGCGCGATGAATCGTACCGCAACAGCGGCA
AACTCTGGTTGCCTGTCACCGTACCAGATGTGGTATGGTCGCCCTCCGCC
GTTTAGTCTTCCTCCGTTTCTC
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