mRNA_H-paniculata_contig5270.12648.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 377 bits (968), Expect = 3.250e-113 Identity = 254/536 (47.39%), Postives = 311/536 (58.02%), Query Frame = 1
Query: 1141 MTRFLALLACTAPAIFAAPISLRG--VPQDGTQRSLMNEEGE-YQHLGCFSDNVGDRILGHM-YKNEEMTPDICNNYCKDFNAAYMSLQFGHECWCTRIGDEDYERHGVGVCDQYCAGDNSVTCGGNMAFDLYKLQWASQPVDSEYMGCYRDMTDRRLMTDMIWDESMTPSLCRQHCEGTGAMYYGTQFGSECWCGSSSSRSDYERFGMGVCHMACSGDSSAACGGHSAFSLFKFSDGSKPFTEPKPRTXXXXXXXXXXKPVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPKPAPGGGGGGKLPPMYQEKFSGEGTYYGVTTAGNCAFKGDYQK-YSGLVPVALNAPQYDGSKMCGACVKGKGTGGGSGNTPVGEFVGFISDQCPECSYGDLDFASSGDGRWDIEWEFIPCPGGGDPYFVFEGSNPFYWKISARGTTVPVEYLTVAGNEGRRTDDNFYVVE--DGVPFNGQQSVWCKTLDGQEFEKDVSL 2727
MTR A L A + + SLRG V G +R L E Y+H+GC+ DN H+ E MT ++C + C + + +M Q G+EC C+R D Y GVCD CAGD+ TCGG + DLYKL A P EY+GC+ D + R+M DM+ DE MT +CR HCE + A+YY TQ+G+EC+CG SS DYE G+G CHM C GDS +ACGG+ AFSL++F P + TXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + GGGGG Y F+GEGTYY T+AGNC F D+ Y G+ PVALN PQY S MCGACV+G+GTGGGSG+ PVG F GFI D+CPECS GDLDF + DGRWDI+W+F+ CP G + F E +YWKI RGT PVE LT+ G RTDDN + +E G P+ Q V T+ G E ++S+
Sbjct: 1 MTRLAAALLVCATPVASLETSLRGAEVSAGGARRGLSGSSYEAYEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEPDVPESTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV------------------------------------------SSGGGGGDVSGGEYGITFNGEGTYYTGTSAGNCGFFDDFPSIYDGMTPVALNEPQYGDSLMCGACVEGEGTGGGSGSDPVGTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEMSV 494
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 241 bits (615), Expect = 1.320e-60 Identity = 109/206 (52.91%), Postives = 140/206 (67.96%), Query Frame = 1
Query: 1255 GEYQHLGCFSDNVGDRILGHM-YKNEEMTPDICNNYCKDFNAAYMSLQFGHECWCTRIGDEDYERHG-VGVCDQYCAGDNSVTCGGNMAFDLYKLQWASQPVDSEYMGCYRDMTDRRLMTDMIWDESMTPSLCRQHCEGTGAMYYGTQFGSECWCGSSSSRSDYERFGMGVCHMACSGDSSAACGGHSAFSLFKFSDGSK-PFTEP 1863
G Y+H+GCF D+ DR+L + +MT ++C C AAYM+ Q+G ECWC+R G DY+RHG GVCD C GD S TCGG +F+LY+L WA P D EY+GCY D R+++DMI + MT ++CR+HC A YYGTQF SECWCG+S +DYER G GVCHMACSGD + ACGG+ A+SLFK+ +G + P T P
Sbjct: 1143 GAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAP 1348
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI) HSP 1 Score: 214 bits (545), Expect = 1.530e-59 Identity = 99/189 (52.38%), Postives = 131/189 (69.31%), Query Frame = 1
Query: 2173 LPPMYQEKFSGEGTYYGVTTAG--NCAFKGDY-QKYSGLVPVALNAPQYDGSKMCGACVKGKGTGGGSGNTPV-GEFVGFISDQCPECSYGDLDFASSGDGRWDIEWEFIPCPGGGDPYFVFEGSNPFYWKISARGTTVPVEYLTVAGNEGRRTDDNFYVVEDGVPFNGQQSVWCKTLDGQEFEKDVSL 2727
+PP Y E+FSG+ TYYGVT G NCA + + Y G++PVALN QY S MCGAC++G+G G G G PV G F +++D+CPEC +GDLDFA+ GDGRWDI W F+PC GG D F+FEGSN FYWKI RG PVE L + G+E R++DNF+++E G PF+G+Q V KT+ + + V++
Sbjct: 33 IPPPYDEQFSGDATYYGVTPDGDGNCAIRSPLPEMYDGMIPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGG-PFDGEQEVHTKTVLNKRRRQSVAM 220
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.430e-55 Identity = 105/200 (52.50%), Postives = 129/200 (64.50%), Query Frame = 1
Query: 2137 PKPAPGGGGGGKLPPMYQEKFSGEGTYYGVTTAGNCAFKGDY-QKYSGLVPVALNAPQYDGSKMCGACVKGKGTGGGSGNTPV-GEFVGFISDQCPECSYGDLDFASSGDGRWDIEWEFIPCPGGGDPYFVFEGSNPFYWKISARGTTVPVEYLTVAGNEGRRTDDN-FYVVEDGVPFNGQQSVWCKTLDGQEFEKDVSL 2727
P P P GG Y E++SGEGTYYG TTAG C+F D + Y G++PVALNA QY S MCGACV+G +G GSGN P+ F FI+D+CPEC GDLDF+ SGDGRWDIEW+F+ CPG + FV +NP+YWK+ RGTT PV LTV G RT DN F V DG ++G Q+V T+ G +VS+
Sbjct: 93 PSPTPSYSGG-----QYGEEYSGEGTYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGE-ETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.740e-54 Identity = 109/235 (46.38%), Postives = 138/235 (58.72%), Query Frame = 1
Query: 1210 GVPQDGTQRSLMNEEGEYQHLG----CFSDN------VGDRILGHMYK-----------NEEMTPDICNNYCKDFNAAYMSLQFGHECWCTRIGDEDYERHG-VGVCDQYCAGDNSVTCGGNMAFDLYKLQWASQPVDSEYMGCYRDMTDRRLMTDMIWDESMTPSLCRQHCEGTGAMYYGTQFGSECWCGSSSSRSDYERFGMGVCHMACSGDSSAACGGHSAFSLFKFSDGSK 1848
G+ QD + + E GE + C D G L H+ K + +MT ++C C AAYM+ Q+G ECWC+R G DY+RHG GVCD C GD S TCGG +F+LY+L WA P D EY+GCY D R++ DMI ++MT +CR+HC A YYGTQF SECWCG+S +DYER G GVCHMACSGD + ACGG+ A+SLFK +G K
Sbjct: 762 GLGQDNCCQGRIEEYGELCSVTLAAPCIVDGEGCLYFAGLACLPHLAKQPLHHVRSGLISSDMTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCIGDESETCGGVHSFNLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFKHDNGGK 996
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 203 bits (517), Expect = 3.600e-52 Identity = 140/423 (33.10%), Postives = 178/423 (42.08%), Query Frame = 1
Query: 1561 EYMGCYRD--MTDRRLMTDMIWDESMTPSLCRQHCEGTGAMYYGTQFGSECWCGSSSSRSDYERFGMGVCHMACSGDSSAACGGHSAFSLFKFSDGSKPFTEP--------------------KPRTXXXXXXXXXXKPVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPKP-----APGGGGGGKLPPM----YQEKFSGEGTYYGVTTAGNCAFKGDYQK-YSGLVPVALNAPQYDGSKMCGACVKGKGTGGGSGNTPVGEFVGFISDQCPECSYGDLDFASSGDGRWDIEWEFIPCPGGGDPYFVFEGSNPFYWKISARGTTVPVEYLTVAGNEGRRTDDNFYVVE--DGVPFNGQQSVWCKTLDGQEFEKDVSL 2727
E++GCY D M + ++ D +MT LC C GA + GTQ G+EC C S DY F GVC C+GDS+ CGG L+K + +P E + T P+P AP P+ Y F G+GTYY +AGNC F D+ YSG+ PVALNA QY S MCG+CV+G+GTGGG G+ P+G F GFI D+CPEC GDLDF + DGRWDIEW F+ CPG + V E P+YWKI RGT PVE LT+ G RTDDN + +E G P+ Q V T+ G E ++S+
Sbjct: 111 EHLGCYVDNGMVNSSPHLPLVLD-AMTNELCYDRCHELGAFFMGTQKGNECRC-SREEDLDYFSFESGVCDEPCAGDSTETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEPAPEPVVSTPAPSMSEAESKTPISGGVYGTTFEGDGTYYTGISAGNCGFFDDFPSIYSGMTPVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPIGTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVE-MTPYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.420e-50 Identity = 92/202 (45.54%), Postives = 127/202 (62.87%), Query Frame = 1
Query: 1249 EEGEYQHLGCFSDNVGDRILGHMYKNEEMTPDICNNYCKDFNAAYMSLQFGHECWCTRIGDEDYERHGVGVCDQYCAGDNSVTCGGNMAFDLYKLQWASQPVDSEYMGCYRDMTDRRLMTDMI-WDESMTPSLCRQHCEGTGAMYYGTQFGSECWCGSSSSRSDYERFGMGVCHMACSGDSSAACGGHSAFSLFKFSDGSKP 1851
+EG Y ++GCF+D+ DR+ +M + MT +C YC D A YM+ Q+G+ECWC+ + +Y+RH GVCD C GD + CGG AFDLYK+ ++P EY+GC+ D + RL+ D I MT ++CR +CE A +Y TQ+G ECWCG S+ DY+R G G C CSGD + ACGG AF+LFKF ++P
Sbjct: 430 DEG-YSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKFDGIAEP 630
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR) HSP 1 Score: 187 bits (474), Expect = 3.530e-49 Identity = 88/175 (50.29%), Postives = 115/175 (65.71%), Query Frame = 1
