mRNA_H-paniculata_contig5237.12601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5237.12601.1
Unique NamemRNA_H-paniculata_contig5237.12601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: D7FZB6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.370e-119
Identity = 170/200 (85.00%), Postives = 184/200 (92.00%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQAQNAPKAQAIVGR 760
            MACCLICVKDDPVPGSK+D +Y NPN+FQIG+MEAPCKN  W CFGCLC CCAQFIVRKRALDGNL+NYLCCQGY+PMCCM AGDCGERSCPCFCLC+E   C+SCAVS+SRMY+MDKFSV PDPWDNRIIRFNNFLQLLSCICNIA+ICIEEIRELARIID IA+L YM+TVGCMTGQMI+EMDYQA  APKAQAI GR
Sbjct:    1 MACCLICVKDDPVPGSKLDPFYGNPNQFQIGLMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR 200
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: D7FZB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 6.260e-102
Identity = 144/177 (81.36%), Postives = 159/177 (89.83%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMT 691
            MACCLICV D+PVPGSK+D YY+NPNKFQIGMMEAPCKN  WC FGCLCMCCAQFIVRKRALDGNL NY+CCQGYFPMCC + GDCGER CPCFCLCME   C+SCAVS+SRMY+MDKF V PDPWDNRIIRFNN LQ+LSCIC+IA+IC+ E+RELARIID IA+L YM+TVGCMT
Sbjct:    1 MACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCKNCPWCTFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCMT 177
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: D7FZB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 1.440e-97
Identity = 143/203 (70.44%), Postives = 165/203 (81.28%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQAQNAPKAQAIVGR*VG 769
            MACCLICVKDDPVPGSK+D YY NPN+FQIGMMEAPCK   WC +G LC+ CAQF VRKRAL G LD+Y+CCQGYFP  C + GDCGER CPCFCLCME  +C SCAVS+SRMY+MDKF V PDPWDNRIIRFNN LQLLSCIC+ A+I +++ RELAR+ D +A L Y+S VGCMTGQM+ EM+YQ   +P+AQ I GR  G
Sbjct:    1 MACCLICVKDDPVPGSKLDAYYGNPNQFQIGMMEAPCKTFLWCAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFPTHCCEPGDCGERRCPCFCLCMESFLCPSCAVSSSRMYLMDKFEVQPDPWDNRIIRFNNCLQLLSCICHCAAIFVQDFRELARLTDVLANLVYLSAVGCMTGQMMAEMEYQEGTSPEAQCITGREYG 203
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A835YWZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA)

HSP 1 Score: 296 bits (758), Expect = 3.580e-91
Identity = 137/199 (68.84%), Postives = 162/199 (81.41%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFP-MCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQAQNAPKAQAIV 754
            MACCLIC  D+PV GSK++ +Y N  +FQIGMMEAPCK T  CC+G LC CCAQ+ VRKRALDGNLDNY+CCQGYFP  CCM+ G CGE+S P  CLC+E   C SCAVS+SRM+IMDK+ + PDPWDNRIIRFNN LQLLSCICN  +IC+EE+RE ARI+D IAE+ + +TVGCMTGQM+ E+DYQ   APKA+AIV
Sbjct:    1 MACCLICFSDEPVRGSKLEQFYGNNQQFQIGMMEAPCKATLCCCYGSLCSCCAQYTVRKRALDGNLDNYICCQGYFPGCCCMKPGHCGEKSSPACCLCLESFCCLSCAVSSSRMFIMDKYRLLPDPWDNRIIRFNNALQLLSCICNCLAICVEELREFARILDLIAEIVFYTTVGCMTGQMMHELDYQQNMAPKAEAIV 199
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A2R5GIB4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIB4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 5.870e-55
Identity = 97/191 (50.79%), Postives = 130/191 (68.06%), Query Frame = 2 
Query:  164 ACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEI-----RELARIIDCIAELTYMSTVGCMTGQMIFEMDYQ 721
            ACC  C  DDPV     D    + N++++ M +AP + T WCC+G  C  CA + +R RAL  N++NY CCQGY   CC+  G+ GE +CP FCLCMEV  C SC++SA+R  IMD++S+  DP DNRIIRFNNF+Q+LSC+ N+ SICIEE+     RE A+I+D IA++ YM T GCM  QM  EM+++
Sbjct:    6 ACCF-CFPDDPVED---DPRIQHANRWKVLMKDAPTEETLWCCYGAFCPVCAAYQLRTRALGYNMNNYRCCQGYLQFCCISPGNMGEENCPEFCLCMEVCCCLSCSISATRFMIMDQYSIVSDPCDNRIIRFNNFMQILSCVLNLLSICIEELYVRIFREAAQIVDLIAKIVYMVTFGCMAAQMKSEMEFR 192
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A7S2UXX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.920e-54
Identity = 97/188 (51.60%), Postives = 125/188 (66.49%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMC-CAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQ 721
            M CC IC  D P+ G K   Y    N FQ+ M + PC+    CC G    C CAQ++VRK+ALDG++ NY CCQGY+   C +AG CGE SCP  CLC+E   C+SCAVS++RM +MD + +  DPWD RIIRFNN +Q+LSCIC+IA+I    +R+ A +ID IA+  Y S   CMT Q+ FE+DYQ
Sbjct:    1 MYCC-ICFDDGPIEGDK---YGQFSNTFQLSMADVPCQQPA-CCLGAFFCCPCAQYMVRKKALDGDMTNYKCCQGYYDCLCFKAGHCGEESCPDVCLCLEAVFCNSCAVSSTRMLVMDTYFLQSDPWDRRIIRFNNCMQMLSCICHIAAIIDPSLRDCAVLIDRIADCVYYSVQACMTAQVNFELDYQ 183
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A7S2UXW4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW4_9STRA)

HSP 1 Score: 197 bits (500), Expect = 6.310e-54
Identity = 92/189 (48.68%), Postives = 123/189 (65.08%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCL-CMCCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQA 724
            M CCL+C  DDP+ G K   Y  NPN FQ+ + +A C     CC G   C CCAQ+ +RK+AL+ ++ NY CCQGY+   C +AG+ GE SCP  CLC+E   C SCAVS++RM +MD + ++ DPWD RIIRFNNF Q+LSC+C I ++    +++ A +I  IAE  Y S   CMT Q+  E+ YQA
Sbjct:    1 MVCCLLCFSDDPIEGDK---YGQNPNTFQVSLKDAACAEPA-CCIGTFFCPCCAQYYIRKKALNDDMSNYTCCQGYYDCACFKAGNLGESSCPELCLCLEAYCCESCAVSSTRMLVMDTYMLASDPWDRRIIRFNNFCQVLSCVCQILAMVEPSLQDCAELIRLIAECVYYSVQACMTSQVHHELKYQA 185
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A484EEY5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC)

HSP 1 Score: 191 bits (485), Expect = 2.650e-52
Identity = 91/183 (49.73%), Postives = 126/183 (68.85%), Query Frame = 2 
Query:  170 CLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFP--MCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEM 712
            C++C   DPV     D   +NP  FQ+GMM AP  +   C   CLC CCAQ ++R++AL+ ++ NY CCQGY    + C ++G CGE SCP FCLC+E   C+ CAVSA+RM +MD++ + PD WDNRIIR NN +QL+SC+C++ SICI E+ +LA ++ CIA+ TY +T GCMT Q+  E+
Sbjct:    2 CILC-SGDPVED---DVRKNNPGSFQVGMMHAPGADPLCCMSACLCPCCAQIVIRRKALNYDMSNYTCCQGYMDGLVPCARSGQCGESSCPNFCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQVNVEL 180
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A7S2V0P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0P2_9STRA)

HSP 1 Score: 191 bits (484), Expect = 9.050e-52
Identity = 90/187 (48.13%), Postives = 121/187 (64.71%), Query Frame = 2 
Query:  161 MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQ 721
            MACCL C  DDP+ G K  G+Y N   FQ+ M +A C+    C   C C  CAQ+I+R++AL+G++ NY CCQGY+   C ++G CGE SCP  CLC E T C+SCAVS++R  +MD + +  DP D R+IR NN +Q L+C C+I +IC  E R+ A+ +D  A   Y S   CMT Q+ FE+DYQ
Sbjct:    1 MACCLTCFSDDPIEGDKY-GHYSNT--FQLSMKDATCQEPGCCLASCFCPPCAQYIIRQKALEGDMSNYRCCQGYYDEACFKSGSCGESSCPEVCLCFEATFCNSCAVSSTRRLVMDTYLLQSDPCDRRLIRLNNCIQCLTCPCHILAICDPEFRDCAQPVDYCANCFYYSVAACMTTQVNFEIDYQ 184
[Close]
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Match: A0A024G979_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G979_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.200e-50
Identity = 88/185 (47.57%), Postives = 123/185 (66.49%), Query Frame = 2 
