mRNA_H-paniculata_contig5276.12656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5276.12656.1
Unique NamemRNA_H-paniculata_contig5276.12656.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5276.12656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5276contigH-paniculata_contig5276:9906..10561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size635
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5276.12656.1prot_H-paniculata_contig5276.12656.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5276 9998..10432 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.8792663-UTR-H-paniculata_contig5276:9905..99971622930529.8792663-UTR-H-paniculata_contig5276:9905..9997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5276 9906..9997 -
1691481333.948597-UTR-H-paniculata_contig5276:9905..99971691481333.948597-UTR-H-paniculata_contig5276:9905..9997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5276 9906..9997 -
1622930529.9301937-UTR-H-paniculata_contig5276:10432..105611622930529.9301937-UTR-H-paniculata_contig5276:10432..10561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5276 10433..10561 -
1691481333.97252-UTR-H-paniculata_contig5276:10432..105611691481333.97252-UTR-H-paniculata_contig5276:10432..10561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5276 10433..10561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.8946784-CDS-H-paniculata_contig5276:9997..102911622930529.8946784-CDS-H-paniculata_contig5276:9997..10291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5276 9998..10291 -
1691481333.9571629-CDS-H-paniculata_contig5276:9997..102911691481333.9571629-CDS-H-paniculata_contig5276:9997..10291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5276 9998..10291 -
1622930529.90886-CDS-H-paniculata_contig5276:10312..104321622930529.90886-CDS-H-paniculata_contig5276:10312..10432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5276 10313..10432 -
1691481333.964773-CDS-H-paniculata_contig5276:10312..104321691481333.964773-CDS-H-paniculata_contig5276:10312..10432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5276 10313..10432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5276.12656.1

>prot_H-paniculata_contig5276.12656.1 ID=prot_H-paniculata_contig5276.12656.1|Name=mRNA_H-paniculata_contig5276.12656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MTRPVRSFTRHLFVSIHRCCNLFRWRKHTSTPPNKTRNNRILLSGRCMHV
FSSVFKCAQCIIVHPIVDCLERKVSYNVGPRARSRASSSFRSSFPRACLL
PFILCSHAHARPRIPTETKHGRKREPKHSTNHGVWAS*
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mRNA from alignment at H-paniculata_contig5276:9906..10561-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5276.12656.1 ID=mRNA_H-paniculata_contig5276.12656.1|Name=mRNA_H-paniculata_contig5276.12656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=656bp|location=Sequence derived from alignment at H-paniculata_contig5276:9906..10561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCGATATGGGCTCGTGGGCATGGGCCCACTACATCATGGAGTGGGGG
ACCAAGGGTGTCTTCGCGGTGAGGGCTATTCACTACTGATACCACGGACA
AGTATTGTTACCTACTTTTAATCGCTCCGATGACTAGGCCGGTTCGAAGC
TTTACACGACACTTGTTCGTTAGTATCCACCGTTGCTGCAATCTATTCCG
ATGGAGAAAACATACAAGCACGCCTCCCAACAAGACGAGAAATAATCGTG
CGAATATGTTAATGTGGTAGATTCTACTGTCTGGTCGTTGCATGCACGTT
TTTTCTTCCGTCTTCAAATGCGCACAATGTATTATCGTACACCCAATCGT
GGATTGTCTCGAGAGGAAGGTAAGCTACAACGTTGGACCAAGAGCTCGTA
GTCGCGCCTCGTCTAGTTTTAGGTCGTCCTTTCCGCGGGCATGCCTCCTT
CCTTTTATCCTATGTTCACACGCACATGCACGGCCGAGAATCCCAACAGA
AACAAAGCATGGCCGAAAACGAGAACCGAAACACTCGACGAATCATGGTG
TGTGGGCGAGCTGAACGGTAGTATTCGACTTCTGAACGTACGTACAGCGC
ATATCAATACTATCGAACCTCGCGTGGCTTGCACGGATCGTCTGCTGCTA
CCATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig5276:9906..10561-

>mRNA_H-paniculata_contig5276.12656.1 ID=mRNA_H-paniculata_contig5276.12656.1|Name=mRNA_H-paniculata_contig5276.12656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig5276:9906..10561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAGGCCGGTTCGAAGCTTTACACGACACTTGTTCGTTAGTATCCA
CCGTTGCTGCAATCTATTCCGATGGAGAAAACATACAAGCACGCCTCCCA
ACAAGACGAGAAATAATCGTATGACTAGGCCGGTTCGAAGCTTTACACGA
CACTTGTTCGTTAGTATCCACCGTTGCTGCAATCTATTCCGATGGAGAAA
ACATACAAGCACGCCTCCCAACAAGACGAGAAATAATCGTATTCTACTGT
CTGGTCGTTGCATGCACGTTTTTTCTTCCGTCTTCAAATGCGCACAATGT
ATTATCGTACACCCAATCGTGGATTGTCTCGAGAGGAAGGTAAGCTACAA
CGTTGGACCAAGAGCTCGTAGTCGCGCCTCGTCTAGTTTTAGGTCGTCCT
TTCCGCGGGCATGCCTCCTTCCTTTTATCCTATGTTCACACGCACATGCA
CGGCCGAGAATCCCAACAGAAACAAAGCATGGCCGAAAACGAGAACCGAA
ACACTCGACGAATCATGGTGTGTGGGCGAGCTGAATTCTACTGTCTGGTC
GTTGCATGCACGTTTTTTCTTCCGTCTTCAAATGCGCACAATGTATTATC
GTACACCCAATCGTGGATTGTCTCGAGAGGAAGGTAAGCTACAACGTTGG
ACCAAGAGCTCGTAGTCGCGCCTCGTCTAGTTTTAGGTCGTCCTTTCCGC
GGGCATGCCTCCTTCCTTTTATCCTATGTTCACACGCACATGCACGGCCG
AGAATCCCAACAGAAACAAAGCATGGCCGAAAACGAGAACCGAAACACTC
GACGAATCATGGTGTGTGGGCGAGCTGA
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