mRNA_H-paniculata_contig5281.12661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5281.12661.1
Unique NamemRNA_H-paniculata_contig5281.12661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5281.12661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5281contigH-paniculata_contig5281:114..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1058
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5281.12661.1prot_H-paniculata_contig5281.12661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5281 375..938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.2842865-UTR-H-paniculata_contig5281:113..3741622930530.2842865-UTR-H-paniculata_contig5281:113..374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5281 114..374 +
1691481334.1163104-UTR-H-paniculata_contig5281:113..3741691481334.1163104-UTR-H-paniculata_contig5281:113..374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5281 114..374 +
1622930530.3281913-UTR-H-paniculata_contig5281:938..11711622930530.3281913-UTR-H-paniculata_contig5281:938..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5281 939..1171 +
1691481334.1362014-UTR-H-paniculata_contig5281:938..11711691481334.1362014-UTR-H-paniculata_contig5281:938..1171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5281 939..1171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.303037-CDS-H-paniculata_contig5281:374..9381622930530.303037-CDS-H-paniculata_contig5281:374..938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5281 375..938 +
1691481334.1277106-CDS-H-paniculata_contig5281:374..9381691481334.1277106-CDS-H-paniculata_contig5281:374..938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5281 375..938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5281.12661.1

>prot_H-paniculata_contig5281.12661.1 ID=prot_H-paniculata_contig5281.12661.1|Name=mRNA_H-paniculata_contig5281.12661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MGLQVWSFLFSDCCSETQNSVRKKIIPSKPNQNAILLSSSLVDNKNHIDY
TTAAEISVRKNAVKNSRKPFTMHFVLVVRFESRTIHRERYSATFQEKPEY
EVTHPPYPLPPPLPQYPPRSKVTRHAKHAHLDSQRTETLASLSFHTRHKT
VPKNHHQIVFPLSCRLTKIHTSNIQQNRLFCPGSAFS*
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mRNA from alignment at H-paniculata_contig5281:114..1171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5281.12661.1 ID=mRNA_H-paniculata_contig5281.12661.1|Name=mRNA_H-paniculata_contig5281.12661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-paniculata_contig5281:114..1171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTATATATTCTAAATTTGCTCGTGAGCATACCCAACCACAATTGCAG
GTTTCATAACCTCGGCACGTACGTGTACTTAGAAAATAAATAATGATAGG
TTGAGACAAATGTTCGCCGCCCCTTACCTCGGTACACCTCTTGGACCAGA
GTTTCTACCTCTTAATGCAGCGGACTATTTTAAATATCTCTGAATGTATT
CACCTGTTTCTCTCAAGGCAGGCTCAACGTATCATCACTCTCAACAAATT
TCTCGCGAAATATGGGCTTGCAAGTCTGGTCATTTCTGTTTTCCGACTGT
TGTTCTGAAACACAGAACTCTGTTCGAAAAAAAATCATTCCGTCAAAACC
AAACCAAAATGCCATATTACTCTCCTCATCGCTGGTTGATAACAAAAATC
ACATCGATTACACCACCGCCGCGGAAATTTCTGTGAGGAAAAACGCCGTG
AAAAACTCACGAAAACCATTTACAATGCATTTCGTGCTCGTTGTTCGTTT
TGAATCTAGAACAATACACAGGGAACGGTACAGTGCTACATTTCAAGAAA
AACCAGAGTATGAGGTAACGCATCCTCCATACCCTCTCCCGCCCCCTCTC
CCTCAATACCCCCCACGATCAAAGGTCACACGCCACGCCAAGCACGCGCA
CCTTGACTCCCAACGAACCGAAACACTAGCCTCACTCTCTTTCCACACCC
GCCATAAAACTGTTCCGAAAAATCATCACCAAATCGTATTCCCACTATCT
TGCAGACTGACCAAAATCCACACATCCAACATTCAACAAAACCGTTTGTT
TTGTCCTGGTAGTGCTTTCTCGTGAGAGAGCTGTCTCATCATATTTTCCT
ACCGCGGCGGCTTCTCACACATTTTTTTTCTGCTTCCTCCTTTTGCAATT
GTTCATCGATTCTTATCAAAGTGGTGGGTGTACGACACGCCATACAAGAT
AACTTCGGCACAAAATAACAGAGACGGAACGAACAGTCACGGTAAAAAAT
CACTTCAAGCCTAACAACCCCAACTACCAAACCAAGAAGGAGGGGACACG
TTACCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5281:114..1171+

>mRNA_H-paniculata_contig5281.12661.1 ID=mRNA_H-paniculata_contig5281.12661.1|Name=mRNA_H-paniculata_contig5281.12661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig5281:114..1171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTTGCAAGTCTGGTCATTTCTGTTTTCCGACTGTTGTTCTGAAAC
ACAGAACTCTGTTCGAAAAAAAATCATTCCGTCAAAACCAAACCAAAATG
CCATATTACTCTCCTCATCGCTGGTTGATAACAAAAATCACATCGATTAC
ACCACCGCCGCGGAAATTTCTGTGAGGAAAAACGCCGTGAAAAACTCACG
AAAACCATTTACAATGCATTTCGTGCTCGTTGTTCGTTTTGAATCTAGAA
CAATACACAGGGAACGGTACAGTGCTACATTTCAAGAAAAACCAGAGTAT
GAGGTAACGCATCCTCCATACCCTCTCCCGCCCCCTCTCCCTCAATACCC
CCCACGATCAAAGGTCACACGCCACGCCAAGCACGCGCACCTTGACTCCC
AACGAACCGAAACACTAGCCTCACTCTCTTTCCACACCCGCCATAAAACT
GTTCCGAAAAATCATCACCAAATCGTATTCCCACTATCTTGCAGACTGAC
CAAAATCCACACATCCAACATTCAACAAAACCGTTTGTTTTGTCCTGGTA
GTGCTTTCTCGTGAATGGGCTTGCAAGTCTGGTCATTTCTGTTTTCCGAC
TGTTGTTCTGAAACACAGAACTCTGTTCGAAAAAAAATCATTCCGTCAAA
ACCAAACCAAAATGCCATATTACTCTCCTCATCGCTGGTTGATAACAAAA
ATCACATCGATTACACCACCGCCGCGGAAATTTCTGTGAGGAAAAACGCC
GTGAAAAACTCACGAAAACCATTTACAATGCATTTCGTGCTCGTTGTTCG
TTTTGAATCTAGAACAATACACAGGGAACGGTACAGTGCTACATTTCAAG
AAAAACCAGAGTATGAGGTAACGCATCCTCCATACCCTCTCCCGCCCCCT
CTCCCTCAATACCCCCCACGATCAAAGGTCACACGCCACGCCAAGCACGC
GCACCTTGACTCCCAACGAACCGAAACACTAGCCTCACTCTCTTTCCACA
CCCGCCATAAAACTGTTCCGAAAAATCATCACCAAATCGTATTCCCACTA
TCTTGCAGACTGACCAAAATCCACACATCCAACATTCAACAAAACCGTTT
GTTTTGTCCTGGTAGTGCTTTCTCGTGA
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