Query:  170 CLICVKDDPVPGSKMDGYY--DNPNKFQIGMMEAPCKNTCWCCFGCLCMCCAQFIVRKRALDGNLDNYLCCQGYFP--MCCMQAGDCGERSCPCFCLCMEVTMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASICIEEIRELARIIDCIAELTYMSTVGCMTGQMIFEM 712
            C++C       GS +DG     N N+F +GMM APC + C C   C C CCAQ+I+R++ALD ++  Y+C QGY    + C+++G CGERSCP  CLC+E  +C+ CAVSA+RM +MD++++ PD WDNRIIR NN +QLLSC+C+  +ICI E+          A+ TYM+T GCMT Q+  E+
Sbjct:    2 CILCS------GSPVDGDVRGQNSNEFMVGMMSAPCSSPCCCLASCFCPCCAQYIIRRKALDNDMSKYVCFQGYLDGVIPCLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKWDNRIIRCNNCIQLLSCVCSCLAICISELGNXXXXXXXXAQCTYMTTQGCMTAQVNVEL 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5237.12601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB6_ECTSI1.370e-11985.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB5_ECTSI6.260e-10281.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZB7_ECTSI1.440e-9770.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWZ0_9STRA3.580e-9168.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5GIB4_9STRA5.870e-5550.79Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2UXX8_9STRA4.920e-5451.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UXW4_9STRA6.310e-5448.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A484EEY5_BRELC2.650e-5249.73Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2V0P2_9STRA9.050e-5248.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024G979_9STRA1.200e-5047.57Uncharacterized protein n=3 Tax=Albugo candida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5237contigH-paniculata_contig5237:1713..14372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog4792.ETI46731
Hectar predicted targeting categoryother localisation
EggNOG OGs2BWTM@1,2S2DX@2759,3QDY9@4776
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_001630.1
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons6
Model size2727
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5237.12601.1prot_H-paniculata_contig5237.12601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5237 1873..12408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.9399252-UTR-H-paniculata_contig5237:1712..18721622930521.9399252-UTR-H-paniculata_contig5237:1712..1872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5237 1713..1872 +
1691481330.1503358-UTR-H-paniculata_contig5237:1712..18721691481330.1503358-UTR-H-paniculata_contig5237:1712..1872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5237 1713..1872 +
1622930522.0785265-UTR-H-paniculata_contig5237:12408..143721622930522.0785265-UTR-H-paniculata_contig5237:12408..14372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5237 12409..14372 +
1691481330.217776-UTR-H-paniculata_contig5237:12408..143721691481330.217776-UTR-H-paniculata_contig5237:12408..14372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5237 12409..14372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.9604645-CDS-H-paniculata_contig5237:1872..18751622930521.9604645-CDS-H-paniculata_contig5237:1872..1875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 1873..1875 +
1691481330.1617575-CDS-H-paniculata_contig5237:1872..18751691481330.1617575-CDS-H-paniculata_contig5237:1872..1875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 1873..1875 +
1622930521.9769661-CDS-H-paniculata_contig5237:8191..83121622930521.9769661-CDS-H-paniculata_contig5237:8191..8312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 8192..8312 +
