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Homology
BLAST of mRNA_H-paniculata_contig5230.12597.1 vs. uniprot
Match: D7G4V8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V8_ECTSI) HSP 1 Score: 143 bits (361), Expect = 3.750e-33 Identity = 134/402 (33.33%), Postives = 178/402 (44.28%), Query Frame = 3
Query: 3 VYGDVWRWLGDAKVCSLKHQVVEAQFFYVQVDSLGAKASAITQTFPNLSCLQLLDNGIRNLKQLEKLRPILARLSTFGLGKNPIRKFASPGAIRGWLRTQGNPTLSLLMAPTEHRVDDSGS---------------------------RLVSPSLKNLLPSPLVPHNPPPPPETFSGIFPGGVIDGPGAADAGGIHDVGVGGKISGGEDVTGASSRSPPVGQGIVDSFADRPKETVEQRGS--QSFISPGKASCAVDKGSSVSGSGDVFEECQRRQEFHAGGSS-----TGVSD----------------DQD--AGEDEAFARLKGARDRAAASSWGSVALSRVGGGSVTGAKSSSFDATSYGASXXXXXXXXXXXXSGVAVSSSWGKSADDAKLLCNGIL 1052
VYGDVWRWLGD KVCSL+ QVVEA+F V V S+ KAS I QTFPNLSCLQLLDN IR+L+QLE+LRP+L L+ LGKNP+ + AS A+R W++ QG P +SL+ +P D S + PS +P +P P P P G G+ +A K GG DV S S +G ++ + +RG + I+ K G + GSG + E+ R G + T V++ D+D D AF RL AR RAA+SSWG++AL+ G+S +G+A W SA AKL CNG++
Sbjct: 693 VYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLERLRPMLTNLTALHLGKNPVTRNASEAALRAWVKGQG-PCVSLV-SPGHGPASDGRSICTGDRRQYTQQQQQHCPLTNASASQQQYSPPSTPTTQATPPLPAAPTPHPPC-----------GTGSNNA----------KPLGGSDVGVPSRNSNGHEKGC-----EKTTIRILERGEAGNTVIAARKDKQMQSNGDNKPGSGGIIEQSTRSASERQSGPTVRSQHTAVNESNNTAASAALVRVECTDRDPLVSTDAAFERLAEARSRAASSSWGAIALA--------------------GSSTASHLGDDPDGVNGMA----WASSARGAKLACNGMV 1042
BLAST of mRNA_H-paniculata_contig5230.12597.1 vs. uniprot
Match: A0A6H5JFV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV0_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.820e-33 Identity = 135/384 (35.16%), Postives = 178/384 (46.35%), Query Frame = 3
Query: 3 VYGDVWRWLGDAKVCSLKHQVVEAQFFYVQVDSLGAKASAITQTFPNLSCLQLLDNGIRNLKQLEKLRPILARLSTFGLGKNPIRKFASPGAIRGWLRTQGNPTLSLLMAPTEHRVDD-----SGSRLVSPSLKNLLPSPLV------PHNPPPPPETFSGIFPGGVIDGPGAADAGGIHDVGVGGKISGGEDVTGASSRSPPVGQGIVDSFADRPKETVEQRGSQSFISPGKASCAVDKGSSVSGSGDVFEECQRRQEFHAGGSS-----TGVSD----------------DQD--AGEDEAFARLKGARDRAAASSWGSVALSRVGGGSVTGAKSSSFDATSYGASXXXXXXXXXXXXSGVAVSSSWGKSADDAKLLCNGIL 1052
