mRNA_H-paniculata_contig52758.12655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52758.12655.1
Unique NamemRNA_H-paniculata_contig52758.12655.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: D7FHM8_ECTSI (Putative ubiquitin activating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM8_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.960e-25
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEEVR 264
            +TLADLVERV K+RLG   PTV +  +T+ YEEG+ AD+RL VNL K L DLPGGG+K+ T+VEV+D  Q+L V L++FHKTFDEEE R
Sbjct:  177 LTLADLVERVLKQRLGVNEPTVGLGATTL-YEEGDGADDRLVVNLTKLLKDLPGGGIKDDTAVEVEDFSQDLTVKLNIFHKTFDEEEER 264
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: A0A6H5JLI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI2_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.080e-22
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEEV 261
            +TLA+LV+RV K+RLG   PTV +  +T+ YEEG+ AD+RL VNL K L DLPGGG+K+ T+VEV+D  Q+L V L++FHKTF+EEEV
Sbjct:  477 LTLANLVDRVLKQRLGVNEPTVGLGATTL-YEEGDGADDRLVVNLTKLLKDLPGGGIKDDTTVEVEDFSQDLTVKLNIFHKTFNEEEV 563
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: A0A835ZFD7_9STRA (SUMO-activating enzyme subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFD7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.580e-19
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEEV 261
            +T  + V RV K RLG   P+V++  S+++YEEGEDA + L  NL KRL DLPGGGV +GTS+ V+D  Q+L VT+ V+H+ FDEEEV
Sbjct:  450 LTFGEFVSRVLKSRLGVNEPSVSVG-SSLIYEEGEDAAQGLRANLPKRLRDLPGGGVTDGTSLSVEDFSQDLDVTVCVYHRVFDEEEV 536
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: K8Z002_NANGC (UAE_UbL domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z002_NANGC)

HSP 1 Score: 80.1 bits (196), Expect = 1.590e-15
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:    4 TLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAV-NLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEEVRLAPQYNVFRYSIIGGS 312
            TL+ LVE+V K  L F  PT+T++ + I+YEEGEDADE +A  NL   L  LP GG+++ ++VEVDD+ Q+L + L V+HK ++       P    F   ++GGS
Sbjct:   47 TLSFLVEKVLKGSLSFAQPTITLRGTNIIYEEGEDADETMARRNLPLALASLPAGGIRDQSTVEVDDVSQDLTLQLHVYHKRWEGGPEGAGPPPEGF---LLGGS 148
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: M4B998_HYAAE (SUMO-activating enzyme subunit n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B998_HYAAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.520e-15
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHK 240
            M L DLV++V K++LG   PT++I  +TI YEEGEDA+ RLAVNLGK+L DLPG G+ + T+V V+D  Q+    + V H+
Sbjct:  455 MLLCDLVDQVLKKKLGMNEPTISIGANTI-YEEGEDAETRLAVNLGKKLMDLPGKGIHHETTVSVEDFSQDFRCNIRVLHR 534
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: G4YWP8_PHYSP (SUMO-activating enzyme subunit n=6 Tax=Phytophthora TaxID=4783 RepID=G4YWP8_PHYSP)

HSP 1 Score: 81.3 bits (199), Expect = 8.860e-15
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFH---KTFDEEEVRL 267
            M L DLVE+V K++LG   PT++I  +TI YEEGEDA+E LAVNL K+L DLPG G+ + T+V V+D  Q+    + V H   K F EE   L
Sbjct:  457 MLLRDLVEQVLKKKLGVNEPTISIGANTI-YEEGEDAEESLAVNLEKKLADLPGKGIHHETTVSVEDFSQDFRCNIRVLHRDAKEFGEEATEL 548
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: W2RC93_PHYPN (SUMO-activating enzyme subunit n=11 Tax=Phytophthora TaxID=4783 RepID=W2RC93_PHYPN)

HSP 1 Score: 79.3 bits (194), Expect = 4.130e-14
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEE 258
            M L  LVE V K++LG   PT++I  +TI YEEGEDA+  LAVNL K+L DLPG G+++ T+V ++D  Q+    + VFH+  DEEE
Sbjct:  457 MLLRGLVELVLKKKLGVNEPTISIGPNTI-YEEGEDAETSLAVNLEKKLVDLPGKGIRHDTTVSIEDFSQDFRCNIRVFHR--DEEE 540
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: A0A2P4YST3_9STRA (SUMO-activating enzyme subunit n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YST3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.610e-14
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFH---KTFDEEEVRL 267
            M L DLV++V K++LG   PT++I  +TI YEEGEDA+  LAVNL K+L DLPG G+++ T+V ++D  Q+    + V H   K F EE   L
Sbjct:  451 MLLRDLVDQVLKKKLGVNEPTISIGANTI-YEEGEDAETSLAVNLEKKLVDLPGKGIRHDTTVSIEDFSQDFRCNIRVLHRDEKEFGEEATEL 542
[Close]
BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: A0A2D4BPS5_PYTIN (SUMO-activating enzyme subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPS5_PYTIN)

HSP 1 Score: 79.0 bits (193), Expect = 5.620e-14
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    7 LADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHK 240
            L +LVE+V K+RLG   PTV+I  +TI YEEGEDA+E LAVNL KRL DLPG G+ + T + V+D  Q+   ++ V H+
Sbjct:  460 LRELVEKVLKKRLGVNEPTVSIGANTI-YEEGEDAEESLAVNLDKRLVDLPGKGIHHDTIISVEDFSQDFQCSIRVLHR 537
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BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Match: A0A329SZP2_9STRA (SUMO-activating enzyme subunit n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZP2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.620e-14
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRL-DLPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEE 258
            M L DLVE+V K++LG   PT++I  +TI YEEGEDA+  LAVNL K+L DLPG G+ + T+V ++D  Q+    + V H+  DEEE
Sbjct:  457 MFLRDLVEKVLKKKLGVNEPTISIGANTI-YEEGEDAEMSLAVNLEKKLVDLPGKGIHHETTVSIEDFSQDFRCNIRVLHR--DEEE 540
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52758.12655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHM8_ECTSI2.960e-2562.92Putative ubiquitin activating enzyme n=1 Tax=Ectoc... [more]
A0A6H5JLI2_9PHAE2.080e-2260.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFD7_9STRA4.580e-1954.55SUMO-activating enzyme subunit n=1 Tax=Tribonema m... [more]
K8Z002_NANGC1.590e-1543.81UAE_UbL domain-containing protein (Fragment) n=1 T... [more]
M4B998_HYAAE6.520e-1551.85SUMO-activating enzyme subunit n=1 Tax=Hyaloperono... [more]
G4YWP8_PHYSP8.860e-1550.54SUMO-activating enzyme subunit n=6 Tax=Phytophthor... [more]
W2RC93_PHYPN4.130e-1450.57SUMO-activating enzyme subunit n=11 Tax=Phytophtho... [more]
A0A2P4YST3_9STRA5.610e-1447.31SUMO-activating enzyme subunit n=1 Tax=Phytophthor... [more]
A0A2D4BPS5_PYTIN5.620e-1453.16SUMO-activating enzyme subunit n=1 Tax=Pythium ins... [more]
A0A329SZP2_9STRA5.620e-1450.57SUMO-activating enzyme subunit n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52758contigH-paniculata_contig52758:414..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D7FHM8
Preferred nameUBA2
KEGG koko:K10685
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000287,GO:0002119,GO:0002164,GO:0002376,GO:0002682,GO:0002684,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006464,GO:0006807,GO:0006955,GO:0006959,GO:0007275,GO:0007389,GO:0008047,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008641,GO:0009506,GO:0009790,GO:0009791,GO:0009792,GO:0009793,GO:0009889,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0010154,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017076,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019899,GO:0019948,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030234,GO:0030554,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031510,GO:0031974,GO:0031981,GO:0032182,GO:0032183,GO:0032446,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033134,GO:0034121,GO:0034123,GO:0034124,GO:0034126,GO:0035639,GO:0036094,GO:0036211,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044388,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046872,GO:0046982,GO:0046983,GO:0048316,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0055044,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097367,GO:0098772,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.SUMO activating enzyme activity
EggNOG OGsCOG0476@1,KOG2013@2759
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size514
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52758.12655.1prot_H-paniculata_contig52758.12655.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52758 414..1109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.7789996-CDS-H-paniculata_contig52758:413..5601622930529.7789996-CDS-H-paniculata_contig52758:413..560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52758 414..560 +
1691481333.9221594-CDS-H-paniculata_contig52758:413..5601691481333.9221594-CDS-H-paniculata_contig52758:413..560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52758 414..560 +
1622930529.7951703-CDS-H-paniculata_contig52758:845..11091622930529.7951703-CDS-H-paniculata_contig52758:845..1109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52758 846..1109 +
1691481333.9327538-CDS-H-paniculata_contig52758:845..11091691481333.9327538-CDS-H-paniculata_contig52758:845..1109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52758 846..1109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.813165-UTR-H-paniculata_contig52758:1109..12121622930529.813165-UTR-H-paniculata_contig52758:1109..1212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52758 1110..1212 +
1691481333.9405036-UTR-H-paniculata_contig52758:1109..12121691481333.9405036-UTR-H-paniculata_contig52758:1109..1212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52758 1110..1212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52758.12655.1

