mRNA_H-paniculata_contig5274.12653.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 127 bits (320), Expect = 7.600e-29 Identity = 77/192 (40.10%), Postives = 108/192 (56.25%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASRD-----------ESIVAFQKWHPEGKRLLQARNRSFGMEEVNPAKSPASGKELQRTTEDTRLDERGTKQYQAIVGSHIFLTQCTRFDICYSVSQAARIMSKPSQE 543
W +AM+KE++ L++H VADL+P SV +SIIGT WV++ K DG FKAR+V+QGWAQQHG+ C +TF PVCR+ SQRLLLAI A R +SI + + P L+ ++ F + P S AS TK Y+++ GS +FL D+ Y S+ RI+++ S E
Sbjct: 606 WEKAMRKELDSLNDHAVADLIPFSSVLAGYSIIGTRWVYRVKTDGRFKARVVVQGWAQQHGVDCLTTFVPVCRIGSQRLLLAIAARRMSSPREGHLANIKSIFRYLRKRPN-LSLVYRKDSRFEL----PCYSDAS--------------YASTKDYKSVTGSMVFLAG----DLIYFSSRVQRIVAQSSSE 774
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 122 bits (305), Expect = 7.610e-27 Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASRDESIVA 279
W +AM KE+ LD+H VADL+P SV S+IGT WV++ K DG FKAR+V+QGWAQQHGI C +TFAPVC++ SQRLLLAI A++ ++A
Sbjct: 659 WEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIA 751
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.080e-26 Identity = 96/332 (28.92%), Postives = 130/332 (39.16%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASRD------ESIVAFQKWHPEGKRLL-QARN---------------------------RSFG----------------------------------------------------------------------------------------------------MEEVNPAKSPASGKELQRTTEDT-RLDERGTKQYQAIVGSHIFLTQCTRFDICYSVSQAARIMSKPSQEHMVAAKCILRYLRGKP 591
W AM KE+ L +H VADLVP S+ P IG+ W++K KA G KARL++QGW Q+HGI CG T+APV R SQ +L+AI A R + + AF + + E + + QA+ R+FG M + PA +P SG E+++ E+ L E K YQ IVGS +FLT TR++I Y+V R M+KP+ +HMV AK +LRYLRG P
Sbjct: 905 WKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCP 1236
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE) HSP 1 Score: 103 bits (256), Expect = 2.430e-23 Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASR 261
W AM KE+ L +H VADLVP S+ P IG+ W++K KA G KARL++QGW Q+HGI CG T+APV R SQ +L+AI A R
Sbjct: 6 WKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAER 92
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.150e-19 Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASR 261
W AM KEI L +H VADLVP + P IG+ W++K KA G KARL++QGW Q+HGI CG T+ PV R SQ + +AI A R
Sbjct: 341 WKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAER 427
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A438CNC7_VITVI (Copia protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CNC7_VITVI) HSP 1 Score: 97.8 bits (242), Expect = 1.070e-18 Identity = 74/228 (32.46%), Postives = 113/228 (49.56%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLV--PAHSVSPSHSIIGTHWVFKAK--ADG*F---KARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASRDESIVAFQKWHPEGKRLLQARNRS--------------------------FGMEEVNPAKSPASGKELQRTTEDTRLDERGTKQYQAIVGSHIFLTQCTRFDICYSVSQAARIMSKPSQEHMVAAKCILRYLRG 585
W AM++E+N +D++ +LV P+H S IG WV++ K +DG KARLV++G+AQ G+ TFAPV RL++ ++LLA+ A R KW P G+ + RS F MEE P +P + KE + + G Y++++G ++LT TR DI + VS +R M S+ H AAK ++RY++G
Sbjct: 338 WRVAMQEELNMIDKNNTWELVYRPSHKKS-----IGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFLETFAPVARLDTIKMLLALAAQR--------KWLPGGRDFCRTTRRSNAGFVNKFKAEMEQVFEMTDLEILKKFKMEECKPTSTPMNQKEKFCKEDGAEKVDEGL--YRSMIGCLMYLT-ATRPDIMHVVSLLSRYMHCASEIHFQAAKRVIRYVKG 549
