mRNA_H-paniculata_contig52281.12595.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52281.12595.1
Unique NamemRNA_H-paniculata_contig52281.12595.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: D7FKR6_ECTSI (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.730e-18
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAK 147
            VKML IHRWFDISAAERDLKYKP++TFEEG++ T+ WL+E+WLP ++AK
Sbjct:  298 VKMLIIHRWFDISAAERDLKYKPIVTFEEGFSKTIAWLKEDWLPTFKAK 346          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S2Z2X8_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z2X8_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.920e-18
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAK 147
            V+ML IHRWFDI+AAERDLKY+PLL+FEEGW +TLEW + NW+PK++ +
Sbjct:  306 VRMLMIHRWFDITAAERDLKYEPLLSFEEGWRDTLEWFKHNWMPKFDPE 354          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S0RG05_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RG05_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 3.390e-18
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAKK 150
            VKMLTIHRWF+I+AA+RDL Y+PL +F+EGWA+T+EW QE+WLP Y A K
Sbjct:  299 VKMLTIHRWFNITAAKRDLGYEPLFSFQEGWASTIEWFQEHWLPDYRAGK 348          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S3GUI0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUI0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.110e-17
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEA 144
            VKML I+R+FDISAAERDLKYKP++ FE+GWA T+EW +ENWLP Y+A
Sbjct:  329 VKMLVINRYFDISAAERDLKYKPVIPFEQGWAQTIEWFKENWLPTYKA 376          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S2G9R4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9R4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.450e-17
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKY-EAKK 150
            VK+LT+HRWFDISAAE+DLKY P++ F+EGW  T EW + NWLPK+ EA+K
Sbjct:  117 VKVLTMHRWFDISAAEKDLKYLPVIPFDEGWKQTGEWFKANWLPKFNEAQK 167          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A5B8MXM1_9CHLO (Hypothetical protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MXM1_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 1.210e-16
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYE 141
            V+ML IHRWFDISAAERDLKY P+L+FE+GW +TL W ++NW+P Y+
Sbjct:  298 VRMLMIHRWFDISAAERDLKYAPVLSFEDGWKDTLAWFKQNWMPLYD 344          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S2SV77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV77_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-16
Identity = 30/50 (60.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAKK 150
            V++LT+HRWFDISAAE DLKYKP++++++GWA T+ W +ENWLP +++ K
Sbjct:  329 VRVLTMHRWFDISAAENDLKYKPVISYKQGWAETIAWFKENWLPDFQSGK 378          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S3Y444_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y444_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 8.660e-16
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPK 135
            VKMLTIHRWF+I AA +DL Y+P++TFE GWA+T+ W +ENWLPK
Sbjct:  303 VKMLTIHRWFNIEAARQDLGYEPIVTFENGWADTMHWFRENWLPK 347          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A482T2Y5_9ARCH (NAD-dependent epimerase/dehydratase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2Y5_9ARCH)

HSP 1 Score: 77.0 bits (188), Expect = 1.220e-15
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAK 147
            V+ML I R+F+I+ A+RDLKY+PLLTFEEGWA T+ W ++NWLPKY  K
Sbjct:  230 VRMLVIDRYFNIANAKRDLKYEPLLTFEEGWAQTVSWFKQNWLPKYNKK 278          
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Match: A0A7S2FWZ1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FWZ1_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-15
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 1
Query:    1 VKMLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAK 147
            VKMLT+HRWF+I+AAE+DL YKP++ + EGW +TLEW   +WLP ++ +
Sbjct:   48 VKMLTMHRWFNIAAAEKDLGYKPIVNYGEGWRDTLEWFAAHWLPSFDRR 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52281.12595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR6_ECTSI1.730e-1873.47Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A7S2Z2X8_9CHLO1.920e-1869.39Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A7S0RG05_9CHLO3.390e-1870.00Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S3GUI0_9STRA1.110e-1772.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2G9R4_9STRA9.450e-1766.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5B8MXM1_9CHLO1.210e-1668.09Hypothetical protein n=1 Tax=Chloropicon primus Ta... [more]
A0A7S2SV77_9STRA1.690e-1660.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Y444_HETAK8.660e-1668.89Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A482T2Y5_9ARCH1.220e-1565.31NAD-dependent epimerase/dehydratase family protein... [more]
A0A7S2FWZ1_9EUKA1.370e-1557.14Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52281contigH-paniculata_contig52281:202..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D7FKR6
KEGG rclassRC01163
KEGG koko:K07748
KEGG ReactionR07494
KEGG Pathwayko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
EggNOG OGsCOG0451@1,KOG1430@2759
EC1.1.1.170
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size153
Cds size147
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.097021-UTR-H-paniculata_contig52281:201..2071622930521.097021-UTR-H-paniculata_contig52281:201..207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52281 202..207 +
1691481329.689088-UTR-H-paniculata_contig52281:201..2071691481329.689088-UTR-H-paniculata_contig52281:201..207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52281 202..207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.1142807-CDS-H-paniculata_contig52281:207..3541622930521.1142807-CDS-H-paniculata_contig52281:207..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52281 208..354 +
1691481329.7111688-CDS-H-paniculata_contig52281:207..3541691481329.7111688-CDS-H-paniculata_contig52281:207..354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52281 208..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52281.12595.1prot_H-paniculata_contig52281.12595.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52281 208..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52281.12595.1

>prot_H-paniculata_contig52281.12595.1 ID=prot_H-paniculata_contig52281.12595.1|Name=mRNA_H-paniculata_contig52281.12595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MLTIHRWFDISAAERDLKYKPLLTFEEGWANTLEWLQENWLPKYEAKK*
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mRNA from alignment at H-paniculata_contig52281:202..354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52281.12595.1 ID=mRNA_H-paniculata_contig52281.12595.1|Name=mRNA_H-paniculata_contig52281.12595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig52281:202..354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGATGTTGACCATCCACAGATGGTTCGACATTTCGGCAGCCGAACG TGACCTAAAGTACAAGCCCCTTCTCACATTCGAGGAAGGGTGGGCGAACA CTCTGGAATGGTTGCAGGAGAACTGGCTGCCTAAATACGAAGCCAAGAAA TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig52281:202..354+

>mRNA_H-paniculata_contig52281.12595.1 ID=mRNA_H-paniculata_contig52281.12595.1|Name=mRNA_H-paniculata_contig52281.12595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig52281:202..354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGACCATCCACAGATGGTTCGACATTTCGGCAGCCGAACGTGACCT
AAAGTACAAGCCCCTTCTCACATTCGAGGAAGGGTGGGCGAACACTCTGG
AATGGTTGCAGGAGAACTGGCTGCCTAAATACGAAGCCAAGAAATAGATG
TTGACCATCCACAGATGGTTCGACATTTCGGCAGCCGAACGTGACCTAAA
GTACAAGCCCCTTCTCACATTCGAGGAAGGGTGGGCGAACACTCTGGAAT
GGTTGCAGGAGAACTGGCTGCCTAAATACGAAGCCAAGAAATAG
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