>prot_H-paniculata_contig52758.12655.1 ID=prot_H-paniculata_contig52758.12655.1|Name=mRNA_H-paniculata_contig52758.12655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MTLADLVERVFKRRLGFTNPTVTIQQSTIVYEEGEDADERLAVNLGKRLD
LPGGGVKNGTSVEVDDLDQNLVVTLSVFHKTFDEEEVRLAPQYNVFRYSI
IGGSFFFPVCFFVCLFPAFPHSVKKFFFIVLWRARS*
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mRNA from alignment at H-paniculata_contig52758:414..1212+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52758.12655.1 ID=mRNA_H-paniculata_contig52758.12655.1|Name=mRNA_H-paniculata_contig52758.12655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=799bp|location=Sequence derived from alignment at H-paniculata_contig52758:414..1212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTGGCAGATTTGGTGGAGAGAGTATTCAAGCGAAGGCTAGGATT
TACCAACCCCACGGTGACCATCCAGCAGTCTACCATCGTTTACGAGGAGG
GCGAAGATGCGGATGAACGCCTCGCAGTCAACCTGGGCAAACGCCTCGCA
GTCAACCTGGGCAAACGCCTCAAGGTCGGATCAGTACTGAAACAGCAAAG
TACAGTATCAAAACATCAATCGTACATAAGAGTGGCAGCAGAACAATAAT
GTCATATCACATGCTATTTTACTGGGTTGTGACAAAAAGATTTCCAACTC
CATCGCCGTTCTATGGTCATCCTCTACGGCATGGTATCGTCGATTGGCCG
TTATTCGTCGTTTTCCACGATACTTGTGTGGATATGATTATTCTACTGTA
TTGCGTGTGTGTTTGCTACGGTTTTGGTGCAGGACCTGCCCGGCGGAGGG
GTCAAGAACGGCACGTCCGTAGAGGTAGACGACTTGGACCAAAACCTGGT
AGTTACCCTTAGCGTGTTCCACAAGACGTTCGACGAGGAGGAGGTACGTC
TGGCACCGCAATACAACGTTTTTCGATATTCGATAATCGGTGGCTCGTTC
TTTTTCCCTGTTTGTTTTTTTGTTTGTCTTTTTCCAGCTTTTCCCCACTC
TGTGAAAAAGTTTTTTTTCATCGTTTTGTGGAGAGCACGTTCCTGACGTC
CCTGGGGTTCACGAACCCCGATCCCCTACACAACAACCAATGGCTTTTTG
TCCCTTTCTCGGAACAGCTTTCTAGCTGTGTCCGACCCCCCGATGGTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig52758:414..1212+

>mRNA_H-paniculata_contig52758.12655.1 ID=mRNA_H-paniculata_contig52758.12655.1|Name=mRNA_H-paniculata_contig52758.12655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig52758:414..1212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCTGGCAGATTTGGTGGAGAGAGTATTCAAGCGAAGGCTAGGATT
TACCAACCCCACGGTGACCATCCAGCAGTCTACCATCGTTTACGAGGAGG
GCGAAGATGCGGATGAACGCCTCGCAGTCAACCTGGGCAAACGCCTCATG
ACGCTGGCAGATTTGGTGGAGAGAGTATTCAAGCGAAGGCTAGGATTTAC
CAACCCCACGGTGACCATCCAGCAGTCTACCATCGTTTACGAGGAGGGCG
AAGATGCGGATGAACGCCTCGCAGTCAACCTGGGCAAACGCCTCGACCTG
CCCGGCGGAGGGGTCAAGAACGGCACGTCCGTAGAGGTAGACGACTTGGA
CCAAAACCTGGTAGTTACCCTTAGCGTGTTCCACAAGACGTTCGACGAGG
AGGAGGTACGTCTGGCACCGCAATACAACGTTTTTCGATATTCGATAATC
GGTGGCTCGTTCTTTTTCCCTGTTTGTTTTTTTGTTTGTCTTTTTCCAGC
TTTTCCCCACTCTGTGAAAAAGTTTTTTTTCATCGTTTTGTGGAGAGCAC
GTTCCTGAGACCTGCCCGGCGGAGGGGTCAAGAACGGCACGTCCGTAGAG
GTAGACGACTTGGACCAAAACCTGGTAGTTACCCTTAGCGTGTTCCACAA
GACGTTCGACGAGGAGGAGGTACGTCTGGCACCGCAATACAACGTTTTTC
GATATTCGATAATCGGTGGCTCGTTCTTTTTCCCTGTTTGTTTTTTTGTT
TGTCTTTTTCCAGCTTTTCCCCACTCTGTGAAAAAGTTTTTTTTCATCGT
TTTGTGGAGAGCACGTTCCTGA
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