mRNA_H-paniculata_contig52508.12624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52508.12624.1
Unique NamemRNA_H-paniculata_contig52508.12624.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.830e-19
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            LV TD+MGP +P ALGGF Y+ K  D+H KW E +L+K K  T+ A Q F QSV+ P   R+E +RADKGGEY
Sbjct:  328 LVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEY 400          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.570e-18
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            V+TD++GPI+P A GG+ YV K +DE+++    YL++SK + ++    F+Q +VIP+G R+ERLR+D GGEY
Sbjct:   49 VYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEY 120          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.030e-18
Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            V+TD++GPI+P A GG+ YV K +DE+++    YL++SK + ++    F+Q +VIP+G R+ERLR D GGEY
Sbjct:   35 VYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEY 106          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.700e-17
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            V+TD++GPI+P A GGF YV K +DE+++    YL+++K + +   + F+  +VIP+G R+ERLR+D GGEY
Sbjct:  531 VYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEY 602          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.330e-15
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            LV TD++GPI+P A+GG+ Y+ K +D  T+    Y +  KGD LS+  ++VQ V IP G R++ L +D GGEY
Sbjct:  300 LVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEY 372          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A811RG30_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RG30_9POAL)

HSP 1 Score: 72.8 bits (177), Expect = 2.640e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            LV  D+ GPITPE  GG KY     D+H++W E ++LKSK   L AF  +   V   SG +I+ LR+D+GGE+
Sbjct:  387 LVHVDLCGPITPETAGGNKYFILLVDDHSRWMEVHMLKSKDQALIAFVKYKAQVENESGCKIKTLRSDRGGEF 459          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A4S4K8M5_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K8M5_9APHY)

HSP 1 Score: 67.8 bits (164), Expect = 1.530e-11
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    4 VFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            V +DV GP   E LGG KY    +D+H++WT TYL+++K +    +QSFV  +    G  ++ L +D+GGEY
Sbjct:  595 VHSDVWGPAPVETLGGRKYYVSFTDDHSRWTVTYLMRTKDEVFRHYQSFVALMKAHHGVAVKLLHSDRGGEY 666          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.100e-11
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            +V TD++GPI+  ALGG+ Y+ K +D  T+    Y +  K + L  F +F Q V IPSG RI+RL +D   EY
Sbjct:  234 VVSTDLIGPISLPALGGYSYISKFNDYITRLNAVYFIAYKDEALLPFVNFTQDVAIPSGLRIQRLHSDNRKEY 306          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A438E9S1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E9S1_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 9.840e-11
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            L+ TD+ GP+TP ALGG+KY     D+ +++    L+  K D+L+ F++F   V +  G  I+ +++D+GGEY
Sbjct:  265 LIHTDICGPLTPTALGGYKYFITFIDDFSRYGYAELIHEKSDSLNVFKAFKAKVELQLGKPIKAVKSDRGGEY 337          
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Match: A0A830BAC2_9LAMI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BAC2_9LAMI)

HSP 1 Score: 65.5 bits (158), Expect = 9.840e-11
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 LVFTDVMGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVIPSGSRIERLRADKGGEY 219
            L+ TDV GP++  A GG+ Y    +D+++++   YL+K K +T   F+ F   V    G RI++LR+D+GGEY
Sbjct:  412 LIHTDVCGPLSVSARGGYSYFVTFTDDYSRYGFVYLMKYKSETFERFKDFRHEVENQLGRRIKKLRSDRGGEY 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52508.12624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE6.830e-1956.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCZ9_9PHAE2.570e-1848.61Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KFB1_9PHAE4.030e-1848.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.700e-1747.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAG6_9PHAE1.330e-1546.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A811RG30_9POAL2.640e-1346.58Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A4S4K8M5_9APHY1.530e-1141.67Uncharacterized protein (Fragment) n=1 Tax=Hermans... [more]
A0A6H5JV56_9PHAE2.100e-1143.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A438E9S1_VITVI9.840e-1138.36Retrovirus-related Pol polyprotein from transposon... [more]
A0A830BAC2_9LAMI9.840e-1139.73Retrovirus-related pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52508contigH-paniculata_contig52508:155..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930524.7013648-UTR-H-paniculata_contig52508:154..1721622930524.7013648-UTR-H-paniculata_contig52508:154..172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52508 155..172 +
1691481331.4470675-UTR-H-paniculata_contig52508:154..1721691481331.4470675-UTR-H-paniculata_contig52508:154..172Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52508 155..172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930524.7170014-CDS-H-paniculata_contig52508:172..3731622930524.7170014-CDS-H-paniculata_contig52508:172..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52508 173..373 +
1691481331.4576092-CDS-H-paniculata_contig52508:172..3731691481331.4576092-CDS-H-paniculata_contig52508:172..373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52508 173..373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52508.12624.1prot_H-paniculata_contig52508.12624.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52508 173..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52508.12624.1

>prot_H-paniculata_contig52508.12624.1 ID=prot_H-paniculata_contig52508.12624.1|Name=mRNA_H-paniculata_contig52508.12624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MGPITPEALGGFKYVGKTSDEHTKWTETYLLKSKGDTLSAFQSFVQSVVI
PSGSRIERLRADKGGEY
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mRNA from alignment at H-paniculata_contig52508:155..373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52508.12624.1 ID=mRNA_H-paniculata_contig52508.12624.1|Name=mRNA_H-paniculata_contig52508.12624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig52508:155..373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGTCTTCACAGACGTCATGGGGCCCATCACGCCGGAGGCTCTCGGGGG CTTCAAGTACGTTGGCAAGACCTCCGACGAACACACCAAATGGACCGAAA CCTACCTGTTAAAGTCCAAGGGCGACACTCTCAGCGCATTCCAGTCGTTC GTGCAATCGGTGGTGATTCCTAGCGGCTCCCGCATCGAGCGCCTGAGGGC TGACAAAGGAGGCGAATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig52508:155..373+

>mRNA_H-paniculata_contig52508.12624.1 ID=mRNA_H-paniculata_contig52508.12624.1|Name=mRNA_H-paniculata_contig52508.12624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig52508:155..373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCCCATCACGCCGGAGGCTCTCGGGGGCTTCAAGTACGTTGGCAA
GACCTCCGACGAACACACCAAATGGACCGAAACCTACCTGTTAAAGTCCA
AGGGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCAATCGGTGGTGATT
CCTAGCGGCTCCCGCATCGAGCGCCTGAGGGCTGACAAAGGAGGCGAATA
TATGGGGCCCATCACGCCGGAGGCTCTCGGGGGCTTCAAGTACGTTGGCA
AGACCTCCGACGAACACACCAAATGGACCGAAACCTACCTGTTAAAGTCC
AAGGGCGACACTCTCAGCGCATTCCAGTCGTTCGTGCAATCGGTGGTGAT
TCCTAGCGGCTCCCGCATCGAGCGCCTGAGGGCTGACAAAGGAGGCGAAT
AT
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