VYGDVWRWLGD KVCSL+ QVVEA+F V V S+ KAS I QTFPNLSCLQLLDN IR+L+QLE LRP+L L+ LGKNP+ + AS A+R W++ QG P +SL+ +P D +G R + + SPL H+ PP T P P G ++V K GG D+ G SR + + R E E + I+ + G ++ G D+ E+ R G + T V++ D+D A D AF RL AR RAA+SSWG++AL+ G S S D + +W SA AKL CNG++
Sbjct: 733 VYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLEHLRPMLTNLTALYLGKNPVTRSASEAALRAWVKGQG-PCVSLV-SPGHGPASDGRNVCTGDRRLHTQQQQQ--SPLTNAFAGQQHSSPPSTPTTQAAPPLPAAPTPHPPCGTGTNNV----KPLGGGDM-GVPSRHSNGHENGCEKTTIRVLEQGEA--GNTVIAARQDKKMQCNGDNMPGFEDIVEQSTRSASERQSGPTVRSEHTAVNESNNTPASAALVRIDCTDRDPLASTDAAFERLAEARSRAASSSWGAIALA---GSSTASHVSDDPDGVN---------------------DMAWASSARGAKLACNGMV 1081
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1349 |
| Cds size | 1011 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5230.12597.1 >prot_H-paniculata_contig5230.12597.1 ID=prot_H-paniculata_contig5230.12597.1|Name=mRNA_H-paniculata_contig5230.12597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp
MAPTEHRVDDSGSRLVSPSLKNLLPSPLVPHNPPPPPETFSGIFPGGVID GPGAADAGGIHDVGVGGKISGGEDVTGASSRSPPVGQGIVDSFADRPKET VEQRGSQSFISPGKASCAVDKGSSVSGSGDVFEECQRRQEFHAGGSSTGV SDDQDAGEDEAFARLKGARDRAAASSWGSVALSRVGGGSVTGAKSSSFDA TSYGASSNSGKPSGGSDSSGVAVSSSWGKSADDAKLLCNGILKRVSEAQR LDHDFDHAWEAVVGRIVQDVLNRAQGSHGMGTSSDNNTCSNSSTTPRGFD SCRNGGSTTTEDHARERHSAWTRFSRPPPRASWLDD* back to topmRNA from alignment at H-paniculata_contig5230:545..4403+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5230.12597.1 ID=mRNA_H-paniculata_contig5230.12597.1|Name=mRNA_H-paniculata_contig5230.12597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3859bp|location=Sequence derived from alignment at H-paniculata_contig5230:545..4403+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGTGTACGGCGACGTTTGGAGGTGGCTGGGCGACGCAAAAGTATGCTCC
CTCAAACACCAGGTCGTAGAAGCTCAGTTTTTCTACGTGCAGGTCGACAG
CTTGGGCGCTAAGGCATCTGCAATAACCCAGGTGAGATGCTGCTGCATCT
TTCCTCGGGGTCTGCCTGTCCTGTGGCGATAGATTGATCCATTCATTCCC
ACATGGAAAATAAATACCATCCTATCGTATAGATATGACTGCGGTGGTCA
CAACCAAGGTATCATATCTTGGCCCGCTTGGGGTGGAGGTAAAACTATTC
