mRNA_H-paniculata_contig11992.1261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO) HSP 1 Score: 183 bits (465), Expect = 1.850e-51 Identity = 104/285 (36.49%), Postives = 162/285 (56.84%), Query Frame = 1
Query: 1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
I +WV+ +K D ++KARLVVQG+ Q+ G+D FAPV + + R +L+ A +D + L + AFLNG + E V+ A+VGSL+ L+ CTR DI +V AR+M+ P H A K + RYL G PD+ IT+ P L + +A + RSTTG F F G + ++S LQ A STTEAE IA AT K+G++L + ++L L L + + +D++ +L L N S+ SKHI + ++ + R+++ +++ + +AD LT+
Sbjct: 98 IPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAGRQDLDLHQLDIKTAFLNGTIDEEVYTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGLWLRKLFQDLSLDLHTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTK 382
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO) HSP 1 Score: 185 bits (470), Expect = 1.680e-49 Identity = 105/285 (36.84%), Postives = 163/285 (57.19%), Query Frame = 1
Query: 1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
I +WV+ +K D ++KARLVVQG+ Q+ G+D FAPV + + R +L+ A A+D + L + AFLNG + E V+ A+VGSL+ L+ CTR DI +V AR+M+ P H A K + RYL G PD+ IT+ P L + +A + RSTTG F F G + ++S LQ A STTEAE IA AT K+G++L + ++L L L + + +D++ +L L N S+ SKHI + ++ + R+++ +++ + +AD LT+
Sbjct: 1784 IPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGMWLRKLFQDLSLDLHTVAICADSQTALKLLKNPIVSNRSKHIDVVHHFARERVARNEVTFEYISTESMVADALTK 2068
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 182 bits (463), Expect = 8.160e-49 Identity = 108/283 (38.16%), Postives = 157/283 (55.48%), Query Frame = 1
Query: 1 IGTRWVFNVKADRKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITY---SRCEPKLLGYSNASYCT----RSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGL-QLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
IGTRWV+ VK D +FKAR+VVQGW+Q+HGVDC +TF PV R+ S+RLLLA+A AR MS+P + HL +K IFRYL+ P++ + Y SR E L YS+ASY + +S TG+M F A L++FSS +Q+I A S++E E + + AK G+Y + ELG QL ++ +D R +L L +N +S+ S+HI++R+ AL+ W+ ++ +DHVPS+ L+DILT+
Sbjct: 638 IGTRWVYRVKTDGRFKARVVVQGWAQQHGVDCLTTFVPVCRIGSQRLLLAIA-------------------------------------------------------ARRMSSPREGHLANIKSIFRYLRKRPNLSLVYRKDSRFE--LPCYSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2Z6PCB3_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PCB3_TRISU) HSP 1 Score: 176 bits (446), Expect = 2.490e-46 Identity = 104/292 (35.62%), Postives = 166/292 (56.85%), Query Frame = 1
Query: 1 IGTRWVFNVKADRK-----FKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPA--MVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDV----PITYSRCEPKLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGL-QLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
I +WV+ +K + K KARLV +G+ QK G+D G FAPV R+E+ RL+ +A DW ++ + V AFLNG ++E VF Q P ++GSL L TR D+ +SV +R+M P HL+AVKRI RY++G D P + E KL+GY+++++C +ST G +F+F + + S + + A S+ EAE IA + Q I+L + E+ L + + ++ DN +++LA N SKHI +RF L++ + L +++ S +Q+AD+ T+
Sbjct: 881 IDVKWVYKLKMNSKGEVTRHKARLVARGFLQKEGIDYGEVFAPVTRMETIRLVTVIANINDWPMYQMDVKSAFLNGPIEEEVFVTQPPGYELIGSLRYLCN-TRPDLAYSVGIVSRFMDKPKSSHLIAVKRILRYVKGTIDYGVFFPANDRKNECKLMGYTDSNWCGDVEDRKSTAGYIFYFGEAPISWCSKKEPVVALSSCEAEYIAASLRTCQAIWLRNLIEEISLVKCNTVTLKVDNVSAINLAKNPIAHGRSKHIEMRFHYLREQVNNENLTLEYCKSDEQVADLFTK 1171
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A438GEX0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GEX0_VITVI) HSP 1 Score: 170 bits (431), Expect = 2.420e-44 Identity = 103/289 (35.64%), Postives = 158/289 (54.67%), Query Frame = 1
Query: 1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEP-KLLGYSNASY--CTRS---TTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLT---SCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
IG +WVF K D ++KARLV +G++QK G+D TF+PV + +S R++LAL D + V AFLNGKL+E V+ KQ S CTR DI F+V RY S P H A K++ RYLQG D + Y R +++GYS++ + C S T+G +F A G + + S Q +TATST EAE I+ G++L L + + + DN ++ +A N+ S SKHI I++ A+++ ++ +++I+H+ + +AD LT+
Sbjct: 745 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQTDVKTAFLNGKLEEEVYMKQPEGFPSSDGEQLVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDSDFAGCVDSRISTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 1033
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A7H4LHQ9_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LHQ9_WHEAT) HSP 1 Score: 148 bits (374), Expect = 5.120e-39 Identity = 102/289 (35.29%), Postives = 153/289 (52.94%), Query Frame = 1
Query: 1 IGTRWVFNVKADR-----KFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPK---LLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICREL-GLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
IG +WVF VK D K KARLV +G+ Q+ GVD FAPV R+ES RL L+ + +V + ++VGSL L TR D+ +SV +RYM P +HL VK+I RY++G Y+R + L+GYS++ +ST G +F L+ + S QK+ A S+ EAE IA AT A QG++L + +L Q ++R DN+ ++ L N + + SKHI IR+ +++ + ++ +D+V + DQLADILT+
