mRNA_H-paniculata_contig5256.12631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5256.12631.1
Unique NamemRNA_H-paniculata_contig5256.12631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5256.12631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5256contigH-paniculata_contig5256:13299..14051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size355
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5256.12631.1prot_H-paniculata_contig5256.12631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5256 13299..14051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930526.2693727-CDS-H-paniculata_contig5256:13298..134891622930526.2693727-CDS-H-paniculata_contig5256:13298..13489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5256 13299..13489 -
1691481332.1944277-CDS-H-paniculata_contig5256:13298..134891691481332.1944277-CDS-H-paniculata_contig5256:13298..13489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5256 13299..13489 -
1622930526.2842264-CDS-H-paniculata_contig5256:13677..137881622930526.2842264-CDS-H-paniculata_contig5256:13677..13788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5256 13678..13788 -
1691481332.2036939-CDS-H-paniculata_contig5256:13677..137881691481332.2036939-CDS-H-paniculata_contig5256:13677..13788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5256 13678..13788 -
1622930526.2962432-CDS-H-paniculata_contig5256:13999..140511622930526.2962432-CDS-H-paniculata_contig5256:13999..14051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5256 14000..14051 -
1691481332.216686-CDS-H-paniculata_contig5256:13999..140511691481332.216686-CDS-H-paniculata_contig5256:13999..14051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5256 14000..14051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5256.12631.1

>prot_H-paniculata_contig5256.12631.1 ID=prot_H-paniculata_contig5256.12631.1|Name=mRNA_H-paniculata_contig5256.12631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
RRHRRRARQFGRQGRGRGARRQCIGGGSFGRRGREEAKEEPIRRDVQEVV
HVRKAVCGRRRYSRRERRRVLTFGRCFASGGVGRCIFTVGFRGRFDAGGI
RRRVLTVRRAIAAVSTG*
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mRNA from alignment at H-paniculata_contig5256:13299..14051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5256.12631.1 ID=mRNA_H-paniculata_contig5256.12631.1|Name=mRNA_H-paniculata_contig5256.12631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at H-paniculata_contig5256:13299..14051- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCCATCGGCGTAGGGCTAGGCAGTTTGGTCGGCAAGGGCGAGGCAG
AGGTATGTAGTTCGGCTAGTCCGTTTTTCGTTTTGGTGTTTCGTGTCGTT
TCCGTATTTCGTTTTGGTTTCGGCGACCCAGGAGAGGGAGAGATCTATTC
CCGCTTTTGTATCGCAAGTACGTGGGAGGGGTGGTCCATCATGTGTGATC
CGTAGGTGTTTTATTTACTTTTCGTTGGTTTTTCGCGCGAATGGCGGTGT
AATCCTCGAGCAGGTGCCCGACGCCAGTGTATCGGTGGAGGCTCCTTCGG
TAGACGTGGACGCGAAGAAGCCAAAGAAGAGCCTATTCGGCGGGATGTTC
AAGAAGTCGTCCATGTCCGGAAAGGTGAGTATATCTGTGCCCGTCCGTGT
TCCATTCATGTCGGGGTATTTTTCTTGGATGTGTTGGCGTGGCGTCGATC
GTTAATGCATGGTACAGCACACGGCTAGCGCTCTCCGCTTCTCCTTTGTT
ACAGTCCAGTAGATGGTTACGGCGTTTAACCACTAGGTCGCACCTCGTTC
TTACTGTCGCAGCTGTCTGTGGGCGACGTCGATATTCCCGACGTGAGCGG
CGACGTGTCCTTACCTTCGGGAGATGTTTCGCTTCCGGAGGTGTCGGGAG
ATGTATCTTTACCGTCGGCTTCCGGGGACGTTTCGATGCCGGCGGTATCA
GGAGACGTGTCCTTACCGTCCGGCGAGCTATCGCTGCCGTCAGTACCGGG
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5256:13299..14051-

>mRNA_H-paniculata_contig5256.12631.1 ID=mRNA_H-paniculata_contig5256.12631.1|Name=mRNA_H-paniculata_contig5256.12631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig5256:13299..14051- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCCATCGGCGTAGGGCTAGGCAGTTTGGTCGGCAAGGGCGAGGCAG
AGCGGCGCCATCGGCGTAGGGCTAGGCAGTTTGGTCGGCAAGGGCGAGGC
AGAGGTGCCCGACGCCAGTGTATCGGTGGAGGCTCCTTCGGTAGACGTGG
ACGCGAAGAAGCCAAAGAAGAGCCTATTCGGCGGGATGTTCAAGAAGTCG
TCCATGTCCGGAAAGGTGCCCGACGCCAGTGTATCGGTGGAGGCTCCTTC
GGTAGACGTGGACGCGAAGAAGCCAAAGAAGAGCCTATTCGGCGGGATGT
TCAAGAAGTCGTCCATGTCCGGAAAGCTGTCTGTGGGCGACGTCGATATT
CCCGACGTGAGCGGCGACGTGTCCTTACCTTCGGGAGATGTTTCGCTTCC
GGAGGTGTCGGGAGATGTATCTTTACCGTCGGCTTCCGGGGACGTTTCGA
TGCCGGCGGTATCAGGAGACGTGTCCTTACCGTCCGGCGAGCTATCGCTG
CCGTCAGTACCGGGTGACTGTCTGTGGGCGACGTCGATATTCCCGACGTG
AGCGGCGACGTGTCCTTACCTTCGGGAGATGTTTCGCTTCCGGAGGTGTC
GGGAGATGTATCTTTACCGTCGGCTTCCGGGGACGTTTCGATGCCGGCGG
TATCAGGAGACGTGTCCTTACCGTCCGGCGAGCTATCGCTGCCGTCAGTA
CCGGGTGA
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