CTCTTTTGAAAAAAATACGTATGTTTCAGTTGGAGTCATCCTTCGACGCG
ATTCTGTATCCAGGACCATGATTGGTTGGCGAACCCATTTTGTTTTCCAA
AGATATTAAAAATTTAATCGGTTTCTACGGAGATTCGCTCTTCTTTAAGT
GTCAGTTGCCCCACCGATCACAGACCCTGGCAACATATTCGAACCTCCGT
AGAAATAGACTGGCCTATCTCAACAATAAGGTCCTTAGGCGAGTATGTGG
ATATAGTCGCTCAATATTTACTGAATATATCGAGTAATACCGTATTTGGC
GGTGTTATCGCACCTCCTTGTGTTTTTTTCAAGCTCAATTTTCTCGACAA
CGACAGTGTTTGCTCATGACACCGATAGCGCGTATTGTTGCAACTATGTC
GTAAAGATACTTCGACAGACTTGCTGCTTCGGTGGTGCAGGCAGGCTCAT
GCATCTCGAGAAAATCCAGTTTGAAAAAATAACATCACATTAGCAAGGGC
GATGCGATACCACCGTCTATTACGGTACTGCCCGTCTTCAGTAATAATAA
CCGCGTACTCCCCCGTCCGGCAGTCCAACCCTCGCAACTTACTTTCTTCC
TGCATTGATGTCCATCCACATACACGGAACTGGCCGAGATCTTACCTCAC
AATCAAATTAGAAAATAGAATAATACAATGCCAGCTTTTTATCTGGCTTC
CCCTATTGGCAAATTGGTACATGCTATCCCTCACACGAAATCCATCACAT
ATTATCTTGTTTTTTTGTGTGCCACAGAGCCTCCGCTTCAGGAAAACGAA
GTGCAAAGTATTTCCTATTGAAATATGTACAATATAGAAATACGTAACCC
CGTGACCCCACCCGCGCCCCGTGATTTCCAGCGTATTTCCATCATTTTCG
GGCGAACAACAGGATTCGTGTGAGGGCTGAATTTTGCTCCATGTGCACCA
GCTGTCGGATCACGAGTGCCTGTAGTACCGACGATGACGTATTTTTCAGC
TTTTCGAAGCCTCGTCAGTGTTGGATTTTAGTCTGTTTTGCGCGTATGAT
GTTGACGTGTTTCGTTCATATTTATCCGATACTTACACTCATGTGTAATG
TGTTGCACTAGAACAGGAAGAATCACTTCAGCAATGGCAACATAGCACAA
ATATGTCGAAGTTTCTGTTTCTCTCTTGGCCCTTCATTTCAGCACTTGGC
GCATTGTTTTCACCTTCTCGTAGGAGTTTTGCGGTACATGGAAATTTATT
TCATCTATTAGGCTGCACTGCTCATATAGTGCTTGAACCCTGCTGCTATT
GCTATGAAACGACCGCCCTCCCACCATTGAGCATTCGATCCGTACGCCGA
GGGCCACATCACCGTCCGGGTACATGCTCGCGTACCCCACCTGTTCCCAT
AGTCTAAGCAACATACCTTAGGCCGCATAGCATTTTGCCAGGATTATTTT
CCCCTACCATCTCGTGGTATATGTGGAACAACAGGCATTTTTTTCATAGT
TTGTCACAGTGTTCACTACATAACAACAAAGCAGTGATATACCTTCTCAC
TTGAATATATATATATAAAAATATATAAATATATAAATATTCATCGGCAA
TACTGAAAACATCGATAAAATAACGAGTGGAATACTGAATGCTGTGCCAT
GACATCTATGTGACTTTCCAAACGCTGGACGGGATCGTCACGAAACTCCC
CGCAATCGCAACCCCCCTTTCCCGCGCATGCCTTGACCCCTCCTATTACT
TCACCAGACATTTCCGAACCTCTCCTGTCTCCAGCTGCTGGATAACGGCA
TCCGTAACTTGAAACAGTTGGAAAAACTCCGCCCAATCCTCGCCAGGCTC
TCCACCTTCGGCCTGGGCAAGAACCCCATTCGAAAGTTCGCCTCGCCAGG
GGCTATTCGTGGTTGGCTGAGGACACAGGGTAACCCTACTTTGAGTCTGC