Sbjct: 56 IGLKWVFKVKKDSQGAVVKHKARLVAKGYVQQQGVDFEEVFAPVARMESARLKLSKRSKAP-------------------TVDSTEYRSIVGSLRYLVN-TRPDLAYSVGIVSRYMENPTTEHLTVVKQILRYVKGTLKYGCKYTRKKEDKSLLVGYSDSDLAGDVDDRKSTWGVAYFLGENLITWLSQKQKVVALSSCEAEYIAAATAACQGVWLSRLLADLTNQQPEQVKLRVDNKSTISLCKNPVHHNRSKHIDIRYHYIRECVEEGKVEVDYVSTKDQLADILTK 324
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 150 bits (379), Expect = 2.100e-37 Identity = 100/290 (34.48%), Postives = 146/290 (50.34%), Query Frame = 1
Query: 70 WSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKE-----------------------------SVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYCT-----RSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSD----NRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
W+Q G D G TFAPV RL+S R+LLA+A KD V L V AFL ++E + F + A++GS+I L Q TR+DI + Q AR MS P + H+ A K + RYL G D ITY R L S+A++ +S + + + V F LQ +TA ST EAEL+A A K+ I+ + +ELG E RS N +LH+ N +S +KH+A+RF +++ ++ ++ I ++P+ D LADI T+
Sbjct: 385 WNQVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEEDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELSAIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGF---GSEFRSAPLYINTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTK 671
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A0J7K788_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K788_LASNI) HSP 1 Score: 142 bits (357), Expect = 8.650e-37 Identity = 87/285 (30.53%), Postives = 149/285 (52.28%), Query Frame = 1
Query: 1 IGTRWVFNVKADRK-----FKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKDWTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYCT-----RSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
+ ++W+F +K D K +KARLV +G +Q+HG+D TF+PV R + RLL+++A D + L V AFLNG L+E VF +Q + + H +A KR+ RYL+G D +T+++ ++G+ +A + RS TG F GLV +S QK ATS+ EAE +AL+ ++ I+L + ++L + EV +D++ + +A S +KHI I+ ++D + + +L + ++P+ + AD+LT+
Sbjct: 38 VNSKWIFKIKKDEKGNTTRYKARLVAKGCTQRHGIDYFETFSPVVRTSTIRLLMSVAIEMDLKIRHLDVATAFLNGDLEEEVFMRQPQGFI-----------------------VKGKENKSHWLAAKRVLRYLKGTKDFCLTFNKTGNNIVGFVDADWGMDINDRRSYTGYAFKVGGGLVSWSCRKQKTVATSSAEAEYMALSDGCREAIFLQNLLQDLFGKYFPVEVYNDSQFAQKMATYHMSHSRTKHIDIKHHYVRDVVEKKRLNLKYLPTENMCADVLTK 299
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.510e-36 Identity = 79/198 (39.90%), Postives = 123/198 (62.12%), Query Frame = 1
Query: 253 MVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSNASYC-------TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
+VGSL+ LT TR++I ++V+ R M+ P QH+V KR+ RYL+G PD+P+ + R + L Y +AS+ RS+TG +F A G+V +S LQK+TA S+ AE+IA+AT A++ IYL G+ ELG + + SD+ G++ A NS + SK I+ R+ L+ + + +++ V S +QLADILT+
Sbjct: 488 IVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTK 685
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Match: A0A2N9G102_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G102_FAGSY) HSP 1 Score: 141 bits (356), Expect = 2.650e-34 Identity = 92/295 (31.19%), Postives = 152/295 (51.53%), Query Frame = 1
Query: 1 IGTRWVFNVKAD-----RKFKARLVVQGWSQKHGVDCGSTFAPVYRLESRRLLLALATAKD----WTVFALYVPVAFLNGKLKESVFCKQAPAMVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDVPITYSRCEP-KLLGYSNASYC-----TRSTTGTMFFFANGLVHFSS*LQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRS-----DNRGSLHLAANSNYSSHSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADILTR 825
IG +WVF K D ++KARLV +G++QK G++ TF+P+ + +S R++LAL D W + + + + K CTR DI F+V RY S P H A K++ RYLQG D + Y R + +++GYS++ + +ST+G +F A+G+V + S Q +TATST EAE ++ G++L GL++ R +N ++ +A N+ S SKHI I++ A+++ I+ +++I+HV + +AD LT+
Sbjct: 1209 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGINYTETFSPISKKDSLRIILALVAHFDLELIWVRHLMSLALRSIETDFKV-------------------CTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKSTSGYIFLMASGVVSWRSAKQTLTATSTMEAEFVSCFEATSHGVWLKSFIS--GLRIMDSISRPLRMYCNNSAAVFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTELMIADPLTK 1482 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11992.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11992.1261.1 >prot_H-paniculata_contig11992.1261.1 ID=prot_H-paniculata_contig11992.1261.1|Name=mRNA_H-paniculata_contig11992.1261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MVGSLISLTQCTRFDICFSVIQAARYMSAPIQQHLVAVKRIFRYLQGHPDback to top mRNA from alignment at H-paniculata_contig11992:3057..4391- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11992.1261.1 ID=mRNA_H-paniculata_contig11992.1261.1|Name=mRNA_H-paniculata_contig11992.1261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-paniculata_contig11992:3057..4391- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11992:3057..4391- >mRNA_H-paniculata_contig11992.1261.1 ID=mRNA_H-paniculata_contig11992.1261.1|Name=mRNA_H-paniculata_contig11992.1261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig11992:3057..4391- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |