mRNA_H-paniculata_contig5249.12618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5249.12618.1
Unique NamemRNA_H-paniculata_contig5249.12618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 1.850e-128
Identity = 182/273 (66.67%), Postives = 219/273 (80.22%), Query Frame = 1 
Query:    1 ACDAG-DPVATVRYNIESDRLYLEGSGCITPRDIFAAK--------------NLSASIPIKAITEDGEESDEETGFWLFTSDVYVYTGVKLELHKDSGTTGLRLKSDDGPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVY 774
            ACD   +  A++R+NIE+DRLYLEG GCITP DI+ AK                +A+IPI  IT+DGE SD ETG+WLFTSDVY+Y GVKLELH +SGTTG+RLKSD   IELRAHGGWLS+LNTE+S+W+  + ++ SN +  RSY+TAISE L+SPP+ C G AKN+ GEAR DIINSEVHHLG+  TEAYGI WKVRGFC++ +NED+FD+VNVRG+IRFSD+H NYFGMY+YGH DGLWEYNLM +N +YGFDPHDDSDNLRIHNNIV+
Sbjct:   28 ACDYTLEAKASLRFNIETDRLYLEGGGCITPSDIYLAKLTNVTEDDGNTLTAEEAAAIPITPITKDGEFSDAETGYWLFTSDVYIYDGVKLELHAESGTTGMRLKSDSKVIELRAHGGWLSLLNTELSSWDVDEADYASNYSAPRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVW 300
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 1.910e-87
Identity = 129/203 (63.55%), Postives = 159/203 (78.33%), Query Frame = 1 
Query:  181 FWLFTSDVYVYTGVKLELHKDSGTTGLRLKSDDGPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDI-----INSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVY 774
            +WLFTSDVY+Y GVKLELH +SGTTG+RLKSD   IELRAHGGWLS+LNTE+S+W+  + ++ SN +  RSY+TAISE LE+PP+ C G AKN+ GEAR D            H  + + + Y    +VRGFC++ +NED+FD+VNVRGNIRFSD+H NYFGMY+YGH DGLWEYNLM +N +YGFDPHDDSDNLRIHNNIV+
Sbjct:   27 YWLFTSDVYIYDGVKLELHAESGTTGMRLKSDSKVIELRAHGGWLSLLNTELSSWDVDEADYASNYSAPRSYVTAISEVLETPPQTCVGHAKNDAGEARFDSDVEPRAAPSAQHTRFFSLQTYARQ-QVRGFCVDLSNEDLFDRVNVRGNIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHNNIVW 228
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 4.030e-84
Identity = 136/265 (51.32%), Postives = 184/265 (69.43%), Query Frame = 1 
Query:    4 CDAGDPVATVRYNIESDRLYLEGSG-CITPRDIFAAKNLSASIPIKAITEDGEESDEETGFWLFTSDVYVYTGVKLELHKDSGTTGLRLKSDD-GPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGG---RSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVYGNG 783
            C A  P AT  +  + D LY+EG G C+T  DI+   N   + P+   T DG+ESD ETG WL T  +Y+  G  L LH D G T LR+ S     + L   GG++S+LNT+V++W+  + E ++    G   RSY++A+SE +  P + C G A ++ GEAR+DIINS+V +LGY+A E+YG+ +KVRG+C +++N ++FD+VNVRG+IRFSD+H N+FG YSYGH DGLWEYN MR++  YGFDPHDDSDNLRIHNNIVY NG
Sbjct:   39 CPADAPEATFSWTNDGDYLYVEGDGSCVTLPDIY---NGVDNPPLTYHTVDGDESDTETGIWLLTKHLYMRPGTTLLLHDDLGCTELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSE-MTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQDGLWEYNTMRNSGYYGFDPHDDSDNLRIHNNIVYENG 299
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 2.730e-73
Identity = 130/272 (47.79%), Postives = 173/272 (63.60%), Query Frame = 1 
Query:    4 CDAGDPVATVRYNIESDRLYLEGS------GCITPRDIFAAKNLSASIPIKAIT-EDGEESDEETGFWLFTSDVYVYTGVKLELHKDSGTTG----LRLKSD-DGPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVYGNG 783
            CD+ D   ++RY   + RLYLE +      GC+T   I+  +N +   P+ A+  E G ES+ ETG WL T ++YV  G+ L+++  +G  G    LRL S  D  I LRAHGG L  + T+V +W+      + + T GRSYI+AISE +    E C G AKN +GEARMDI NSE+ +LG++ +E+YG+ WKVRGFC +K+N  IFD+VNV GN+  SD+H   FG+Y+YGH  G W  N M DN  YGFDPHDDSD L IH+N VY NG
Sbjct:   42 CDS-DIAVSIRYASSTKRLYLESADGETRGGCVTLGQIW--ENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVY-GTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNG 309
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 9.090e-73
Identity = 132/271 (48.71%), Postives = 174/271 (64.21%), Query Frame = 1 
Query:    4 CDAGDPVATVRYNIESDRLYLEGS------GCITPRDIFAAKNLSASIPIKAIT-EDGEESDEETGFWLFTSDVYVYTGVKLELHKDSG---TTGLRLKS-DDGPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVYGNG 783
            CD+   V+ VRYN ES RLY+E +      GC+T   I+  + +  S P+ A+  + G+ S   TG WL T ++YV  G+ L++H  S       LRL S  D  I LRA+GG L  L+T+V AW+      + + + GRSYI+A+SE +    + C+GRAKNN+GEARMDI NSE+ +LGY  TE YG+ WKVRGFC++K N ++FD VNV GNI  SD+H N FG+Y+YGH  G W  N M DN  YGFDPHDDSD L IH+N V+ NG
Sbjct:   10 CDSSIAVS-VRYNAESARLYIESANGRTRGGCVTLEQIWE-QQVDGS-PLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNG 277
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.370e-71
Identity = 128/271 (47.23%), Postives = 174/271 (64.21%), Query Frame = 1 
Query:    4 CDAGDPVATVRYNIESDRLYLEGS------GCITPRDIFAAKNLSASIPIKAI-TEDGEESDEETGFWLFTSDVYVYTGVKLELHKDSG---TTGLRLKS-DDGPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVYGNG 783
            CD    V+ +RY+   +RLYLE +      GC+T   I+  +   A  P+ A+ ++ G+ SD  TG WL T +++V  G+ L++H  S       LRL S  D  I LRAHGG L  L+T+V AW+      + +   GRSY++A+SE +    + C+GRAKNN+GEARMDI +SE+ +LGY  +E+YG+ WKVRGFC++K+N D+F+ VNV GNI  SD+H N FG+Y+YGH  G W  N M DN  YGFDPHDDSD L IH+N VY NG
Sbjct:   36 CDESIAVS-IRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEA--PLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNG 303
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 232 bits (591), Expect = 8.390e-70
Identity = 127/272 (46.69%), Postives = 172/272 (63.24%), Query Frame = 1 
Query:    1 ACDAGDPVATVRYNIESDRLYLEGS------GCITPRDIFAAKNLSASIPIKAIT-EDGEESDEETGFWLFTSDVYVYTGVKLELH-KDSGTTG--LRLKSDDGP-IELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVYGNG 783
            +C +   V+ +RY+  S RLYLE +      GC+T  DI+  ++L    P+ A+    G+ S   TG WL T  +YV  G+ L++H K +G     LRL S     I LRAHGG L  ++T+V AW+    +  ++ + GRSYI+A+SE +    + C GRAK N+GEARMDI +SE+ +LGY  +E+YG+ WKVRG C + +N ++FD VNV GNI  SD+H NYFG+Y+YGH  G W  N M  N EYGFDPHDDSD L IH+N VY NG
Sbjct:   35 SCKSSTKVS-IRYSKTSKRLYLESADGNTRGGCVTLEDIW--RDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNG 303
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.450e-68
Identity = 128/265 (48.30%), Postives = 172/265 (64.91%), Query Frame = 1 
Query:    4 CDAGDPVATVRYNIESDRLYLEGS----GCITPRDIFAAKNLSASIPIKAITEDGEESDEETGFWLFTSDVYVYTGVKLELH---KDSGTTGLRLKSDDGP-IELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVY 774
            CD+ D V  VRY   + R+Y+E +    GC T  +I+ + +     P++  T   E  D  TG WL T ++YV  GV L++H   +      LRL SD+   I LRAHGG  S L T+V +WNE  G  ++N   GRSYI+A+SE +  P + C+G AK+ +GEARMD+I+SE+  LGY  +E+YG+ WKVRGFCI+K+N D+FD VNV G++  S++HDNYFG YSYGH  G W YN M +N+EYGFDPHDDSD L I  N V+
Sbjct:  351 CDSID-VPQVRYASTTARIYVEQATNRGGCFTLTEIWESGSRPL-YPLEPATN--ERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSWNEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVEYGFDPHDDSDYLHIVGNDVW 611
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.970e-68
Identity = 123/268 (45.90%), Postives = 170/268 (63.43%), Query Frame = 1 
Query:    1 ACDAGDPVATVRYNIESDRLYLEGS------GCITPRDIFAAKNLSASIPIKAIT-EDGEESDEETGFWLFTSDVYVYTGVKLELHKDSG---TTGLRLKSDDGP-IELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIV 771
            +C +   V+ +RY+  S RLYLE +      GC+T  +I+  K+L  S P+ A+    G+ S   TG WL T D+YV  G+ L++H  S       LRL S     I LRAHGG L  ++T+V AW+    +  ++ +  RSYI+A+SE +    E C G+AK  +GEARMDI +SE+ +LGY+ +E+YG+ WKVRGFC + +N ++FD+VNV GNI  SD+H N+FG+Y+YGH  G W  N M  N EYGFDPHDDSD L IH+N V
Sbjct:   38 SCKSSTKVS-IRYSASSKRLYLESADGKTRGGCVTLEEIW--KDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNKV 302
[Close]
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 4.940e-68
Identity = 126/271 (46.49%), Postives = 171/271 (63.10%), Query Frame = 1 
Query:    4 CDAGDPVATVRYNIESDRLYLEGS------GCITPRDIFAAKNLSASIPIKAITED-GEESDEETGFWLFTSDVYVYTGVKLELH-KDSGTTG--LRLKS-DDGPIELRAHGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGRAKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKVNVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNLRIHNNIVYGNG 783
            CD+ D   ++RY   + RLYLE +      GC T   I+ ++  +   P+ A+  D G+ S+ ETG WL T ++YV  G+ L+++  D G     LRL S  +  I LRAHGG L  + T+V +W+      + + T GRSYI+A+SE +    E C G AKN +GEARMDI NSE+ +LG++ +E+YG+ WKVRGFC +K+N +IFD VNV GN+  SD+H   FG+Y+YGH  G W  N M DN  YGFDPHDDSD L IH+N VY NG
Sbjct:   43 CDS-DIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESR--AGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNG 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5249.12618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9I9_9PHAE1.850e-12866.67MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LKL1_ECTSI1.910e-8763.55Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G1_ECTSI4.030e-8451.32Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE2.730e-7347.79MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAJ8_9PHAE9.090e-7348.71Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE1.370e-7147.23Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
A8CEP1_SACJA8.390e-7046.69Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D7FMJ0_ECTSI1.450e-6848.30Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE1.970e-6845.90Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
D7FXE4_ECTSI4.940e-6846.49Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5249contigH-paniculata_contig5249:203..12957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue5.5e-48
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionmannuronan C-5 epimerase C-terminal fragment
Ec32 orthologEc-16_003370.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons8
Model size783
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5249.12618.1prot_H-paniculata_contig5249.12618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5249 203..12957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.9764712-CDS-H-paniculata_contig5249:202..2721622930523.9764712-CDS-H-paniculata_contig5249:202..272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 203..272 -
1691481331.1381612-CDS-H-paniculata_contig5249:202..2721691481331.1381612-CDS-H-paniculata_contig5249:202..272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 203..272 -
1622930523.9941237-CDS-H-paniculata_contig5249:3094..31541622930523.9941237-CDS-H-paniculata_contig5249:3094..3154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 3095..3154 -
1691481331.1484864-CDS-H-paniculata_contig5249:3094..31541691481331.1484864-CDS-H-paniculata_contig5249:3094..3154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 3095..3154 -
1622930524.0069962-CDS-H-paniculata_contig5249:4117..42211622930524.0069962-CDS-H-paniculata_contig5249:4117..4221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 4118..4221 -
1691481331.1567407-CDS-H-paniculata_contig5249:4117..42211691481331.1567407-CDS-H-paniculata_contig5249:4117..4221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 4118..4221 -
1622930524.0199158-CDS-H-paniculata_contig5249:5461..55261622930524.0199158-CDS-H-paniculata_contig5249:5461..5526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 5462..5526 -
1691481331.167125-CDS-H-paniculata_contig5249:5461..55261691481331.167125-CDS-H-paniculata_contig5249:5461..5526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 5462..5526 -
1622930524.0393443-CDS-H-paniculata_contig5249:6754..69051622930524.0393443-CDS-H-paniculata_contig5249:6754..6905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 6755..6905 -
1691481331.1776927-CDS-H-paniculata_contig5249:6754..69051691481331.1776927-CDS-H-paniculata_contig5249:6754..6905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 6755..6905 -
1622930524.0545578-CDS-H-paniculata_contig5249:7539..76171622930524.0545578-CDS-H-paniculata_contig5249:7539..7617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 7540..7617 -
1691481331.186204-CDS-H-paniculata_contig5249:7539..76171691481331.186204-CDS-H-paniculata_contig5249:7539..7617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 7540..7617 -
1622930524.0683374-CDS-H-paniculata_contig5249:9058..91341622930524.0683374-CDS-H-paniculata_contig5249:9058..9134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 9059..9134 -
1691481331.1940603-CDS-H-paniculata_contig5249:9058..91341691481331.1940603-CDS-H-paniculata_contig5249:9058..9134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 9059..9134 -
1622930524.0824604-CDS-H-paniculata_contig5249:12778..129571622930524.0824604-CDS-H-paniculata_contig5249:12778..12957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 12779..12957 -
1691481331.2018816-CDS-H-paniculata_contig5249:12778..129571691481331.2018816-CDS-H-paniculata_contig5249:12778..12957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5249 12779..12957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5249.12618.1

>prot_H-paniculata_contig5249.12618.1 ID=prot_H-paniculata_contig5249.12618.1|Name=mRNA_H-paniculata_contig5249.12618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
ACDAGDPVATVRYNIESDRLYLEGSGCITPRDIFAAKNLSASIPIKAITE
DGEESDEETGFWLFTSDVYVYTGVKLELHKDSGTTGLRLKSDDGPIELRA
HGGWLSMLNTEVSAWNEKDGEHESNTTGGRSYITAISEKLESPPEMCSGR
AKNNLGEARMDIINSEVHHLGYKATEAYGIVWKVRGFCINKTNEDIFDKV
NVRGNIRFSDLHDNYFGMYSYGHADGLWEYNLMRDNLEYGFDPHDDSDNL
RIHNNIVYGNG
back to top

mRNA from alignment at H-paniculata_contig5249:203..12957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5249.12618.1 ID=mRNA_H-paniculata_contig5249.12618.1|Name=mRNA_H-paniculata_contig5249.12618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12755bp|location=Sequence derived from alignment at H-paniculata_contig5249:203..12957- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTGATGCAGGAGACCCTGTGGCTACTGTACGCTACAATATCGAGTC
TGACAGGCTTTACCTCGAGGGGTCAGGGTGTATCACGCCTCGGGATATTT
TTGCTGCGAAGAATTTGTCTGCCAGCATTCCCATAAAGGCCATCACAGAG
GATGGCGAAGAATCGGATGAGGAAACGGGGTGAGTTCAGGTCCTGTCGGG
ATATAGATTGAAGGCATCTCAACAAAGGGCGACCTGAGAGGACGCATGAT
GCATGAGTTCTCGCTTGGTCTAGTCTAGACCGAACCTTATCCATTCGGGA
CGAGGTGGACCCGGTTTCGTGTTGGTGTACTGCTCGTTAAACTAGTACTG
ATTGGAGGCAGTTATTCTCTATCATGAAAAAATGGAGAAACCTAGGAGAA
GACAGTACAGACAGTACTTCTTGTAGTGCGGTCGTTTTTGCAGCTTGGTT
TGTGCAAACTTGCAGGGTTGCTCGTTCTTGTGTCACATCCCCTGACGCGA
TGGTCATTCCCAGCTGACATGAAGAGGGTACACTCAGCACACTGACTGTG
GTTAATATGGACAACACGCAGTCGTGGCCGTGGTGGAGGATTTAGCGTCG
TGTCATGTATTACCTGAGGCGATGCGCTTTTCACCCTTGAACTCGTCCGC
ACTATCCGAACAGACTTTTCCTGAACACTCCTTCCATCATACATATCTCT
TCTCTGTCCCAAGAAAATCCTTAACCTCGGCACAACTTCGATGGTAGAAG
ATGAGTCCGATTTATTTATGACTCAACGACCGAGACAACAAACCCGTTCA
TGGAGATGGGCGGAGTCACTGGTGTTGAGGAACGGCATCCCGAATCGCAC
GATAATTATTACTGCAAGTATTACCAATCCCCAATCCCCAATGGATGTCA
CCCCTTGGAAGTAGGTGTAGTGTACGACCGCTCCCACAAATTCCATATCT
GGAAGTAACAAATTCGGCAGTGTTGACGTTATTCCCGAGGGGTACGTAGG
GCGCCATCCTCATTTATGCCGGATTATCGGATAGCACTCCCAATACCGAC
CCTTTGAGAATAGGGACTATTTTTTACAGTAACACCTATTTCACAGTATC
GCCCGTATCGGTTCCCAAATGTTCGCTTTGCTACTAAATAGTTTTTATTT
CCTCGCGGGGTTCTCATTATACAGCGCTGGTTAACGCCCAATACTTGTCC
GTTTCTGTTGTCGTTTTGTCGTCCTCGCTCCTATCGTTGTTCTCGAATGG
CAAGGAACATATTGGGTCCGTTGCCTATGATTTACGAAGGAATAGATACT
TCCGAGCATACTCACGAGCATATAAAATATCCTTGTCATTCCACTATTGG
CCTCCTTCTTTGATCTGAACTGGCTAAAGCCTTTGATGTATACTGTCGAA
TTCTGGATTTTGTGTTCGATCTTGTTTTTTGTTTATCACGGCTGTTTGTT
ATATGCCAACCATTTCATACTGTAATTTTGTAGTCACCCTACATCGCAGG
AGAGGGTACCTATCTCCCAATATAATTCGCAGCTGTAGGCAGGCCCCACC
GGCCTAGAATCGTCAGCTGCATGACAAAAGTCTAAATCTTAGATCTTGCC
AATGTTTGACGACAAGCCGAGTGTGCGACCATCAGCAGTAAGCATCCTGC
AGGGACCATCGATCGGTCTGGGACGGTCCCACCCTGCCAGTTGCCTCGTG
CGGATTGCTCTATCCCGCGTTCACTGACATGCCGAAATGGATACTGCTCT
AGTGGTAACACGCGATGCGGTGCTCACATTAATGGATAATAATCATAATA
AATACGAAGGAATATTCTACTGAGTAAGAATGCCTGAAATTATTTATACT
GCCCCCGTACTCCTTCCCGCCCCCGACCACCATCACGAATTTCGGCTCCT
GAGTCTGTTCACGTATATATATTCATTCATGTTCCTGCAATACAATTTTT
CCAGTACCCAGTGATAATGTTCCTCATCATTACCCTCTAGTAGTGGCAGT
TAGCTCCAGTGTTGACATTATCGACTATCCAAATTACTGAGTGTTTTTCA
GTATCGCCGCCCCGAAGTCTGGAAATACATCATATCTCACGATACCAACT
CTCCAAAGTACTGGCTATTTTTTCAGTGCCCTCAACATCGATGACCCGGC
GGAAACGTCATTTATGCACTTCAGATTTTTATTATGGAAACCGAAAAATT
AGCTGTGTCGTCATCCAAACCAGCTGGATAGGACACTTATGCCGTGGTGA
CCAATCAGATCGCCGAATATGAAACGGCTTGTCGTATAGTGTAGTCGTAT
TCTCTGTGAATCACTAGAATTACTATCGTTTTCCATCTTCGCCACAGCCT
TGAGGTCGAGCACACCAGACGCAGAATCATGCTTGCCAGATACATGAGGT
CGTTCCGCAGCTTTGTAGGCTTTCCAACTGTACCTATTAACTTCAACTAG
ACGGGTCTGCTGTTGTCTAGGCCATTCTGTGGCAAAAAGTAGGAGTCGCA
GCCTCTCGTTGCAGGAGATACTGTGCCATATCAGAGAGACCCCAGCCATA
TAGTTAATGGTTGTGTCAAACACGATCAACAGCGGATGTTCCAGGTGGCA
ATCGAGATCATGGCGTGGCGTCGAGGGGCCAATGCACTCCTATGCGGACT
AATTCTCGTACAAACGTGCACCCCCCCCGGACGAACAATGATCCATCGAA
GTTTCACAACGAAGATTGAAAAAGTATATCCCCTAAAATTCAGCATGATA
AATGATGTACGTCGCACGTTTATTGAATGTGCATCGGATCAAACAATATC
AAAACGAGTAATCAGAACTAAATGCGAAAATGACGACAGCCGTCCTCGAC
CTACGTTGGGAAATTGAGTTCTGAACTTGGTGCTTTGGTCCCCAACCATA
GTTTCGACTTTATGTTGTTGCTGGGTTTTTAATCCATGACCTTCAGGACG
AGAAGCCGATAAGCTTTCTATCAGTGTCGCCAATGTTGCGACGAGGGTAA
CTGTCCTTGATGGGCGCTGGGTGATTGGTACCCCTATTCAAGGTGGCCAT
GATAGGCACTTCATTATACTCCATTATATGCCCGCAACTTCTGAACCTTG
AGGCGAAAACCTTTAAATTGGTTTCGAGTGCTGGAAGTATTATTCGTACT
AGTCTGAGGGGTGGAATTCCTGGATGGAAAGTCTAAGGCAACGAGCCGTT
TCGTGAGGGGAGGTTTCGTTGCGAGCTACAGGCGTCGTGCTTTCCGTCTA
CAATATTAGGAGCGGGGGGGTACGCGGTCCAATTGCCGACAACGTGTACT
TTCTAGTTCTCTTCAACGGACTTTTCGAATCATCGTTGAAGATTTTGCAT
CCGATTCATGTTGCAAATCAATAGGTTGTATCCCGAGGTTTGAAACAAAA
CTCTAAGAACAGATCTCACAGAGCAGATCTCAGGGCTGATCACCGAAAAG
GTCACCCCTGTGACTGCGACATATCGCATATGCTGCAGGATGAAACGAAA
GAGTACCCCGTGGGTTGTTTGAAGTTAGAGCGATCTTCACATCCCTTTTC
TTTCGGTCATTTTCCACACGTCCAATGAAATGCCAATGGTAGCAGTGACA
ACATAATCGAGATCACATCTGGAATACGGTAGCGATCATGATAACTTGAT
TTGCAGGTGGCCTTGCCAGGATGTGCGCAGAACAGCACAGTGAGGTTTTT
TCCTATGATTGTCGCGCAAGGTTACGAAAGGCTAGATGTTGTGCACTTCT
TCGTAGGCAAAGCCCGTTGGTCGTGTTGGATACAACCATCAACGTTCACG
CGCGTTTGCTTTGATCGGTGCAGGTTCTGGCTGTTCACTTCTGACGTGTA
TGTTTACACAGGTGTCAAGCTTGAGCTTCATAAGGATTCGGGGACAACGG
TGAGTGAGAGCAAAAAGTCGGCTGTGATGCGTCGGTCATCACGAACAAAT
TCCTACTAAACTCCCTCTGGTGGTTTATCTGTGTTGTAATAGTGTGGGGA
AATCAAGAAAGTAGTCTTCTTTTTTTATTGGTTAGTTCAAGCAGAATGCG
CTCAACGTGATTCAGATAACGCTTCGTGAAATCGGAAATGTTTCAAGTTA
GTTGGCCTGCAACGCATTTCCAGAGCCACGACGTTCGTTACAGGCTGGTT
CGGGCGAGATAACCAAGCTTCATGTTCGTTTTCTCTTGGCAATTTTCCAA
TGTTTCAAATGGATTTTCGCACGTCTTCCTCACTCAAATTCCTAGGTATT
TAGTTGTTTTTTTCTTTCGCCTTTTGTCACTGGTTTTCTGAGCTCCCAAG
GTGATGTTAGTGATTCTAGGGTCCTGGAACTCCCGAGAACGGCGAAGTAA
ATCGAAACAAAAAAAAGAGTCATGAACACTTTCGCAAAAGTTCATTTGAA
AACTCGAAACGTTGCCGTGAGAACGCGGGCAAACGTAAATCGAACCGCGT
AAAATTGTGTTGTGGTATTATGTTGGAATTAGTACAGGAATTTGTGTAGA
AATCGGGTGAATTCGCGGTGGCGGCCTGGTGCAGGTATTTTGTTAAAATT
AGGGTCATACGGGTTTTAAAGATTTTCTTTAGGTCTTTTCCCTTTAGCTT
CTGTATATTATGCGCCTATTATTTATAGCTTAAGTTTAATGGGGGTTGTT
TATACTTTAACTGCTATACGTCAAACAGACTTTAAACGTTTAATTGCGTA
TACTTCTGTTGCTCATATGAATTTAGTTATTATAGGCTTCTTTACTGGTA
CAGTTATTGGAGTTGAAGCGGCTATTATTCAAAGTCGCCTGTGTGTGCCC
ACCCACGCATGCATGTGACTGCGTATCATTTCTCAGTTAGCATACCACCG
CTATGGCTGCGGAACTGGTGTGTGTGCTCATATTCAAAAACATTCAGGAC
GCATCTACGGATTGCGGCATAACTACATGGAGATGGTGCCCCTTTGTTTT
CTATTTATTTTGTACCCGCATTGTATGGACATCCTCCAAAAGCGTCGTCT
CTGTCTGGTGAACAGCGTAGTTCGATGAGACCTCTCTAACGAGCGCAACG
TTCGGTGTCACCAAGCCAACACCGTACATTTTTGAGTACATGCAATTTGG
AGAATGTTGGCATGGGGAGTGGATGATGTACAGCGTAAAATGTCCTCGAC
TTGACGTGTATGATGCAGTAATATATCTGTTACCAAGCGGGAGAGGGAGC
TATGTAGCTAGAGGAAGCCCTGCCGTTGTTGGAGTTTGTGTGAAAGGGCA
ACGTCATTTTCCAGCTCCCCGGCATACGTGGTATTTTCAAACGTCATGCC
CTTTTTTCTCTTTTTTTCGCCGATCGATGTCTTGTCACAGGGATTGCGGC
TAAAGTCAGATGACGGGCCGATAGAACTCCGCGCGCACGGTGGCTGGTTA
TCCATGCTCAACACCGAGGTGAACGATGAACACAAGGTGTCAACAGGGTG
CCTGTGAATAACGATGGTGTATCCTCTAGAGGCTCATGTCTGGGAATCAT
TTCCTTCCTGTTGATAGTTGTCGACATCACGCTATGGGATCGCGCGGTAG
GTTGCAAGCAGGTGTTGTCATGTATATTGTGTTGTCGATGTTGGCGTGTT
TTATGTGTATCTTTTGACTATATAGAGATGTCATGAAAAAAGATACCGGT
AAAACATATATTTCGAGAACGACTAGAGGTTCATTTATTTTTTTCAAATG
AGCATTTGACTGTGCAAGAGCTATAACTTTCGTCGAGGGACTTTTAAACT
CGAGGAGTAAATTCGGATAGATTTTGGAGGGAAAATAAAGTAAGCTCGAA
ATAATCCCTTGAAGTTGAACTAAGGAAGACGAAATGTAGGCCAACTTGAA
CATGAACGGCTCGAAAGCTTTCGCTTTTGTTGCATTTGTGGTGGACCAGT
GCTCCTATGATCACCCTGGTGTGTCCTATGCAGTATTGACCAACCACAAG
ATATATATGTTCTTCATCTAGTTCTCTGTTGTTGCTCGATCAGTCTTGCA
GCTTGAGAAACTGGACAATTTTGCCGTGTTATTGTTGCCGGTGCTGCTGC
AGGTGTCCGCTTGGAACGAAAAGGACGGTGAGCACGAATCCAACACAACG
GGAGGACGTTCATACATCACCGCGATCAGCGAGAAGCTCGAATCACCCCC
AGAGATGTGCAGTGGAAGGGCAAAGAATAATCTTGGCGAAGCGCGAATGG
ACAGTGAGTGTTTTCCGGATGATGACCGGTGTGTGTTTCACCTGGTGTTG
GTTAGAGCATGACCACCTCTAGTCACCGTTGAAAGTTTTTTTCTCGAGTT
GCACGCAATTTGACAGCCATGATAATAATATTTTTGTTAGTCGCTTGCGT
GTGTCATGCTCCATGACTGCATGTCATGCGCCCGTATTGAGAGCTATGGA
TGATGCCCGGTTGATGCGGGAAGACAGTAGACGAACAGTACGGCGCTCGG
GATAGATTATTGAAGTTATGTAGTTGATAACAATGTCACGGTTCTTGCCC
TGTTAAATGAGGTAGTTTGCAACGGGTGACATTTTGCTGAGAATGAATGT
ACTTGATTTCCCCCAATATACGGTTTCATCGAACCCCGCTGAGATTATTT
TCAAAGTCAATTTCTTCAATAGCGACGGTGCTCACTACACTCATAGCGGT
ATCTTTGGAACGATCTCGCTGAGATCTTTCGGTTGACCTCATGTTTCTTC
AGTGCTGGCTCTTATCGAGAAATCGAGACGACAAAAAAATAACGGGCGGT
GGGATAGCACTGCCTGCATATTACGGTACTTTCCCTGTGCCGTAGCCGAA
GTTTTTTTACTTTCGATCTTCACAGCGGAACTTCTCGTGGGTTTATTGTT
TACAAAAGCCAGGACAGGGGAGATTTACGTCTATTATCCCGAGATTTGAT
TTATAAAAAAAAAAATCCGGTGGAATACATTGGACCCAAGAATTGACCTG
TTGGGCCGTTTTACGACGAGTTTGGACTAGAGCACCGCGGCTCTCAATAG
ATCACCGAGCACATAGGAAATCGTGCGTATGGGAGGGCCTAGTGTTGCTT
TTGTCTGCGCCTCGCTGATACCCCTTGTACTTGGTGGATTTCCTTGAAAA
ATATGGGAGATTCCGAGTATGTTTTCTCAATAAGAAAAGAATGACGCTAA
CGCCCTCTTCAAACTCGAGTAACTGAATGGGTCGGAGGAAGAGTTTATAT
AAACACTTTTTGCTCTTTTGTGTTTCTTTGTTGACCAAATCGATATTTTT
TTTCTTGTATTTTGCCAATATTTTGTATATTTTTCGCGTAGTGTCATTTT
TTGGATGTTCGTCGCTTCGTTGTTTGACGGAACATTCTCGGATTTAATGT
GTTGTAAATATATGATTAATCCTTTCCTCGTCTTTTCCTCCCTTGGTCGC
TTTGTTTTCTTTGCTGACACACACTGTGCAGTCATAAACAGTGAGGTTCA
CCATCTCGGATATAAAGCTACAGAGGCGTATGGAATCGTGTGGAAGGTAG
GGATTACTAGGTTTTGATGTGCTTTATCTTCGCTACTTGGAGATTCATGT
ATCTTCTCTGCGGATGGTCTCGATATGGGGGTAGTTTCCATCCATGTCAT
CGGTCATTATCCACCCCTTTATCCTTCCGCACATCCAACCGTTCGATCGT
GGGTATGAGCAAGATCCCAGTGATGATTTGGACAACAACAATGAGAGCAT
CGTTAGCTCGCCTAGTGGAAAACGACGAAACGCCCTGGAGTTTTAATGGG
AAGTAATTATCATTTTCTGGTGGTTCAGTTTCTTGTGCGTCGAGTCCGTG
CGAACTTTTTTTTGATGGCAAGTAATAGAATAATAGATGCCATGCTCCAT
GATTCACTACCCTCTCACCCCCCGCAATGATATTTCGGACTGTAAATGCC
AACTGACGAAAAATATCTAGCGCCGCAGTGGTCATGGGCAAACAGTATCA
CGTCTCGTGGGTGCTACATGTACTTCGATTGTCCCTATATTTTGTTCGAT
CACCCCTCCATTTAGTTTTTCATGTTGAAGTCGCTTTTGCCTCTTTTGAA
GAGGTTTGCGTCTCTCTTCGTGTACGAAAAGATCTCCCTTTTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTATGTGTGTTTTTTTTTCACATTTTCACACA
TCGCACGGATCATGATTCTTTTGGCCAATTACCTTCTATTAGAGTCCATG
AGCCGTACCTGATGTGCGGCCCCTTCGGCCCTGTTCCCGGCTTCGCTCCC
TAAAGCGCTGGACTCCGAGCACACGGAGTAGTAGCCCAAAAACTGTGGTT
GGACCTCTCTGACCCGCTGTCACGACTTTTTTTTTTTTTTGTCTGATGAG
TCCTCTTTTAGTGATTTGGACGAATCATTATCCGTGGGACGTGTGCTTCT
GTTGCTGTGTGAAAACAGTAGAGCTGCCAGAAGAGAAAATCATAGTAGAA
CAAGAAAATGCCATGTAGTTCAGTGGTAACGGTCAAATTCACTTCCTAGA
GCTGTCACAGCTTGGGCACAATTCGACTGCTTCCTCGAGAGCACGTCTCT
TTTTGTTTGTTTTTTTCGCTTTTTTCTACAATCCGCCCATGCAAGGCAAA
AGACATGAAGAATATGTTTGTTTTTGCCATTAGCAGTCTAGGCATAGTAC
ATAGACTAAATCCATGGTGTGTTTCTTCCTCTATTTGCATATTTTCCGAA
CGGCTATCCCTTCCCCTGCTTGCAAATGACGCAAAGGTTCGAGGATTCTG
TATCAACAAAACCAACGAAGACATCTTCGATAAGGTCAACGTGAGGGGCA
ACATCCGATTCTCCGACCTCCACGACAACTACTTCGGCATGTACGTTGAC
GGTTAAGGGATAGGGGCCAAGGGTTACACCGACGGCATCCCCGCTGTTGG
CGGGTGCAAGCTAAATATTTTTGGGGGGGGAGGGAGATGCTAACAGCTTA
ACGTTACACCCAGAAGATGTGCGCATGAAAGACGTTAAAAACTTGCCGAA
ATACGTGTTGGTACAGATGAAACAGAGGCCAAAAACGGGGGAAAGTAACA
GGAATAGGGTATGCGGAGATTCTTTTTTTAATTCTGAGTTATGACTTTCC
ACAAACTGGTTTAAGTTAAGAGGTTCGGGATAGTACTGTAAGGTACGCCT
GCGCCTGGTGAATCCCATAGCCAATGAATAGCACACAGGTACGAGTTTCT
GTGGATCTTCGAGTTGTTGTCAAGAGGAGCCGTATGTGAACGGAATAATG
ACTACCATTAATTCATCATACCTTGCAAAGTTCTACAATGGTCGACACCT
CAAGACCGTCTAGAATATTCACCCAGTGCATGCTTACTATCTCTGCCTCC
GTTTGCGCAATGGGGATAGATTGCGGCAGTAACCATACCCAACACGGCCA
TTTTTTTTCATTTCTTTTGTTTAATTTCTGTAGACGTATTTTTCAAGGAT
CAGTAGTGGGTAGTGAGCGAGGACGAGAGTGTTCTGTAGGAGTCGACATT
GTGACCCGTTAGCTCAAGCTGTAGATCGTTTTCGTGTTGTTTTGTGCTAT
GTGTAACCTCTGTGCTGTTGCCTGTGTTCATTTTGGGTGCCCTTATTTGT
ACAGCACGCTGGGATAATTCGAGCCTTTTGTTCGCTTGATGTATTATTGT
CATCTGCACTAATAGTTGTGTTTTGAGTCACCTTTGTTTCTTGCATTTTA
AATATTTTTTATTGCCCTAGTTGAGGTTGACGCTGTGTCGTTGGCTCCTA
GTTTCATTCACTTTCACTGGCGACGTTTTTTTTTTTTTCTTGTTGTCGTG
CAGGTACTCCTACGGACACGCCGATGGCCTATGGGAGTACAATCTCATGC
GCGACAACCTCGAGTGAGTGCCGCTGCCCCCAAGTGCAGTAAAATGGTCG
CGTCGAACCTCGTAGTTGAGACCGGACCCAATTGGGTATGGGGATAGTCT
TGAGGGTGAAATTCATGTTGCCATGCTGCAGTAATCCATTAACTTGTGCA
GTAGACTACCTTGCTCAAGTTTATAGAATCCTTAAGGGACCTATGACTCT
TACCGGGGGCCTGAAAAATTCCCCATCACTCCACGTTCCCTTGCAAACGC
TATTAGCGTCGGTGGTCCACCCAAAGAAGAGAGAGACACCGTAACTCCCA
CCGCGTACTTGATTGGGAAGTCGTTATAGTTTATACATTTCCTATTCGCA
ATCATGAGAAAACGAAAGGCCGACGTGTATTTCCTGAAGGCGTCACAGAG
GTGAAGAGGCCAGGAGGCCGGGTCCACGCAAACAATAAAAGAGAGGTGGA
GCTCGAGGTACTGTAACGAGTGTCTGGCATCACTAGCGACATGACGAGGG
TCACAATCAAGATGATCGGGCGGGGTATGGACTGTTACTGTTTGGCGTTG
GGAGAGATTGGAAGAGAGAAAAAAAAACAGTTAGAGAAGCGTTTTTTTCT
CGAGGAATATAGTAGTTCTATTCTGCAGGTTTTTGATGGAGGGCGGGTAT
CGAGATACGTGAGGATATATGAATATGGAGTGCGCATAGCCACGTTGCCA
GAGTTGAACAAGAAGACGTAGACAAGCCATGAGGGACAGGGAGGTGGAGA
TGACCAGGAGCGGCGAGGAGTTAAGCACACCAAAGAAAATCGAGATAGAT
AAAGGAGCTTGAAACAGCTCAAGAAGATGAAGTGGAAGGTCACCACAAAC
TTGAAACGCAGCCAGGAGAAACGGAAGGTTGAAAGTAGGGTCATAAAACA
TGTGTGGATTTTTGTGAAATAACCCTTGAACAGCTACAAATAGAGGAACG
TGTAGGAAAGTGTGACTTGATGTATTGAGGATGCAGAAGATTTAGCTACG
GAAAGATGGAGAGGTGAAAAGTGAGATCGGGAATCACTGCTGGATAGGAA
AGGAACATACGGGTATAGAACCCAAGAAGAGAAGGTCGGGAGGAGTCGTA
TTTTTTTCGTCACGAGAGACGTATTTGAGATCGTTGAAGAAGCGGTAGTA
GAAACCAAGCTTGAGGAAACAATCTGACTCCGGAATTCGGGATAGCGGGG
CGAACAAAGCGCACGAGAGCTTGGCCAAATATGGTGTGACATACAGAACG
AGATGAAACCTGCGTGTTGGGGAAGCTCCTCACGATAGACAAGTTGTCGG
ACGGTACGAAGAGGAGATTGGTTGTGATAATGGAAAGATGATGGTTGATT
GTTGCTTTGTTGCAGAGTAAAGAGTTGATGTCAATAAATAGCAGACATAC
GGCCAAAACATTGAAGTACACCAGGCAGAGGGCAGCTCAAAATGAAAACT
GAGTTCCTGACTACCGTATATCCTGATCGAGACGAGGAATATCAAGCCAG
ACTCGCTTGTGGATTCGGTATCAGGACGGTGGATTTTGGAGTACAGTAAA
TGTGGCGGGTCATGAAAGGAAAGGTAAAAAAGAGTAGGAGAAGCGGTACA
CGGAAGGCTGGTCAGTAGCGGAAAGGGCAAGAGGGAAATACTAGAGGGGC
ACTTACGAAGACTCGGGGTGCCTTCGGAGGAAGCTACGTTTGAGAGGCGT
TCAAGGAAGAGGTGGATAATCGAGTCAAATTGAAAAGGATGCATCAAAGG
AGTCCAAAGGGACTTTTTCGCCGACAAGATTGAGAAAAGCGTAACCAAAT
TCCCTTCTAAAGTGAAAAAAACAGCAGGAGCAGGAGGGATCGTAAACGAA
ATCATGATGGAGTTGGTGGTGTTGGGATGAAAACGTTTATGGTACTACTG
TACACTGGGGTATCGGAGATGTACATTTTTATCTTGTCATATGAAAGCCG
AAATGTAGCGACAAAATTGAAATTTTCAGATTTGCAAAAATGATTGGCGA
AAACCCAGGATTATCCGTTTTTTTTTAGTATTTTATTGTTCTTTTTGGAT
GACTTGAAAATCTGAATTTTTCCATTTTGAAAATATATGTGTGTATATAT
ATATATCCCGTTCACTAGTAGTGACTCCAAGGAACGTGTGGAAGTACACC
AAATGCTGGATGAAGAGAGATGGTTGAAGAGATACACAGACACGGACTGT
TGGAAGCAAACACAAAACTGAAGGTCAAATTCAGGACGGGGGGTCTGACC
TCGAGGAACGTGAGGAACGGTTCAGGAGAGTAGACGAGGATGATGAGATG
TCCAAGGAGACAGCGGTAGTTTGTGTAAGGACCGAATTCACATGGTGGGA
GAGTACTCGCTGTATGAAGAGGATATTCATAAATTTGGAATTTTGACTGA
CGTGATGGAAGGGTGTTCAAATCCAGGGATTGCGCAAACAAGGCCATATC
GGTGATAGGACATGAAATTTTACCTGTATATGCGAGTTTTTTTTTTTGTT
GACTTTTTAACCCACCGAAGGCTGAGGCAAAAACCTTTACCGATCCTTCC
ATACTGGAGACTTTTGCCAAAGTAAATGCGAGGTTTGAGGTAGATAGGAA
AAGGTACAACATTTTTTGCCACACTTGGTAACGTAGGAAAGAGTGATAGT
TGATCGGAAATTGCTCTGAACAAAGTTACGTCTGTCTCCTCGAGGACACG
TGGTGAATGGAAAACGTGAGTACGCCCCCCTGGCCCCGTCCCCTTAGTGA
ATTATTTTTCCTAATGATTGTGTACATCTTCCCTACTCCCACTGTTCTGC
TATGTTGTGTTCTTGTGTTTGTCTATCGTTCTCAGGTACGGGTTTGACCC
GCACGACGACTCGGACAACCTCCGAATCCACAACAACATCGTGTACGGCA
ACGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5249:203..12957-

>mRNA_H-paniculata_contig5249.12618.1 ID=mRNA_H-paniculata_contig5249.12618.1|Name=mRNA_H-paniculata_contig5249.12618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig5249:203..12957- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTGATGCAGGAGACCCTGTGGCTACTGTACGCTACAATATCGAGTC
TGACAGGCTTTACCTCGAGGGGTCAGGGTGTATCACGCCTCGGGATATTT
TTGCTGCGAAGAATTTGTCTGCCAGCATTCCCATAAAGGCCATCACAGAG
GATGGCGAAGAATCGGATGAGGAAACGGGGCATGTGATGCAGGAGACCCT
GTGGCTACTGTACGCTACAATATCGAGTCTGACAGGCTTTACCTCGAGGG
GTCAGGGTGTATCACGCCTCGGGATATTTTTGCTGCGAAGAATTTGTCTG
CCAGCATTCCCATAAAGGCCATCACAGAGGATGGCGAAGAATCGGATGAG
GAAACGGGGTTCTGGCTGTTCACTTCTGACGTGTATGTTTACACAGGTGT
CAAGCTTGAGCTTCATAAGGATTCGGGGACAACGGTTCTGGCTGTTCACT
TCTGACGTGTATGTTTACACAGGTGTCAAGCTTGAGCTTCATAAGGATTC
GGGGACAACGGGATTGCGGCTAAAGTCAGATGACGGGCCGATAGAACTCC
GCGCGCACGGTGGCTGGTTATCCATGCTCAACACCGAGGGATTGCGGCTA
AAGTCAGATGACGGGCCGATAGAACTCCGCGCGCACGGTGGCTGGTTATC
CATGCTCAACACCGAGGTGTCCGCTTGGAACGAAAAGGACGGTGAGCACG
AATCCAACACAACGGGAGGACGTTCATACATCACCGCGATCAGCGAGAAG
CTCGAATCACCCCCAGAGATGTGCAGTGGAAGGGCAAAGAATAATCTTGG
CGAAGCGCGAATGGACAGTGTCCGCTTGGAACGAAAAGGACGGTGAGCAC
GAATCCAACACAACGGGAGGACGTTCATACATCACCGCGATCAGCGAGAA
GCTCGAATCACCCCCAGAGATGTGCAGTGGAAGGGCAAAGAATAATCTTG
GCGAAGCGCGAATGGACATCATAAACAGTGAGGTTCACCATCTCGGATAT
AAAGCTACAGAGGCGTATGGAATCGTGTGGAAGTCATAAACAGTGAGGTT
CACCATCTCGGATATAAAGCTACAGAGGCGTATGGAATCGTGTGGAAGGT
TCGAGGATTCTGTATCAACAAAACCAACGAAGACATCTTCGATAAGGTCA
ACGTGAGGGGCAACATCCGATTCTCCGACCTCCACGACAACTACTTCGGC
ATGTTCGAGGATTCTGTATCAACAAAACCAACGAAGACATCTTCGATAAG
GTCAACGTGAGGGGCAACATCCGATTCTCCGACCTCCACGACAACTACTT
CGGCATGTACTCCTACGGACACGCCGATGGCCTATGGGAGTACAATCTCA
TGCGCGACAACCTCGAGTACTCCTACGGACACGCCGATGGCCTATGGGAG
TACAATCTCATGCGCGACAACCTCGAGTACGGGTTTGACCCGCACGACGA
CTCGGACAACCTCCGAATCCACAACAACATCGTGTACGGCAACGGTGTAC
GGGTTTGACCCGCACGACGACTCGGACAACCTCCGAATCCACAACAACAT
CGTGTACGGCAACGGT
back to top