mRNA_H-paniculata_contig52508.12624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 6.830e-19 Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
LV TD+MGP +P ALGGF Y+ K D+H KW E +L+K K T+ A Q F QSV+ P R+E +RADKGGEY
Sbjct: 328 LVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEY 400
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.570e-18 Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
V+TD++GPI+P A GG+ YV K +DE+++ YL++SK + ++ F+Q +VIP+G R+ERLR+D GGEY
Sbjct: 49 VYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEY 120
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 4.030e-18 Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
V+TD++GPI+P A GG+ YV K +DE+++ YL++SK + ++ F+Q +VIP+G R+ERLR D GGEY
Sbjct: 35 VYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEY 106
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.700e-17 Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
V+TD++GPI+P A GGF YV K +DE+++ YL+++K + + + F+ +VIP+G R+ERLR+D GGEY
Sbjct: 531 VYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEY 602
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.330e-15 Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
LV TD++GPI+P A+GG+ Y+ K +D T+ Y + KGD LS+ ++VQ V IP G R++ L +D GGEY
Sbjct: 300 LVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEY 372
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A811RG30_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RG30_9POAL) HSP 1 Score: 72.8 bits (177), Expect = 2.640e-13 Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
LV D+ GPITPE GG KY D+H++W E ++LKSK L AF + V SG +I+ LR+D+GGE+
Sbjct: 387 LVHVDLCGPITPETAGGNKYFILLVDDHSRWMEVHMLKSKDQALIAFVKYKAQVENESGCKIKTLRSDRGGEF 459
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A4S4K8M5_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K8M5_9APHY) HSP 1 Score: 67.8 bits (164), Expect = 1.530e-11 Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
V +DV GP E LGG KY +D+H++WT TYL+++K + +QSFV + G ++ L +D+GGEY
Sbjct: 595 VHSDVWGPAPVETLGGRKYYVSFTDDHSRWTVTYLMRTKDEVFRHYQSFVALMKAHHGVAVKLLHSDRGGEY 666
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 2.100e-11 Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
+V TD++GPI+ ALGG+ Y+ K +D T+ Y + K + L F +F Q V IPSG RI+RL +D EY
Sbjct: 234 VVSTDLIGPISLPALGGYSYISKFNDYITRLNAVYFIAYKDEALLPFVNFTQDVAIPSGLRIQRLHSDNRKEY 306
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A438E9S1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E9S1_VITVI) HSP 1 Score: 65.5 bits (158), Expect = 9.840e-11 Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
L+ TD+ GP+TP ALGG+KY D+ +++ L+ K D+L+ F++F V + G I+ +++D+GGEY
Sbjct: 265 LIHTDICGPLTPTALGGYKYFITFIDDFSRYGYAELIHEKSDSLNVFKAFKAKVELQLGKPIKAVKSDRGGEY 337
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A830BAC2_9LAMI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BAC2_9LAMI) HSP 1 Score: 65.5 bits (158), Expect = 9.840e-11 Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
L+ TDV GP++ A GG+ Y +D+++++ YL+K K +T F+ F V G RI++LR+D+GGEY
Sbjct: 412 LIHTDVCGPLSVSARGGYSYFVTFTDDYSRYGFVYLMKYKSETFERFKDFRHEVENQLGRRIKKLRSDRGGEY 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig52508.12624.1 >prot_H-paniculata_contig52508.12624.1 ID=prot_H-paniculata_contig52508.12624.1|Name=mRNA_H-paniculata_contig52508.12624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp MGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIback to top mRNA from alignment at H-paniculata_contig52508:155..373+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig52508.12624.1 ID=mRNA_H-paniculata_contig52508.12624.1|Name=mRNA_H-paniculata_contig52508.12624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig52508:155..373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig52508:155..373+ >mRNA_H-paniculata_contig52508.12624.1 ID=mRNA_H-paniculata_contig52508.12624.1|Name=mRNA_H-paniculata_contig52508.12624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig52508:155..373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |