mRNA_H-paniculata_contig5272.12652.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5272.12652.1
Unique NamemRNA_H-paniculata_contig5272.12652.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5272.12652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5272contigH-paniculata_contig5272:3747..4144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size237
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5272.12652.1prot_H-paniculata_contig5272.12652.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5272 3875..4144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.5156982-UTR-H-paniculata_contig5272:3746..38741622930529.5156982-UTR-H-paniculata_contig5272:3746..3874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5272 3747..3874 -
1691481333.8224602-UTR-H-paniculata_contig5272:3746..38741691481333.8224602-UTR-H-paniculata_contig5272:3746..3874Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5272 3747..3874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930529.5364356-CDS-H-paniculata_contig5272:3874..38821622930529.5364356-CDS-H-paniculata_contig5272:3874..3882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5272 3875..3882 -
1691481333.8406763-CDS-H-paniculata_contig5272:3874..38821691481333.8406763-CDS-H-paniculata_contig5272:3874..3882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5272 3875..3882 -
1622930529.5555055-CDS-H-paniculata_contig5272:3915..41441622930529.5555055-CDS-H-paniculata_contig5272:3915..4144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5272 3916..4144 -
1691481333.8587534-CDS-H-paniculata_contig5272:3915..41441691481333.8587534-CDS-H-paniculata_contig5272:3915..4144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5272 3916..4144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5272.12652.1

>prot_H-paniculata_contig5272.12652.1 ID=prot_H-paniculata_contig5272.12652.1|Name=mRNA_H-paniculata_contig5272.12652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
ACICSSGSGRHLFCISLVTHPAAYTVDSACFDVTEVCVRHTCYCCSDRSD
IMFGCSADILCRCIVPLCAREDVDNHSP*
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mRNA from alignment at H-paniculata_contig5272:3747..4144-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5272.12652.1 ID=mRNA_H-paniculata_contig5272.12652.1|Name=mRNA_H-paniculata_contig5272.12652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=398bp|location=Sequence derived from alignment at H-paniculata_contig5272:3747..4144- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGTATCTGTTCTTCAGGCAGCGGAAGACACCTGTTTTGCATTAGCCT
CGTCACACACCCAGCTGCGTACACGGTAGACAGTGCGTGCTTTGATGTCA
CGGAAGTGTGCGTGAGACATACATGTTACTGTTGTAGCGACCGTAGCGAT
ATCATGTTTGGTTGCAGTGCTGACATATTATGTAGGTGCATCGTTCCACT
ATGTGCTCGCGAGGATGTGGACAATCACTGTTTGAGTATCTCATTGTACA
ATTACATTTCAGCGCCTTGACATACGTATTGACATTGCAGTGTTTTCAGC
TCGGCAGCAGTCAGTCTGCAGTACTAGCTAGTACTGACATCGGACAACAG
ATACAGCAGTGGGACACTTATTAGGACTATTTTCTGCTTTTTCTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5272:3747..4144-

>mRNA_H-paniculata_contig5272.12652.1 ID=mRNA_H-paniculata_contig5272.12652.1|Name=mRNA_H-paniculata_contig5272.12652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig5272:3747..4144- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTGTATCTGTTCTTCAGGCAGCGGAAGACACCTGTTTTGCATTAGCCT
CGTCACACACCCAGCTGCGTACACGGTAGACAGTGCGTGCTTTGATGTCA
CGGAAGTGTGCGTGAGACATACATGTTACTGTTGTAGCGACCGTAGCGAT
ATCATGTTTGGTTGCAGTGCTGACATATTATGTAGGTGCATCGTTCCACT
ATGTGCTCGCGAGGATGTGGACAATCACTGCGTGTATCTGTTCTTCAGGC
AGCGGAAGACACCTGTTTTGCATTAGCCTCGTCACACACCCAGCTGCGTA
CACGGTAGACAGTGCGTGCTTTGATGTCACGGAAGTGTGCGTGAGACATA
CATGTTACTGTTGTAGCGACCGTAGCGATATCATGTTTGGTTGCAGTGCT
GACATATTATGTAGGTGCATCGTTCCACTATGTGCTCGCGAGGATGTGGA
CAATCACTCGCCTTGACGCCTTGA
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