1691481330.1732447-CDS-H-paniculata_contig5237:8191..83121691481330.1732447-CDS-H-paniculata_contig5237:8191..8312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 8192..8312 +
1622930521.9990683-CDS-H-paniculata_contig5237:9957..100651622930521.9990683-CDS-H-paniculata_contig5237:9957..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 9958..10065 +
1691481330.181418-CDS-H-paniculata_contig5237:9957..100651691481330.181418-CDS-H-paniculata_contig5237:9957..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 9958..10065 +
1622930522.0114007-CDS-H-paniculata_contig5237:11125..112861622930522.0114007-CDS-H-paniculata_contig5237:11125..11286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 11126..11286 +
1691481330.1894085-CDS-H-paniculata_contig5237:11125..112861691481330.1894085-CDS-H-paniculata_contig5237:11125..11286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 11126..11286 +
1622930522.0262322-CDS-H-paniculata_contig5237:11582..117201622930522.0262322-CDS-H-paniculata_contig5237:11582..11720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 11583..11720 +
1691481330.19807-CDS-H-paniculata_contig5237:11582..117201691481330.19807-CDS-H-paniculata_contig5237:11582..11720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 11583..11720 +
1622930522.0580406-CDS-H-paniculata_contig5237:12336..124081622930522.0580406-CDS-H-paniculata_contig5237:12336..12408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 12337..12408 +
1691481330.2074137-CDS-H-paniculata_contig5237:12336..124081691481330.2074137-CDS-H-paniculata_contig5237:12336..12408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5237 12337..12408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5237.12601.1

>prot_H-paniculata_contig5237.12601.1 ID=prot_H-paniculata_contig5237.12601.1|Name=mRNA_H-paniculata_contig5237.12601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MACCLICVKDDPVPGSKMDGYYDNPNKFQIGMMEAPCKNTCWCCFGCLCM
CCAQFIVRKRALDGNLDNYLCCQGYFPMCCMQAGDCGERSCPCFCLCMEV
TMCSSCAVSASRMYIMDKFSVSPDPWDNRIIRFNNFLQLLSCICNIASIC
IEEIRELARIIDCIAELTYMSTVGCMTGQMIFEMDYQAQNAPKAQAIVGR
*
back to top

mRNA from alignment at H-paniculata_contig5237:1713..14372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5237.12601.1 ID=mRNA_H-paniculata_contig5237.12601.1|Name=mRNA_H-paniculata_contig5237.12601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12660bp|location=Sequence derived from alignment at H-paniculata_contig5237:1713..14372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTATTCGTCCTACAGGATATATGCATCTAAAATAAAACATTCTCAAAA
GGGTTCCTGGAAGGGTCGTCTCACAAGCGCCCAAACCCGAGCAGTGTGAC
CAGGAGCCTACATCAGCCTGACCACTCTAGAGAACTAAAGGAAACAAGCG
TACCTCAATCATGGTGAGCACTGAAGATGATAGCGTGGCGGTGGAAATGC
CGTTGTATTGAGTTCGAGAAGCCACACGGCGATAGTACAGGCAAACTGAA
AATGATATGTACTACCGATGGACTAGATCAACACATTCGAAGCCCAACCA
CGTAAGACTTCCGTGCACGCAAGTCCCCCCCAAGAAAAAGAATTGGCCTG
TTATTTCTTTCCTCCCGTGGGCTGTGGGCCCACCCCCTCAACTGCCGTAA
TAATGGACGGAAAGTCACAAGGTACACACTGTAGAACATGTGTGTGAGCT
GGGCTGACTTGTTCTCTTGAAAAAGACAGTCGGTAAATCGCACTGTTGAG
TAAATATTCAGGGAACAATAATCGACATCGTTTCCCATAAATGGTACAAA
TAGCTGCTGCTTGGCGTTATAACCGTGTAGACGAATGCTTGCTGTCATCA
TAGTTGGTGTCTCAGGTCTACTATCAGCTTGCTACGTTTTATTGGAAGTG
CACCCACCCAGTCCTCTTGTCTCGTGGAAAATCACAGAAAGCTTTCTCAA
GGTGTAGTAATTCTTTTCAATGATTAACAGATTCGCAATGTCACATGAGA
TCTTACAATTTGCCGACTCTTCCGACAGCAGATGTCCTCAGCTCTTTGCT
GTGAAGTGGGCGGCGCCGTGTTTGTAACCCACCCACCTGAATTCGGCAGC
TGTATCCTGTCAGCGCATGATCTGTTTGACTGGTGTATTTCCCGTGTATT
GTCGTAGTCTAAGGCGGCATAGCATTGCCCCTATTATTGATGTACATGGA
ATGGGGCGTAGACACCATGCCTGTCGTTCCAAAATATCATGTAACCCGTT
TGGAAAACGTGCTATCACGCTGATTCCAACCAGGCACTATTTTTTTCCTA
GTCACTGTTCGAACGGGGGCTTTTTCAACGGTCAAACGGGAACGGGGGAT
CCTCCACGAAAAATCCTCCCGCATGCATACTCATGACTGCACCCTGCAAT
TTCTAAGCGATTATCTTGAGTGTGCACCATCCAGCTGTGATAATATTCTA
TCGTAGGTAATAAGATGATGCGAGTCACACACCCAACACCTTGGACACGA
CGAGACAAAACAACCTCGTCGCGCACTGTAACCAATTGTCTCTTCATTTC
ATGCGGTGTACTTCACACGTTCCTCTTTTTATTTCATCGTTCGATCTCGA
AAGCTGAGGTAAGTCTTTTCGTCAAGTACGGACAAACCGTTGCCCAGGGC
CAGCATTCGTGAGCATTTAAATAATGAGTAAATAACTTGAGCATTCAAAA
AAAAAAAATCGTGACAGACAGGGACACAGGTACTGTGTGAGCTATCTAGC
TATGCGCAGCAAGGACGGTCAGGTTTTTGTATGTACTTGCTCAGTAAGAG
CTACAAGGACCACAGCAAAACGAGGGGCTGACACTAAACTTCCTCGCCAA
AACTGTTTTTTGATGGGTAGCTATGATGTTAGCACGTGAGGCATCTGATT
CCATGTCCCTGGTGTGTGGCTTTGCGTGGCAGGAGCACCTTTTCGTCGTC
AGCCAGTTGGCATGTAGTGGGTACAAACGAACTTGATATCATCATTCGTA
TCAGGTTGTGGTTTCTTTGATCTCATACTCTCGTGTGCGAGTTCATTTGA
CCAACCGCGTCGTCTCCAATGAGCCCCCAAAAAGATGAAAGGTCAACTTA
TGCCACGGCGCTGATATCACCGCAATAGAAGGAGGGACTTGATGACCGGT
GGATGCTGTAAATCACTGGGGAACCTGCTCATTTTCATTCCCAGCCCATT
ATACCTGCCGCTCGAATTTGAAGGTGCAGCGAAATTCCTCGCATCAGGGC
AACGTACCCCTCTCCAAGTGCAGGCGACTGTCCCCTACTCCTCGGTGACC
GAATGTTGTAGGAGGTTATCCGCACCGAGACCTGCACCATACTGAGTGCT
GCCGACTACTGCCAAAGCATCTCGGTTGCACGCCTCGTAGCATTCACACT
GCGCTGTATTCAACCTTCTTCCACATCTTTGCGCCTTGCATGTTTGGTCT
ATTTCTATTTCGTGAAGCATGAGGGAATTCCGTTTTTGCAATATTCCTCA
TATTGCTGCTACGGATTTTCGGCTTGCAATATAAGGCTGAGCTCTCTTTA
CGTTGCCTCCTTCCGTTCAGTAGGTGAAGGAACTGAGATATGTGGAAGAC
ATGGATATTGTTGGTTTTTATTATTTGGCAGAGTTGGACTCCAAATTTTC
ATCGCAAAATAAGTGCAACACGTATTGTACGAGAGGCTCCAAAAAGCTAA
GATGACCCAAATATCATCGAAAGAACGGTATATTTGGGGTCTCAGCAATA
CCTTGCACAGAGTCGTGCTGCCTCGCCATTGTGTAAGTTCGAGACACCCG
GTTTTATTGTCATCGCAATATCAATTGTAGGGGAGTTGCCTGGTGGTTAT
TGTGTCATTTTTGCCTTTTTTTTCGAGTCACTTGCACACGCCGTGGGCTT
CATGGATTGCTTTGAAAATTTCTGGTCCCATTCTATAATTGAACATCAAC
AATTCCAAATCTGCAAAAAAAAATCATGAGGGTCTCACAAATCTAAGTTA
TTTTACTTTCTTAACAGAGGAGGTATTACATGGTCCAGGAATCCTATTTT
TTGAAAATGCAGATATGTTCATGGAAAAAGCTATCGCAGTTTTTCTACGG
ACTCCGTTTCCTAAAGATTTCAGGCGTGTTTTCGGTATTTTTTTCAACCG
TGTTAAAAAAAAGTTATAATTGAGGAAAGCAGTATTCTAAAAGTGTCATA
ATAAAGATACACCCCTTTTGAACAATACCGTGGCGTTTTTTTCAAGTACA
GACCTGTAACAGATGGTATTCGGTATTTCGGAAGTAACATGAAGGCCACT
TGGACTTTTGAGAAAACGTATGGAGGAACCCCACACTATGTGGAGAGTTG
CAGACGAATCACGTAGTAGCCCCTTGTTGTACCCTAGCGGCGAGATGGTC
ACCAGGAAGGTCAACGGACATACGGGAGCTAAGCGTAGTCTCCCTCATCG
ACAGCATGCGCCTTATCTTGGACTCCACCCCTTTCGACGAGGAACTTAGC
AGTACGCTGGAGGATGTTGGTGAGGAAATCAGGACCGCAAATCAAACTAT
CCCAGGACACCCGTTGAAATCATGCCCAACACGAGGTTTACCCATTTTAC
ACGCGGTTTCCAAAAGAAGAAACGATAACACCGTAAAAGATTTTATGTGC
AGTGGGATTTTTTTCACTTGAGCATTCAACCTGCGGGACTTCCGTCTTTT
AAAAGCAGCGCTTCCATTCTGAAGATGTAACATGCGAGCTTCCGCATCAC
TGAATTTATTTTTTTACGTTTGATTATATCTAGAGATGTCACCGTCTTCG
AAAGATGCAATACTAGTACTCCATGCGCACCTCGCCACATCTTTGATTTT
CACATCCGCTCTTTCCCACCTGGGCAACGTGAACCTGTCGTTCTGGTCAT
CATGGTGTCATCAGAGACATCGCCATCGAAATCCCCCAGGAGTACCGTAA
TTGGGGTTGTTGAGAATGTGTTATACCTGAAACGTCTACTGAAAAGAAGG
GTTCAATTTTCCGCCAGACGGTATCTCGGACGCCATCCGGTCATTGTTCT
GGGATGCCAGCGCATACTGTATACGATATGACCCCGTTCTTTCCAAATTG
GCACCCATCAGTCAATACAGTCATTAAACCTGATAACAGAGGACAGATGC
TGTGAAACACCAAACAGCGTACTTGCTTCGCCAGCATGGTAAACAGCTCA
ATCCGATACAGAGCTCATCTCGAAACATGTTGTATGGGCAGATGATTTGG
TGCTGCTGTCCCGTCTCATGGGGTGTAAACGTGAAACGTTGAACGACGCT
GGCATCGCAAGCGTAGAAGATCACATAATCAAGCCGCTCAAATTATATTT
TCTTTACTCCTCTGTTTCGACCACCAAACAATCATGGAGCGCAGCGTTTT
TGGTTTTTACTGTATTTATACCTAAGCGAAATGCGAAGTATTTGGGCCTT
CACCTTGTACCCTTCAGGCATATTTTTGGTCTTCTCAAGGTACCGCAATC
CCAATGTGAAAATTGGAGACGGTCACCATGAGTTCACGAAATCGCTCCAA
CACTCATACTTGACTCCATAAACTCTTGTATTTGCGTAAGAGCGGGGACA
GAGGGATGATGTATTGCATCCAGTCTACACCGTCAAAGAGCCCTTGTATC
ATGCACTCAGCTACCGCGCAACATAGTTTAGTACTGACATTGGGCTGTAC
ATGAACCACCCGTTTGAGCGCTGGAGTTAAAAATATATGTCTTTGGGCTT
CACACTGTCAAAATCGTCCCGAAGGTGGGCGTCCAGGATTCGTGTATGGG
GCATGTAACCCGGGCAAACTTTATTCACTATTATGAATCCCAGCGTTTGG
ACACCATGATGTGGTCAATATAAGGAAATTATCTCAGCCGCTGTTGCAGC
CGCACCACATCACACTTGACCTGCGCGCGGATGGGAGCTACTACAGTTGT
GCGAGACATAACCCGACTATTTTTTCTCTCAACGTGTTCTACCTGGTGCT
ATCTCGAGAAAAGAAGAAACTGAATGTCCAGCAACCTTCGTAGCACGCGA
AGTATGGGACAAAGGCACTACCAAGTCCTCGTCAAAATTGCTATGATCGC
CATCGCTTGTTATGGAAGTTGATGGTATAGCGTGGTTGGGTGCTTGCGAA
GTACTGGCTACTGTTTGGGTCGTGTTATCTGCTTCAACGAACAGAACAGC
AAATATTGGAAAATAACTTGATACGGAGTATATCATTCATGTTCCTTCAA
CTGTAGGAGTTAACTGGAACTGGTATTTGAAACTATGGCCAGTCGACAAG
CTAAGGTCAAGGAATCGAAAGGTTCTGCACGGAAACAAGTAGGCTGCCCC
CGGGCCACAACGAGAGGTGGATCATACCCCCCCGCCTTCGTGATGTGTAG
CTGAACAAATGAAGGTACTGCTTGAGCAATGTAAAATGGAATGGGAGGCC
GTTTGGAAGTGTAACAGTCATCTGCAATGTTGGAAAATGGTATGGCACGA
CCGACAGTATGAGGCATCGCCTAGCACCACCTCAGTCTGCTGAGCTGTGA
GTTCAGGTGTAGCAGGGGAGGCTGTAATCCGTACACAATGCCTGCAACAA
AGGAGGTTATTTCACCTATTGTGTGTAGCTTTGAAGCAATCAATGAAACG
TGTACGAGGACATGTGTCAATGTTGTAAAACATGGTCAGCACGTCAGGAG
GACAGGCCCACTACGGTCAATATAGACCATCCTTCAATACGAAGCGTCGT
AAAACGTTATCCCCCGCCTCCCCTGAAAGAAAACTGTAACGTCATTTTTG
GTGGGGCGTATCTTGCCCCCTACAGGAGATATTGAAATGGTTACTATGTT
GTGTGTTTCAGGACTAATAGCCGCCAAGGTCAGCCCAATTTTAACCAGTT
TTGCAACTTTCTGTAGGAAAATATGAGAAGAGGCCAAATTTGACATTTTT
TCCCATCTTTCTCTGTTTTGCGCCACGTGCACCCGGCGGAATTCGGTAAT
TTCTGCGAAAAATCGGGGGTCGAACCCCGAACACATTGGCTGTTTCGAAT
GACCAAAGAAATTGGAGATGTTCAAGTGTCTCCATGGCACAGGAAGCTTG
TAGCTTAAAAATAGTTTCCCTCATCTGTTCACAACATCCAACATGGAGTA
ATACGATTTATAAAAACAAAACAAAATAGAGCATCTAAGAGGGCAACCAA
AATATGGATTATTTGTTAGCTTATTCTTTCGGTCTTCGTTACTGCGACCG
CTATACCGCCAGCGTAGGACTGCTGGTGCCGTCATGGCAGCATCCCTGCT
TCGTGGGAAACAAGAGGAAATTTGGCGCAGGCAGTTTCTCCCGAACATCC
GTAAGCCTGCCTTCACGGCAGATTCTTCGTCATGTGTGTGTAGCGTGCTT
TTTTTCCTAGTTTGTCGATACGTACACGGCGAAATCAGCGTGTTGAGGAA
GGGCACTGCGTGAAGCGCACTTTAGTTTCCCCGCCGAAGAGCGGTAGCGG
AGAAAAGAGGTCCGTCGTATCGAAAGCTTTTTCCTCCAAAAATATTAGTA
ACCCTGCTGCGTAGATGGAAGAAGTGAAACAAAATCTGGTCGTGATCGAA
TTGAGTTTCGCCAACGTAACAGCGATCGCTTTCCTTTCTCTCTGCCCGTC
TCTTGTCTCTGACTGACCGTTTATTATCTACCCACCTCGCTTTTTTGTTC
TTACCCACTGACGTTACTTTTGCCGCCAGGCTTGCTGCTTAATCTGCGTG
AAGGATGACCCTGTGCCCGGGTCCAAGATGGACGGGTACTACGACAATCC
CAACAAGTTTCAGATCGGCATGATGGAGGCACCCTGCAAGAACACTTGCT
GTGAGGACATTAATCAGATTCGTCATGTGTTTTGCTTTTTCTCAGTAGCA
CGCGGTCTTGTGTGGTTGATCCCTAAAAACGTTATTTCCCACCGTAGTGC
TACGGAAGTAAAAATTGAAGCGTAATAAGGAAGGACGACCTTTTCATTAT
ACAATAGTATGATATCTTTTGATCCTGCTGAAATTGAGCTATCCCAATGA
AAGTTCGGATTTGAGCCGAAACCTGACACTAAATATTTCAACCGGAGGGT
AATGTTCTGATACTACATGCATCACCAGAAGTGTTTTTCTGTCATGAGGC
ATGATCGGGGTACACTCGTGGTCATTTTGTCCTTTTCCACGAAGTATCCG
GTCAGTGTGACGTGAAAGGACTAAACTGTTGGACTTATCTCGCGTCTCGG
TAAGACGGCAAATTCGGGCCTCTATCTCGTCTTCTGTTTCGTTGCGATAT
GGCAGAAAATGTTGGCAACGAACTGAACTGTGACCTCGGCGGTTTTTTTA
TCCCTGTACAGTAGTCAGTCAATGGGCCTTTCAGAGGCCGAGTGGGATGA
TCAGGGGAGCGGGATTTGCCACTGTTGAAACACGGATCATGCAGCACAGG
AAGATATTTCATCTCCTATTGGTATCACACATCGTGGTATTATGTTTTGG
ACTTGATTTTGTGGCAACCACGGTGCCCATGACATCGACAGCGACATCGA
GAGAAATAGCTTGTTGAGATCTTGTAATGAACCGGCTTTTTGGGGAGTGT
GGCTCTTCATTTTCGAGAAAATTGACTATCATATTAGGGTGTGCCGTGTC
AGCGAGTGTTGACGATTGTTGGCATGGATATGGCGACAATGTTTGCGGCG
CTGGAGATGTTGAACACCATATGGCCCACGGACCTACGCCTGAACGGGTA
GGGTAGCTCGTGAACTGAGCATTACTGGAAGTCTAGTCAGAGGTCTTTTA
GTGGGTGCAACCCCCACACTGCCTACAGGGTTCGGCCGAACCGGGGTGGC
GCTTACCCCGCAGAGGAATAAATAACTCTGTTCTGTTCAACGAAATGTGG
ACATACCTCGGTTTTATATTAAGTATGGAAGCATCGGATAAAGGTTGTTG
CCTTAGCCTTTCGGGGGTTAAAAAGGATCTGAGGTGCCATTGCAGTATTG
TACCTGCATGCAGGGAGTAACGGATTGGACGATATCGATTGTGATTCTGC
AGTGTTATAGGTGAGATCGCGAATGAGCAGTGCGCAAGTGTCAACCTCGT
CATTTTCGTGTTCCTTTTTATTATCCTCCACCCATGAACCGATCCCAAAA
CCCGAAGCTCCCCAAAAACAACAGAGATACCCGGAAATTCACGTACGAAA
TACCATAACCCCGTTCTCGAAACATTAGCCCAAATATTAGCAAAAATATA
GGCCTACTTCACGAAGGCCGTTCCCCCTTCGGGCTTTTTTTTTCTAAACT
AGAAATAGATTTCTCGTATGATACGAGCAAATAGTAATAGTTCCATGGGC
ATCTTCGTTCTTTTTTTTAGATAATTTTTGTTTCGACTGTTTTTTTTCAA
TGTTTTTAGTGCATTGCTGTTTTCGTTTTGTATTTTTCGATTCTGTCGAC
ACTCAAAGATGAGTCGCGTCTGCATGTGTTACGTTTCTTTTGCAGGGTGC
TGCTTCGGATGCTTGTGCATGTGCTGTGCCCAGTTCATCGTTCGGAAACG
CGCGCTCGACGGGAACCTCGACAATTATCTGTGCTGCCAAGGATACTTCC
CAAGTGAGTAAGCAGAGGGATTTCGCGTCGTTCAGCAGTAGAAGAGGGGC
AAAGTGGATTATACTTTTTTCCGTACTGCAGAATACACTCACCCCAAGTG
CTCCTCCCTTCGAGAATTAATGAATTACGCGAAAAGCTGGTGCCTGCTCG
TTATGGCTCCAGACTGAATCAACGATAATGGCCTCTTATTTGCATATTTC
CCCCCTCAACGCTTCAATTTTGCACCTTATCGCACTTCTGTGAGTGTAGT
TTCTGTTGGGCCGTGTAAGTGTCCTGTCGTGTAGGCATTTTTGTACCCTA
CGCATCCGTGCAGCACGGCGCATTCTTCTGAAAATTATGTCTTCTGCAGC
GTCTGTGATGCCACTAGGATCTTCAAGCTTGTTTCCCAGCCACAAAACCA
ACCCGCACGTGCTGTCCACTAACGTGGCGATATCCGCCAGACTTTCGCAG
GGTTTGCTTGGATTACTAGTTACTCCTTGAGAAATACTTGGCCCCGTTGG
GCGCTACTGCTACACTCTCCCACCGACGCCCCCCTACTGCGACCCTCCTC
CGACATGTTTCTCTCATGATCGTACAGGATCTGCGCTCCTCCCTCTGAAC
TACCATATGGGTTCCTTACATGTTCTTTACTCTGGATAATAGATGTCCCA
CGACGTGCTGGGCAATGCATAGTACATCCCCTCCGGGGCTAAAGTCTACA
ACGGTCATCATGGTGCTGGTGCCAGCGTAATAAGCTTGATTTTAAATGGA
TACAAAAATAAGGAGATTTCCCTTCTCTTTTTTCTTTTCCCGTTTTTTAT
CTAGTCCATGCAGGGTATCTTTCTACTGAAGCTCTGCTGAGCAGTCTTGC
GTCGAAGAAAGGGAGCAAATATCCTCTTTCGATGATAACTTGTCTTTCTT
GAATTCGGATTATTTCGGAAGAACTGTTTCCTGGCCGTCGTATTGGGGCT
TAACAAGTTCAACGCAAGTGTCAGCTGACGAATACTTGAAGTTAACCTAT
AATGAAAAATCTGTCCGTGTTTCTGTACGACCCTCCCCATTTGTCCCCTG
AACGATGACAAAGTGTGCTGCATGCAAGCTGGAGACTGCGGTGAGAGGAG
CTGCCCGTGCTTCTGCCTCTGCATGGAAGTGACTATGTGCTCCAGCTGCG
CCGTGAGCGCCAGCCGGATGTACATCATGGACAAGTTCTCGGTCTCGCCT
GATCCTTGGGACAACCGAATCATCGTGAGTGTTGGATTTCTCCCACCGTT
CCATTCTCGTCCTCGGTTGCTGTAGCTTTCTGATCGCATTGTGTCAGTCT
AGAGTAGGTCCAGAGTATGGATGGCACATAAACTATGTTGCGCATTGTGA
AAAATTATGTTTGACTGGAACACAGCTTCTCATTCAATTTTGTTCAATCT
ATGGAAAATAATCCAGCAGCTTGTGAATGCTGAGCATACCTCGTTTTGTT
TTACGGTTGTTCCCCCCCTTCCCTTTCATCCCCCCTCTACCACACGTCGC
CCCCCTCCCTACTTTTTCAGCGCTTCAACAACTTCCTGCAGCTGCTGTCG
TGCATTTGCAATATAGCGTCCATCTGCATAGAAGAAATTCGAGAACTCGC
GAGGATTATCGACTGCATCGCTGAGCTGACCTACATGTCCACGGTTGGCT
GCATGACGGTGAGGAAGGCTGGCCATGATTATTTGTTCAACTGCCTTCGC
ATAACCTATACTTCGTCGGAGTAAGTCGACGTGTAAGTTTCTTCGCAAGG
AGATCATTTTCCAAATTTAATCATTCGGATGCGGATTGTCACATGAACGT
GAGTTCCACCACAGCAAGCTTTCATTACTTGGTTTCACTTGTAACGAGTT
TCACCGTATTCGGTTTGGAATTGGTGGAAGAACAGAAGTACCTCCTGAAA
ATGTGTGCTCCCCCCGTCGGTGTTCACCACTAGGTTAAACACTGTATTTG
AGGTCCACGTTCTTGGCATATTAGAGTGCACCCAGAAAGTTATCTAGATT
TTCAGGCCTGGGTAGTTTTGAGTTGTGCTCCAATCTCCAGGCCCCGATTT
GAGCTCTGCCAACTCACGGTCTACCCAGAGTTGCCGTGAATTCTAGCGTT
CGGTTCGACGAAGTCGTGTTCAGCTCCCTCTCTTTCGAACCCAAAATAAC
AAAAACGTCAAACCATTAAATGTATTCAGCTGCCCATGCCCCCCAAGAGC
CATAGCCCATTTTAAAATCGCCATGTTTTATGTTTACTCCCTGTCTTCAT
TCGGGCCATCTCTGTTGAGCGCAGGGACAGATGATTTTTGAGATGGACTA
CCAGGCCCAAAACGCACCCAAGGCACAGGCTATAGTGGGGCGGTAAGTTG
GCCGCGCCCAACGACAAATGCCTTCGCGGTATCGTCATTGTCATTTTGCC
GATGGCATGCGGTGGGGTGTTACTCCCGCCTCCATCCCCACATGCTGTAT
TCCACTATCCCCCTGGTCCTGCCTGCCACGGTGCTGGGTTTATCGCACGT
TGTAGAATGGTACGCATCATTGTACATGTTGATTGACGAGGTGTAAATTC
ACGCGTTTGGATACTTGGGAGAGAAATATGATCTTATCATTTTTGCAGGC
AGCGATGAACAGGCGATATGGGTGTTTCGTCTGGGGTGGGGGGAAAAAGG
ATATTCATACGTGTCGGGTTAAAATCTCGCGCCCGTGGAAGGTCCTTCGC
CTGTTCGTGGGATTCCACTGTGTGATTCATGGGGGAGTTGCCACACTTGA
AATTGGATGAATTGCCATAGGTCTATAAAAGGCGCATCAGACACCGAAGT
GAAGGGGTCTCATGGTAGGAGAGACGGGGGGGCACAATTGTGGCATGCCA
AGCGCAGAACATGCTGTGCTCGATGACGTTTCCTGAAGCTTGCAGATGTT
ACCGATAGCGTTGCTGTGTACACTAATGACTAAAAGCGCCACGTGTGTTG
AGTGATGAGTTAGCAGAAACTAAAGCGATAAGATGGCAATATGTTGATTT
ATGTTTAAAGGCGCGAAAGCTGGCGATGCCAGGCATGAAACTAGAGAAAT
ATCATCTGAAATTCAAGTTACTAGAGCCGTCCATACGGAGGGGATTATGG
TGCTCGAGTAGATCAAGTTTTGGAACAGGCTCCATTCATGAGAGGGGGAG
AGAAAGGAGGTACTTTGATGTACAAGTTGTGTGTGGATGCGCGGTAACTC
TGTTCTGCTTCAGTCTTGACAGGTAGTTGGTTTTTTATTTGAGAATCGTA
GGCTTCTTCGCTCGGCACACATTTACCTCCTACCCATTCACTGTACCGTA
TAGTTGAACACGGCTCAATTTGACGCTTTTTGTTGATAATTTTTCTTTGT
TGTTTCTCGTGCCTTGTTTTGACTTGGAGAGTTTTGAGAAAAGTACATTT
TTACATGGATGTTTCTTTGCATTGCGTCACCGTTTTCAGATGAGCGGGTG
TCACCGGATGACCGAGAAAAAAATTTATGCTTTGCGTAGATGTAGTGGGT
GCGCATATATAATGCCCCGAAAGGGAGAAGAGGGGGAAAGCACGTCCACC
TAAGAGTCGTGTAGGCATTATTGACGTAACGGTGTCGGATGAAGTAGAAA
TCACTTATGAGGTCATGGTAAGATGGCAAGTATGGGGCTATTGCCATCCG
CCCGCGGCTGGGGAAAGGTGCGAATAACACGAAGGGAGGGCGCGGGCGAC
GGAGAAGGTTGCGTGTGCACTATTACCGCTGAACGATTTTTGTGCCTTCG
CCCAACACAAATCATGGTTAGTTCAGTTTCAATCCTTGAGTAAGTTGATT
TAGGTATAAGCTCGAGCGAAGGGAGTGAAAATGATTCCGCACTAACTAGG
CTTGCGGACGAACTTTTTTGTTGGAGTTAAAGTTCTGTTGAATTTGAACG
GAGAACATCGAAAATGGTGCCAGCGAAGAAAGGCACTTTCCGGGGAGCGT
GCGTGACCATCTTTCGATACTATTTGCACTGCTCAGTGAAGTTGGAGACC
TATTCATACGTCGTTTCGCACGTCGACTGCCCTTCAATAGCACTATATTT
GTAGACTCTCATTTAAATTGAATGGATCTTCAATTCCTACTAAAAAGTCG
GTGGCAAAAATCCAAATATTACCTATCAAGGTAAAATATGATTCTGCGCC
CTTCGGTGTAGTACAACAGCGACGTCGTAAACAAAGCGATGTAATTCTGA
TTTCGCTACATTGGTGTCCTGAAATAAGTATCGGTGTAAGGCTCAGGTTG
ATGGGGGTGAGGCCAAGAGTAACCAACGCATCGTCCAAGACCACCGGCAG
GCTTAACGTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5237:1713..14372+

>mRNA_H-paniculata_contig5237.12601.1 ID=mRNA_H-paniculata_contig5237.12601.1|Name=mRNA_H-paniculata_contig5237.12601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig5237:1713..14372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGCTTGCTGCTTAATCTGCGTGAAGGATGACCCTGTGCCCGGGTC
CAAGATGGACGGGTACTACGACAATCCCAACAAGTTTCAGATCGGCATGA
TGGAGGCACCCTGCAAGAACACTTGCTGCTTGCTGCTTAATCTGCGTGAA
GGATGACCCTGTGCCCGGGTCCAAGATGGACGGGTACTACGACAATCCCA
ACAAGTTTCAGATCGGCATGATGGAGGCACCCTGCAAGAACACTTGCTGG
TGCTGCTTCGGATGCTTGTGCATGTGCTGTGCCCAGTTCATCGTTCGGAA
ACGCGCGCTCGACGGGAACCTCGACAATTATCTGTGCTGCCAAGGATACT
TCCCAAGGTGCTGCTTCGGATGCTTGTGCATGTGCTGTGCCCAGTTCATC
GTTCGGAAACGCGCGCTCGACGGGAACCTCGACAATTATCTGTGCTGCCA
AGGATACTTCCCAATGTGCTGCATGCAAGCTGGAGACTGCGGTGAGAGGA
GCTGCCCGTGCTTCTGCCTCTGCATGGAAGTGACTATGTGCTCCAGCTGC
GCCGTGAGCGCCAGCCGGATGTACATCATGGACAAGTTCTCGGTCTCGCC
TGATCCTTGGGACAACCGAATCATCTGTGCTGCATGCAAGCTGGAGACTG
CGGTGAGAGGAGCTGCCCGTGCTTCTGCCTCTGCATGGAAGTGACTATGT
GCTCCAGCTGCGCCGTGAGCGCCAGCCGGATGTACATCATGGACAAGTTC
TCGGTCTCGCCTGATCCTTGGGACAACCGAATCATCCGCTTCAACAACTT
CCTGCAGCTGCTGTCGTGCATTTGCAATATAGCGTCCATCTGCATAGAAG
AAATTCGAGAACTCGCGAGGATTATCGACTGCATCGCTGAGCTGACCTAC
ATGTCCACGGTTGGCTGCATGACGCGCTTCAACAACTTCCTGCAGCTGCT
GTCGTGCATTTGCAATATAGCGTCCATCTGCATAGAAGAAATTCGAGAAC
TCGCGAGGATTATCGACTGCATCGCTGAGCTGACCTACATGTCCACGGTT
GGCTGCATGACGGGACAGATGATTTTTGAGATGGACTACCAGGCCCAAAA
CGCACCCAAGGCACAGGCTATAGTGGGGCGGTAAGGACAGATGATTTTTG
AGATGGACTACCAGGCCCAAAACGCACCCAAGGCACAGGCTATAGTGGGG
CGGTAA
back to top