TGATGGCCCCGACCGAACACAGGGTGGATGATTCGGGAAGTCGACTGGTG
TCACCTTCGCTGAAGAATCTACTGCCGAGCCCGTTAGTTCCGCACAACCC
GCCACCCCCACCTGAAACATTCTCTGGGATTTTTCCGGGCGGGGTAATTG
ATGGCCCCGGAGCGGCAGACGCCGGGGGGATTCACGACGTGGGTGTTGGT
GGGAAAATCAGTGGTGGCGAGGACGTAACAGGGGCGTCTTCGCGGTCACC
ACCGGTGGGGCAGGGAATCGTGGATAGTTTCGCCGATCGTCCCAAAGAAA
CGGTGGAACAACGAGGCTCACAGTCGTTCATTTCTCCCGGGAAAGCTTCG
TGCGCCGTAGACAAGGGTAGTAGTGTTTCGGGCAGCGGGGATGTGTTCGA
GGAGTGCCAACGTCGGCAGGAATTCCACGCTGGTGGAAGTTCTACGGGTG
TCAGCGACGATCAAGATGCAGGTGAAGATGAGGCATTTGCGCGGCTCAAG
GGGGCTCGAGATCGCGCAGCAGCGTCATCTTGGGGAAGCGTTGCTCTGTC
GAGGGTAGGGGGGGGCTCTGTGACAGGAGCAAAATCGTCGAGCTTTGATG
CTACCAGTTATGGTGCAAGTAGTAATAGTGGGAAACCGAGTGGTGGTAGC
GATAGCAGCGGCGTGGCGGTTTCATCGTCCTGGGGCAAGTCTGCGGACGA
TGCGAAACTGCTGTGCAACGGCATCTTGAAAAGAGTGAGCGAGGCGCAAC
GACTGGATCATGACTTCGACCACGCCTGGGAAGCCGTTGTAGGGAGGATT
GTTCAGGTCAGTGATGTGGACAGCTCAACTGTTTTTCACGTTGCGACGAT
TGCAATGCGTGCTATACCGCAATTGTATGTTTCACTGCCACGCCCATGTA
TCCAGTGTTTTTCTCTTCAAGTCATTCATGTATAGTACCTTAGTTCCCGG
TCTATTTAAGGTTTGATTGGTTGGTGGAGGGCTTCGGGTTTTCCCTTTCA
ATGCACCCGCAAACTAGATCGTGATAATTCATTTGTATGTGAAAACTATT
GGAATACTGTACTTTCGCCGGACCACATATTAGGACTAAATATGCACTTT
TTCATTCAATTGAATTGTGAATTTCTTCACCTGATCGAAACCAAACTTCG
TGCTAGAGATCAAAGGCTACGTAACTCATATTGGTGCGCACACGCTGATA
CGTTGATCAATGTCACTCTACACATCAACACTGGATGAGGGAATAGCTAC
GAGATAACCTTCGATCTCATCTCACCCCAACCGATTGCTTTCGCGGTGGC
AGGCTTCAAGCGCATCATTTTATTCCGCTCAACCCTTGGTGCCCCCAACC
CCTCTTGCGACTCTCTCCCGACCCTACCCTCCGTTCGCAGGACGTATTAA
ATCGTGCTCAAGGCTCTCACGGTATGGGCACGTCTTCCGACAACAATACA
TGTAGTAATAGCAGCACAACACCTCGCGGCTTTGATAGCTGTCGAAACGG
GGGTTCGACGACAACAGAGGATCACGCTCGGGAGCGACATAGTGCATGGA
CGCGATTCAGTCGACCACCACCTAGAGCGTCTTGGCTAGACGATTAATTG
GAACAGGAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig5230:545..4403+ >mRNA_H-paniculata_contig5230.12597.1 ID=mRNA_H-paniculata_contig5230.12597.1|Name=mRNA_H-paniculata_contig5230.12597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig5230:545..4403+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCCCCGACCGAACACAGGGTGGATGATTCGGGAAGTCGACTGGTGTC ACCTTCGCTGAAGAATCTACTGCCGAGCCCGTTAGTTCCGCACAACCCGC CACCCCCACCTGAAACATTCTCTGGGATTTTTCCGGGCGGGGTAATTGAT GGCCCCGGAGCGGCAGACGCCGGGGGGATTCACGACGTGGGTGTTGGTGG GAAAATCAGTGGTGGCGAGGACGTAACAGGGGCGTCTTCGCGGTCACCAC CGGTGGGGCAGGGAATCGTGGATAGTTTCGCCGATCGTCCCAAAGAAACG GTGGAACAACGAGGCTCACAGTCGTTCATTTCTCCCGGGAAAGCTTCGTG CGCCGTAGACAAGGGTAGTAGTGTTTCGGGCAGCGGGGATGTGTTCGAGG AGTGCCAACGTCGGCAGGAATTCCACGCTGGTGGAAGTTCTACGGGTGTC AGCGACGATCAAGATGCAGGTGAAGATGAGGCATTTGCGCGGCTCAAGGG GGCTCGAGATCGCGCAGCAGCGTCATCTTGGGGAAGCGTTGCTCTGTCGA GGGTAGGGGGGGGCTCTGTGACAGGAGCAAAATCGTCGAGCTTTGATGCT ACCAGTTATGGTGCAAGTAGTAATAGTGGGAAACCGAGTGGTGGTAGCGA TAGCAGCGGCGTGGCGGTTTCATCGTCCTGGGGCAAGTCTGCGGACGATG CGAAACTGCTGTGCAACGGCATCTTGAAAAGAGTGAGCGAGGCGCAACGA CTGGATCATGACTTCGACCACGCCTGGGAAGCCGTTGTAGGGAGGATTGT TCAGATGGCCCCGACCGAACACAGGGTGGATGATTCGGGAAGTCGACTGG TGTCACCTTCGCTGAAGAATCTACTGCCGAGCCCGTTAGTTCCGCACAAC CCGCCACCCCCACCTGAAACATTCTCTGGGATTTTTCCGGGCGGGGTAAT TGATGGCCCCGGAGCGGCAGACGCCGGGGGGATTCACGACGTGGGTGTTG GTGGGAAAATCAGTGGTGGCGAGGACGTAACAGGGGCGTCTTCGCGGTCA CCACCGGTGGGGCAGGGAATCGTGGATAGTTTCGCCGATCGTCCCAAAGA AACGGTGGAACAACGAGGCTCACAGTCGTTCATTTCTCCCGGGAAAGCTT CGTGCGCCGTAGACAAGGGTAGTAGTGTTTCGGGCAGCGGGGATGTGTTC GAGGAGTGCCAACGTCGGCAGGAATTCCACGCTGGTGGAAGTTCTACGGG TGTCAGCGACGATCAAGATGCAGGTGAAGATGAGGCATTTGCGCGGCTCA AGGGGGCTCGAGATCGCGCAGCAGCGTCATCTTGGGGAAGCGTTGCTCTG TCGAGGGTAGGGGGGGGCTCTGTGACAGGAGCAAAATCGTCGAGCTTTGA TGCTACCAGTTATGGTGCAAGTAGTAATAGTGGGAAACCGAGTGGTGGTA GCGATAGCAGCGGCGTGGCGGTTTCATCGTCCTGGGGCAAGTCTGCGGAC GATGCGAAACTGCTGTGCAACGGCATCTTGAAAAGAGTGAGCGAGGCGCA ACGACTGGATCATGACTTCGACCACGCCTGGGAAGCCGTTGTAGGGAGGA TTGTTCAGGACGTATTAAATCGTGCTCAAGGCTCTCACGGTATGGGCACG TCTTCCGACAACAATACATGTAGTAATAGCAGCACAACACCTCGCGGCTT TGATAGCTGTCGAAACGGGGGTTCGACGACAACAGAGGATCACGCTCGGG AGCGACATAGTGCATGGACGCGATTCAGTCGACCACCACCTAGAGCGTCT TGGCTAGACGATTAAGACGTATTAAATCGTGCTCAAGGCTCTCACGGTAT GGGCACGTCTTCCGACAACAATACATGTAGTAATAGCAGCACAACACCTC GCGGCTTTGATAGCTGTCGAAACGGGGGTTCGACGACAACAGAGGATCAC GCTCGGGAGCGACATAGTGCATGGACGCGATTCAGTCGACCACCACCTAG AGCGTCTTGGCTAGACGATTAA back to top
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