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A699M2X6_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699M2X6_TANCI) HSP 1 Score: 93.6 bits (231), Expect = 9.350e-18 Identity = 66/213 (30.99%), Postives = 104/213 (48.83%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*-----FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASRDESIVAFQKWHPEGKRLLQARNRSFGMEEV------------NPAKSPAS-GKELQRTTEDTRLDERGTKQYQAIVGSHIFLTQCTRFDICYSVSQAARIMSKPSQEHMVAAKCILRYLRG 585
W EAM+ E++ ++++ L ++ P+H IG WV+K K D +KARLV +G+ Q+ GI FAPV R+E+ RL+LA+ A+ W + A + EEV N K P G +L + + +D T Y++++GS +L TR D+ YSV +R M P H+ A K ++RY++G
Sbjct: 108 WIEAMEIELDLINKNNTWTLT---TLPPNHKAIGLKWVYKTKRDANGKIIQYKARLVAKGYVQEQGIDFDEVFAPVARIETVRLILAL--------AAYHGWQVYHLDVKSAFLHGYLKEEVYVTQPEGFVQPGNTGKIPMDPGTKLVKAKDGNSID---TTYYRSLIGSLKYLLH-TRPDLSYSVRLLSRFMQDPKDHHLKAVKQVIRYIKG 305
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A5AWN8_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AWN8_VITVI) HSP 1 Score: 95.1 bits (235), Expect = 9.640e-18 Identity = 74/235 (31.49%), Postives = 113/235 (48.09%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLV--PAHSVSPSHSIIGTHWVFKAK--ADG*F---KARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAIGASRDESIVAFQKWHPEGKRLLQARNRS---------------------------------FGMEEVNPAKSPASGKELQRTTEDTRLDERGTKQYQAIVGSHIFLTQCTRFDICYSVSQAARIMSKPSQEHMVAAKCILRYLRG 585
W AM++E+N +D++ +LV P+H S IG WV++ K +DG KARLV++G+AQ G+ TFAPV RL++ ++LLA+ A R KW P G+ + RS F MEE P +P + KE + + G Y++++G ++LT TR DI + VS +R M S+ H AAK ++RY++G
Sbjct: 626 WRVAMQEELNMIDKNNTWELVYRPSHKKS-----IGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFLETFAPVARLDTIKMLLALAAQR--------KWLPGGRDFCRTTRRSNAGFVNKFKAEMEQKQNEIFICQQKYAKEILKKFKMEECKPTSTPMNQKEKFCKEDGAEKVDEGL--YRSMIGCLMYLT-ATRPDIMHVVSLLSRYMHCASEIHFQAAKRVIRYVKG 844
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.440e-17 Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAI 249
W+ A ++EI L E QV LVP +V P I + WVFK KADG FK RLV QGW Q G+ CGST+APVCRL+S R+L I
Sbjct: 65 WNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACI 147
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.820e-17 Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 WHEAMKKEINRLDEHQVADLVPAHSVSPSHSIIGTHWVFKAKADG*FKARLVLQGWAQQHGIGCGSTFAPVCRLESQRLLLAI 249
W+ A ++EI L E QV LVP +V P + WVFK KADG FK RLV QGW Q G+GCGST+APVCRL+S R+L I
Sbjct: 650 WNTAAEREIASLKERQVYKLVPPTAVPPGRKRTTSKWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACI 732 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5274.12653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5274.12653.1 >prot_H-paniculata_contig5274.12653.1 ID=prot_H-paniculata_contig5274.12653.1|Name=mRNA_H-paniculata_contig5274.12653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MKSTTGSMFFLAKGLVYFSSSLQRITATSSTEVEFIALATCTKQGTHLSNback to top mRNA from alignment at H-paniculata_contig5274:12522..13714- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5274.12653.1 ID=mRNA_H-paniculata_contig5274.12653.1|Name=mRNA_H-paniculata_contig5274.12653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-paniculata_contig5274:12522..13714- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5274:12522..13714- >mRNA_H-paniculata_contig5274.12653.1 ID=mRNA_H-paniculata_contig5274.12653.1|Name=mRNA_H-paniculata_contig5274.12653.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig5274:12522..13714- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |