mRNA_H-paniculata_contig52429.12613.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52429.12613.1
Unique NamemRNA_H-paniculata_contig52429.12613.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52429.12613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52429contigH-paniculata_contig52429:593..1067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size475
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.4867842-CDS-H-paniculata_contig52429:592..9911622930523.4867842-CDS-H-paniculata_contig52429:592..991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52429 593..991 +
1691481330.8663256-CDS-H-paniculata_contig52429:592..9911691481330.8663256-CDS-H-paniculata_contig52429:592..991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52429 593..991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930523.506594-UTR-H-paniculata_contig52429:991..10671622930523.506594-UTR-H-paniculata_contig52429:991..1067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52429 992..1067 +
1691481330.8757145-UTR-H-paniculata_contig52429:991..10671691481330.8757145-UTR-H-paniculata_contig52429:991..1067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52429 992..1067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52429.12613.1prot_H-paniculata_contig52429.12613.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52429 593..991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52429.12613.1

>prot_H-paniculata_contig52429.12613.1 ID=prot_H-paniculata_contig52429.12613.1|Name=mRNA_H-paniculata_contig52429.12613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
PLRVLILVRGVHPRESAERLPPSLLIVFLVSGAGGELTLELCRVPLAPCV
PPLAVCSNDNPSVHQLYYWLYWVYEGLSSAICACLHISLHSRKPSSPCFP
RRHCWLYYWFQESCFPSAPYWLCLLFPCQAAT*
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mRNA from alignment at H-paniculata_contig52429:593..1067+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52429.12613.1 ID=mRNA_H-paniculata_contig52429.12613.1|Name=mRNA_H-paniculata_contig52429.12613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=475bp|location=Sequence derived from alignment at H-paniculata_contig52429:593..1067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTCAGAGTATTGATACTCGTCCGGGGGGTGCATCCAAGAGAGTCTGC
TGAACGCCTCCCCCCGTCCTTGCTGATTGTATTTTTGGTTTCTGGCGCGG
GCGGCGAATTAACCCTTGAACTTTGCCGCGTACCTTTAGCGCCATGTGTT
CCACCACTGGCGGTATGTTCTAATGATAACCCCTCCGTACACCAACTGTA
CTACTGGCTTTATTGGGTGTACGAAGGACTGTCTTCCGCAATCTGCGCCT
GTCTTCATATTTCGTTGCATTCAAGAAAGCCTTCCTCGCCGTGTTTCCCT
CGGCGTCACTGTTGGCTGTATTACTGGTTTCAAGAGAGTTGTTTCCCCTC
CGCTCCCTACTGGCTCTGTTTATTGTTTCCATGTCAGGCGGCAACTTGAC
TGTCGAACTTTGCCATCTACTTTACTCGCATTGTACGCAACTCTGGTATA
AACAGTCCGCTGTACTGCAGTGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig52429:593..1067+

>mRNA_H-paniculata_contig52429.12613.1 ID=mRNA_H-paniculata_contig52429.12613.1|Name=mRNA_H-paniculata_contig52429.12613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig52429:593..1067+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTCAGAGTATTGATACTCGTCCGGGGGGTGCATCCAAGAGAGTCTGC
TGAACGCCTCCCCCCGTCCTTGCTGATTGTATTTTTGGTTTCTGGCGCGG
GCGGCGAATTAACCCTTGAACTTTGCCGCGTACCTTTAGCGCCATGTGTT
CCACCACTGGCGGTATGTTCTAATGATAACCCCTCCGTACACCAACTGTA
CTACTGGCTTTATTGGGTGTACGAAGGACTGTCTTCCGCAATCTGCGCCT
GTCTTCATATTTCGTTGCATTCAAGAAAGCCTTCCTCGCCGTGTTTCCCT
CGGCGTCACTGTTGGCTGTATTACTGGTTTCAAGAGAGTTGTTTCCCCTC
CGCTCCCTACTGGCTCTGTTTATTGTTTCCATGTCAGGCGGCAACTTGAC
CACTCAGAGTATTGATACTCGTCCGGGGGGTGCATCCAAGAGAGTCTGCT
GAACGCCTCCCCCCGTCCTTGCTGATTGTATTTTTGGTTTCTGGCGCGGG
CGGCGAATTAACCCTTGAACTTTGCCGCGTACCTTTAGCGCCATGTGTTC
CACCACTGGCGGTATGTTCTAATGATAACCCCTCCGTACACCAACTGTAC
TACTGGCTTTATTGGGTGTACGAAGGACTGTCTTCCGCAATCTGCGCCTG
TCTTCATATTTCGTTGCATTCAAGAAAGCCTTCCTCGCCGTGTTTCCCTC
GGCGTCACTGTTGGCTGTATTACTGGTTTCAAGAGAGTTGTTTCCCCTCC
GCTCCCTACTGGCTCTGTTTATTGTTTCCATGTCAGGCGGCAACTTGA
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