Query: 2176 PPMYQEKFSGEGTYYGVTTAGNCAFKGDYQ-KYSGLVPVALNAPQYDGSKMCGACVKGKGTGGGSGNTPV-GEFVGFISDQCPECSYGDLDFASSGDGRWDIEWEFIPCPGGGDPYFVFEGSNPFYWKISARGTTVPVEYLTVAGNEGRRTDDNFYVVEDGVPFNGQQSVWCKTL 2694
P Y+ F G+GTYYG TT GNCA + YSG+VPVA+N QY+ SK CGAC+ G G GSG PV G F ++ D+CPEC YGD+D + SGDGRW ++W FIPCPG +F+FEGSN FY K+ RG PV Y +V G +G +T DNFY++++G F +V +T+
Sbjct: 17 PGDYRRTFFGDGTYYGYTTRGNCAIRSPLPGMYSGMVPVAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPGEW-VFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGFRYPLTVQMRTV 190
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.000e-47 Identity = 93/230 (40.43%), Postives = 127/230 (55.22%), Query Frame = 1
Query: 1237 SLMNEEGEYQHLGCFSDNVGDRILGHMYKNEEMTPDICNNYCKDFNAAYMSLQFGHECWCTRIGDEDYERHGVGVCDQYCAGDNSVTCGGNMAFDLYKLQWASQPVDSEYMGCYRDMTDRRLMTDMI-WDESMTPSLCRQHCEGTGAMYYGTQFGSECWCGSSSSRSDYERFGMGVCHMACSGDSSAACG------------------------GHSAFSLFKFSDGSKP 1851
S+ EEG Y ++GCF+D+ DR+ +M + MT +C YC D A +M+ QFG ECWC+ + +Y+RH GVCD C G+ + CGG AFDLYK+ ++P EY+GC+ D + RL+ D I MT ++CR +CE A +Y TQ+G ECWCG S DY+R G G C CSGD + ACG G AF+LFKF ++P
Sbjct: 4 SMPAEEG-YSYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGVCDCECGGEATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYKHESFQPFLAVTLVPGGFDAFNLFKFDGVAEP 232
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR) HSP 1 Score: 179 bits (454), Expect = 1.760e-46 Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1
Query: 2176 PPMYQEKFSGEGTYYGVTTAGNCAFKGDYQK-YSGLVPVALNAPQYDGSKMCGACVKGKGTGGGSGNTPV-GEFVGFISDQCPECSYGDLDFASSGDGRWDIEWEFIPCPGGGDPYFVFEGSNPFYWKISARGTTVPVEYLTVAGNEGRRTDDNFYVVEDGVPFNGQQSVWCKTL 2694
P Y F GEGTYYG TT GNCA + Y+G++PVA+N QY+ S CGAC++ G G GSG P+ G F ++ D+CPEC YGD+D + GDGRW + W+FIPCPG +F+FEGSN +Y K+ RG PV L+V G G +T DNFY+V++G F +V +T+
Sbjct: 22 PNDYYRVFHGEGTYYGYTTRGNCAIRSPMPSMYNGMLPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPGE-FVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIVQNGGGFRFPITVQMRTV 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5270.12648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5270.12648.1 >prot_H-paniculata_contig5270.12648.1 ID=prot_H-paniculata_contig5270.12648.1|Name=mRNA_H-paniculata_contig5270.12648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=530bp MTRFLALLACTAPAIFAAPISLRGVPQDGTQRSLMNEEGEYQHLGCFSDNback to top mRNA from alignment at H-paniculata_contig5270:4780..13864+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5270.12648.1 ID=mRNA_H-paniculata_contig5270.12648.1|Name=mRNA_H-paniculata_contig5270.12648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9085bp|location=Sequence derived from alignment at H-paniculata_contig5270:4780..13864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5270:4780..13864+ >mRNA_H-paniculata_contig5270.12648.1 ID=mRNA_H-paniculata_contig5270.12648.1|Name=mRNA_H-paniculata_contig5270.12648.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3180bp|location=Sequence derived from alignment at H-paniculata_contig5270:4780..13864+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |