mRNA_H-paniculata_contig52260.12594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52260.12594.1
Unique NamemRNA_H-paniculata_contig52260.12594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52260.12594.1 vs. uniprot
Match: A0A6H5K892_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K892_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.970e-20
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 EAALDLSNRSALSDLFAISHVKGFPSINGYRLGRAPDERQQLHWNEINASWGQVRTVLTWCVSPELGVWSLKY 219
            E A  LS RSALS+LF+I HV GFPSING+RLGRAPD++++LHWNEINA+WG+   +L  CVS  +   S ++
Sbjct:  492 ENAAHLSERSALSELFSIRHVDGFPSINGFRLGRAPDDKRRLHWNEINAAWGEA-VLLVRCVSNAVDFRSKRF 563
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BLAST of mRNA_H-paniculata_contig52260.12594.1 vs. uniprot
Match: A0A397H515_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397H515_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 6.230e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   16 LSNRSALSDLFAISHVKGFPSINGYRLGRAPDERQQLHWNEINASWGQVRTVL 174
            L   +  +D F I H   F +ING+RLGR P+  Q + W+EINA+WGQ   +L
Sbjct:  305 LQKTNVYNDTFCIGHDGHFGTINGFRLGRLPN--QMVDWSEINAAWGQTLLLL 355
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BLAST of mRNA_H-paniculata_contig52260.12594.1 vs. uniprot
Match: A0A1Y1ZB23_9FUNG (APG6-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZB23_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 1.590e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   16 LSNRSALSDLFAISHVKGFPSINGYRLGRAPDERQQLHWNEINASWGQVRTVL 174
            L   +  +D F I H   F +ING+RLGR P+  Q + W+EINA+WGQ   +L
Sbjct:  274 LQKTNVYNDTFNIGHDGHFGTINGFRLGRLPN--QAVEWSEINAAWGQTVLLL 324
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BLAST of mRNA_H-paniculata_contig52260.12594.1 vs. uniprot
Match: A0A813FZN8_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FZN8_POLGL)

HSP 1 Score: 50.4 bits (119), Expect = 2.020e-5
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   16 LSNRSALSDLFAISHVKGFPSINGYRLGRAPDERQQLHWNEINASWGQVRTVL 174
            L   S L+++F IS    F +ING+RLGR P+  Q + W E+NA+WGQ   +L
Sbjct:  146 LRRSSVLNEMFHISQEGPFGTINGFRLGRLPE--QLVPWEEVNAAWGQACLLL 196
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BLAST of mRNA_H-paniculata_contig52260.12594.1 vs. uniprot
Match: A0A812RCQ5_9DINO (Atg6 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RCQ5_9DINO)

HSP 1 Score: 48.5 bits (114), Expect = 9.230e-5
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   16 LSNRSALSDLFAISHVKGFPSINGYRLGRAPDERQQLHWNEINASWGQVRTVL 174
            L   + L+++F IS    F +ING+R+GR P+  Q + W E+NA+WGQ   +L
Sbjct:   78 LRKTNVLNEMFHISQDGPFGTINGFRMGRLPE--QPVPWEEVNAAWGQACLLL 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52260.12594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K892_9PHAE6.970e-2058.90APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A397H515_9GLOM6.230e-645.28Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A1Y1ZB23_9FUNG1.590e-545.28APG6-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A813FZN8_POLGL2.020e-545.28Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]
A0A812RCQ5_9DINO9.230e-541.51Atg6 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52260contigH-paniculata_contig52260:730..957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930521.0436747-CDS-H-paniculata_contig52260:729..9571622930521.0436747-CDS-H-paniculata_contig52260:729..957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52260 730..957 +
1691481329.6773243-CDS-H-paniculata_contig52260:729..9571691481329.6773243-CDS-H-paniculata_contig52260:729..957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52260 730..957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52260.12594.1prot_H-paniculata_contig52260.12594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52260 730..957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52260.12594.1

>prot_H-paniculata_contig52260.12594.1 ID=prot_H-paniculata_contig52260.12594.1|Name=mRNA_H-paniculata_contig52260.12594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EAALDLSNRSALSDLFAISHVKGFPSINGYRLGRAPDERQQLHWNEINAS
WGQVRTVLTWCVSPELGVWSLKYVP*
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mRNA from alignment at H-paniculata_contig52260:730..957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52260.12594.1 ID=mRNA_H-paniculata_contig52260.12594.1|Name=mRNA_H-paniculata_contig52260.12594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig52260:730..957+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCAGCATTGGATCTCTCGAACCGATCGGCTCTTAGCGATCTATTCGC
CATCAGTCACGTGAAAGGATTTCCTTCCATCAATGGGTACAGGCTAGGGA
GAGCACCGGACGAGCGGCAGCAGCTGCACTGGAATGAGATCAACGCGTCG
TGGGGGCAGGTACGTACGGTGCTGACTTGGTGCGTGTCGCCTGAATTGGG
CGTTTGGAGTTTAAAATATGTACCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig52260:730..957+

>mRNA_H-paniculata_contig52260.12594.1 ID=mRNA_H-paniculata_contig52260.12594.1|Name=mRNA_H-paniculata_contig52260.12594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig52260:730..957+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGCAGCATTGGATCTCTCGAACCGATCGGCTCTTAGCGATCTATTCGC
CATCAGTCACGTGAAAGGATTTCCTTCCATCAATGGGTACAGGCTAGGGA
GAGCACCGGACGAGCGGCAGCAGCTGCACTGGAATGAGATCAACGCGTCG
TGGGGGCAGGTACGTACGGTGCTGACTTGGTGCGTGTCGCCTGAATTGGG
CGTTTGGAGTTTAAAATATGTACCCTGAGAGGCAGCATTGGATCTCTCGA
ACCGATCGGCTCTTAGCGATCTATTCGCCATCAGTCACGTGAAAGGATTT
CCTTCCATCAATGGGTACAGGCTAGGGAGAGCACCGGACGAGCGGCAGCA
GCTGCACTGGAATGAGATCAACGCGTCGTGGGGGCAGGTACGTACGGTGC
TGACTTGGTGCGTGTCGCCTGAATTGGGCGTTTGGAGTTTAAAATATGTA
CCCTGA
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