mRNA_H-paniculata_contig52390.12605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52390.12605.1
Unique NamemRNA_H-paniculata_contig52390.12605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52390.12605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52390contigH-paniculata_contig52390:557..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size442
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930522.4949484-CDS-H-paniculata_contig52390:556..9971622930522.4949484-CDS-H-paniculata_contig52390:556..997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52390 557..997 +
1691481330.4030702-CDS-H-paniculata_contig52390:556..9971691481330.4030702-CDS-H-paniculata_contig52390:556..997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52390 557..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52390.12605.1prot_H-paniculata_contig52390.12605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52390 557..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52390.12605.1

>prot_H-paniculata_contig52390.12605.1 ID=prot_H-paniculata_contig52390.12605.1|Name=mRNA_H-paniculata_contig52390.12605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
TYTNHGARTQCKAKRKEIDCRGCYHCPFAAFGIFLFLCLLRLVQPVIGKS
PRISLDIGFSGGNVHFFSGHYYFVHQQVTLRPRAEGRKVCTALLGCGVLS
YPHKRGCSKLDPPTKYWLVWRSFIYVWSFASTEDAGGGWHVPSFWR*
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mRNA from alignment at H-paniculata_contig52390:557..997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52390.12605.1 ID=mRNA_H-paniculata_contig52390.12605.1|Name=mRNA_H-paniculata_contig52390.12605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig52390:557..997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATACACAAATCACGGTGCTCGTACGCAGTGCAAAGCGAAGAGAAAAGA
AATCGATTGTAGGGGGTGCTATCATTGTCCATTCGCTGCGTTCGGGATAT
TCCTTTTCCTGTGTTTGCTTCGCCTTGTCCAGCCTGTTATTGGCAAGTCG
CCCCGAATTTCTCTTGACATTGGTTTTTCGGGAGGAAATGTTCATTTTTT
TAGTGGACATTATTATTTTGTTCATCAGCAAGTTACCCTGCGCCCCCGGG
CTGAAGGACGTAAGGTGTGTACGGCCCTGCTTGGTTGCGGCGTTCTTTCA
TATCCACACAAGCGAGGATGTTCGAAGCTTGATCCGCCGACGAAGTACTG
GTTAGTGTGGCGGTCGTTTATATACGTTTGGAGTTTTGCGAGCACGGAAG
ATGCTGGTGGTGGATGGCATGTCCCCTCTTTTTGGAGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig52390:557..997+

>mRNA_H-paniculata_contig52390.12605.1 ID=mRNA_H-paniculata_contig52390.12605.1|Name=mRNA_H-paniculata_contig52390.12605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig52390:557..997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATACACAAATCACGGTGCTCGTACGCAGTGCAAAGCGAAGAGAAAAGA
AATCGATTGTAGGGGGTGCTATCATTGTCCATTCGCTGCGTTCGGGATAT
TCCTTTTCCTGTGTTTGCTTCGCCTTGTCCAGCCTGTTATTGGCAAGTCG
CCCCGAATTTCTCTTGACATTGGTTTTTCGGGAGGAAATGTTCATTTTTT
TAGTGGACATTATTATTTTGTTCATCAGCAAGTTACCCTGCGCCCCCGGG
CTGAAGGACGTAAGGTGTGTACGGCCCTGCTTGGTTGCGGCGTTCTTTCA
TATCCACACAAGCGAGGATGTTCGAAGCTTGATCCGCCGACGAAGTACTG
GTTAGTGTGGCGGTCGTTTATATACGTTTGGAGTTTTGCGAGCACGGAAG
ATGCTGGTGGTGGATGGCATGTCCCCTCTTTTTGGAGATAGACATACACA
AATCACGGTGCTCGTACGCAGTGCAAAGCGAAGAGAAAAGAAATCGATTG
TAGGGGGTGCTATCATTGTCCATTCGCTGCGTTCGGGATATTCCTTTTCC
TGTGTTTGCTTCGCCTTGTCCAGCCTGTTATTGGCAAGTCGCCCCGAATT
TCTCTTGACATTGGTTTTTCGGGAGGAAATGTTCATTTTTTTAGTGGACA
TTATTATTTTGTTCATCAGCAAGTTACCCTGCGCCCCCGGGCTGAAGGAC
GTAAGGTGTGTACGGCCCTGCTTGGTTGCGGCGTTCTTTCATATCCACAC
AAGCGAGGATGTTCGAAGCTTGATCCGCCGACGAAGTACTGGTTAGTGTG
GCGGTCGTTTATATACGTTTGGAGTTTTGCGAGCACGGAAGATGCTGGTG
GTGGATGGCATGTCCCCTCTTTTTGGAGATAG
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