mRNA_H-paniculata_contig5280.12660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5280.12660.1
Unique NamemRNA_H-paniculata_contig5280.12660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5280.12660.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.210e-35
Identity = 81/163 (49.69%), Postives = 92/163 (56.44%), Query Frame = 3 
Query:  108 PIQEGWFKPKGNVNGKQGKEPMSTEDTAEVLWSAKNG----HDGLPRK---------------GAF*NKTMILVLDDTSCHQGYYAEVGVTESNKETQKTALLRKYKAGSITVWPEVPGGKGGNMVMD*NVEVPERGSFSNSNSRCGKSVSGVEVALATRAFF 539
            PI EGWFKPK    G+QG   M TE+TAE+LW AK      HD +  K                 + NK MILVLD+ S H GY AEVGV ESN +   TALLRKYK   ITV  EV    G         +VP  G+F  +NS+CGK VSG EVALATRAFF
Sbjct:  328 PIPEGWFKPKDKGKGRQGAGSMGTEETAEMLWQAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKY-TFQVPATGTFPQANSKCGKGVSGPEVALATRAFF 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5280.12660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.210e-3549.69Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5280contigH-paniculata_contig5280:12657..13228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size572
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5280.12660.1prot_H-paniculata_contig5280.12660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5280 12917..13093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.2175694-UTR-H-paniculata_contig5280:12656..129161622930530.2175694-UTR-H-paniculata_contig5280:12656..12916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5280 12657..12916 +
1691481334.0636423-UTR-H-paniculata_contig5280:12656..129161691481334.0636423-UTR-H-paniculata_contig5280:12656..12916Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5280 12657..12916 +
1622930530.244711-UTR-H-paniculata_contig5280:13093..132281622930530.244711-UTR-H-paniculata_contig5280:13093..13228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5280 13094..13228 +
1691481334.1025329-UTR-H-paniculata_contig5280:13093..132281691481334.1025329-UTR-H-paniculata_contig5280:13093..13228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5280 13094..13228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930530.2297997-CDS-H-paniculata_contig5280:12916..130931622930530.2297997-CDS-H-paniculata_contig5280:12916..13093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5280 12917..13093 +
1691481334.078615-CDS-H-paniculata_contig5280:12916..130931691481334.078615-CDS-H-paniculata_contig5280:12916..13093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5280 12917..13093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5280.12660.1

>prot_H-paniculata_contig5280.12660.1 ID=prot_H-paniculata_contig5280.12660.1|Name=mRNA_H-paniculata_contig5280.12660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MILVLDDTSCHQGYYAEVGVTESNKETQKTALLRKYKAGSITVWPEVPGG
KGGNMVMD*
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mRNA from alignment at H-paniculata_contig5280:12657..13228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5280.12660.1 ID=mRNA_H-paniculata_contig5280.12660.1|Name=mRNA_H-paniculata_contig5280.12660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at H-paniculata_contig5280:12657..13228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGTTGTGGAGGATGGGATGGGTCGTACCTCAGGCAAAGGCTTGCGGT
TGATTATGATTCACGCAAATTTCTTTTCGTTGGTACTTCGGTATACAAAG
GGCTAAACCTATTCAGGAGGGGTGGTTCAAACCGAAGGGTAACGTGAATG
GCAAGCAAGGAAAGGAGCCGATGAGTACAGAGGATACCGCAGAGGTGCTT
TGGTCGGCCAAAAATGGTCATGACGGATTACCACGCAAAGGTGCTTTCTG
AAATAAGACGATGATCCTTGTTCTCGACGACACATCTTGCCACCAGGGAT
ATTACGCGGAGGTGGGGGTGACTGAAAGTAATAAAGAGACGCAAAAAACA
GCGCTGTTACGCAAGTACAAGGCCGGATCAATCACCGTTTGGCCTGAGGT
ACCGGGCGGCAAAGGCGGAAATATGGTTATGGACTAAAACGTCGAAGTAC
CAGAGAGAGGGTCATTCTCCAACTCGAATTCGAGGTGTGGTAAAAGTGTC
AGCGGTGTGGAGGTGGCATTGGCCACTCGAGCATTTTTCACCTAAAATAC
CCTCACAGGCTTCTGGAGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5280:12657..13228+

>mRNA_H-paniculata_contig5280.12660.1 ID=mRNA_H-paniculata_contig5280.12660.1|Name=mRNA_H-paniculata_contig5280.12660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig5280:12657..13228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCTTGTTCTCGACGACACATCTTGCCACCAGGGATATTACGCGGA
GGTGGGGGTGACTGAAAGTAATAAAGAGACGCAAAAAACAGCGCTGTTAC
GCAAGTACAAGGCCGGATCAATCACCGTTTGGCCTGAGGTACCGGGCGGC
AAAGGCGGAAATATGGTTATGGACTAAATGATCCTTGTTCTCGACGACAC
ATCTTGCCACCAGGGATATTACGCGGAGGTGGGGGTGACTGAAAGTAATA
AAGAGACGCAAAAAACAGCGCTGTTACGCAAGTACAAGGCCGGATCAATC
ACCGTTTGGCCTGAGGTACCGGGCGGCAAAGGCGGAAATATGGTTATGGA
CTAA
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