mRNA_H-paniculata_contig5226.12592.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5226.12592.1
Unique NamemRNA_H-paniculata_contig5226.12592.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 187 bits (476), Expect = 7.600e-48
Identity = 96/199 (48.24%), Postives = 127/199 (63.82%), Query Frame = 2 
Query:  716 LSNIVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSGGAQVFLAYKQDLVWLRALRS 1312
            L  IV + +VHG+D VPEGY+KV L+  GRKADLN GA GQY+Y+ V+RD S                                      +  +A++FPDRGE++PP +   RR+ +PVDLN+GTNGER +LC ++G  NPI+DI +Y PRK EAPP+GYN LE SPSG+ ADLN G+GG  +FLAY+Q L+ +RALR+
Sbjct:  461 LPPIVAITLVHGNDPVPEGYDKVGLTIAGRKADLNAGAGGQYLYLCVQRDRSW---------------------------------PRTCITGIAVVFPDRGESIPPGYSITRRKSKPVDLNNGTNGERVYLCARQGIGNPISDIVIYQPRKDEAPPYGYNALETSPSGHEADLNHGTGGTPIFLAYRQHLLNIRALRA 626
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.410e-44
Identity = 99/177 (55.93%), Postives = 113/177 (63.84%), Query Frame = 2 
Query:  722 NIVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSG 1252
            NIVDVIVVHGSD V  GY K+  SSGG++ADLNTGA GQYVY+AVKRD      +                           +VG  AVVALALIFPDRGETVPP+FQKVRR+G PVDLN GTNGER+FLCYKRGTTNPITDIQV   R+      G +     P+  PA+ + G G
Sbjct:  273 NIVDVIVVHGSDPVLPGYSKLERSSGGKRADLNTGARGQYVYLAVKRDTPLVDQAGGDDVSHPGGGR---------------MVGVPAVVALALIFPDRGETVPPMFQKVRRRGTPVDLNAGTNGERSFLCYKRGTTNPITDIQVC--RRGGRGCGGLDARTAEPAAKPAEADDGDG 432
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.200e-40
Identity = 104/231 (45.02%), Postives = 126/231 (54.55%), Query Frame = 2 
Query:  725 IVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAG--SGGAQVFLAYKQDLVWLRALRSGIC-YAR-SEASSRPHEQGVLNPPNFEVAAGAG 1405
            +V++  V GSD VPEG+++V  +  GRKADLN GA G Y+Y+AV++D                                        VVALA+IFPDR E VPP F  VRRQG+PVD N GT+GER +LCYKRG  NPITDIQV F  KKE+PP GY  L  +P    ADLNAG  S    +F+ YKQ L  +  LR   C  AR S +SS   E G   PP  +   G G
Sbjct:  211 LVEIQAVFGSDAVPEGFKRVSNTPCGRKADLNAGAGGHYIYLAVRKDNPGR--------------------------------RRPPVVALAVIFPDRQEFVPPTFSVVRRQGEPVDFNAGTHGERVYLCYKRGAGNPITDIQVIFSPKKESPPLGYTLLARTPFKYEADLNAGGASSNTTIFICYKQHLRNVNQLRQRECAVARFSLSSSAQAEDGY--PPGTDGEGGPG 407
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A8K1C3P6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3P6_PYTOL)

HSP 1 Score: 134 bits (336), Expect = 1.030e-29
Identity = 72/206 (34.95%), Postives = 110/206 (53.40%), Query Frame = 2 
Query:  725 IVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSGGAQVFLAYKQDLVWL--RALRSGICYARSE 1336
            I D+ ++   D VP+G+ K+  S  G++ADLN G  G +VY+ V RD +                                      +  +A IFPDRGE +P  ++ ++R+G P +LN GT GE+ FLCYKR   + I DI V FPRK +  P+GY +++ SP G+ ADLNA +GG +V + YK+ ++ +    L S + +A S+
Sbjct:  158 ITDIAIMFTGDGVPDGFTKIERSPSGQRADLNKGGGGVFVYLCVSRDTTD---------------------------------NKVPISEIAAIFPDRGEFIPTDYEVIQRRGVPANLNTGTQGEKIFLCYKRSANSSIQDIAVLFPRKGDRAPYGYIKIDKSPEGHFADLNATTGGTEVNICYKKKVIRMSINGLNSSVLHAISK 330
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A1V9ZGJ9_9STRA (Brefeldin A-inhibited guanine nucleotide-exchange protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGJ9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.270e-26
Identity = 66/195 (33.85%), Postives = 102/195 (52.31%), Query Frame = 2 
Query:  725 IVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSGGAQVFLAYKQDLVWLRALR 1309
            I D++VV   D++PE +EK+  S  G KAD N G  GQ+VY+ +KRD S     S                                +  + L++P++GE +PP ++ V R+G P +LN G   E+ ++CYKR +T  +TDI + FP+K E  P+GY +++ SP+G P  L+  S    V + YK+ L  +  LR
Sbjct:  563 ITDLVVVFSGDIIPEDFEKIEKSPTGIKADFNRGKRGQFVYLCLKRDASTLSLGSKRPP----------------------------ISEILLMYPEKGEVLPPNYEYVMRRGVPANLNAGAASEKLYMCYKRSSTTFLTDITLIFPKKGEKLPYGYMKIDKSPTGLP--LSESSNNMDVSICYKKQLGSVETLR 727
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A7R9YDJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDJ0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.120e-23
Identity = 72/197 (36.55%), Postives = 98/197 (49.75%), Query Frame = 2 
Query:  725 IVDVIV-VHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRR-QGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSGGAQVFLAYKQDLVWLRALR 1309
            I D+ V   GS+     Y  V  + GGR A +N G  G+  YI +++D +                                     A+  L +IFPDRGE +PP +  +R   G P DLN  T+G+R FLC K G  NPI D+Q+   +K+E PP GY+ L  +P  + AD+N GSGG  V+LAYKQ LV L  L+
Sbjct:  308 ITDICVRAKGSEPSDPKYYMVAKTVGGRNALVNAGNWGKDTYIWIRKDPTW---------------------------------SEPALTGLTVIFPDRGEFIPPGYGVIRHVHGAPFDLNENTSGDRVFLCRKAGIGNPIVDVQMVLLKKQEEPPEGYSLLSQTPLLHSADVNRGSGGTPVYLAYKQILVNLEPLK 471
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A329RCT0_9STRA (MABP domain-containing protein n=2 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RCT0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.790e-22
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 2 
Query:  974 GGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSGGAQVFLAYKQDLVWLRALRSGICYA 1327
            G A +  +  IFP+RGE VP  ++ VRR+G P ++  GT  E+ +LC+KR TT  I D+ V FP+K    P+GY +++ SP G+ ADLNA SGG +V L YK+ +  +  L     +A
Sbjct:   65 GKAPISEIIAIFPERGEFVPTDYEVVRRRGAPANITTGTQEEKIYLCFKRSTTTSIVDLVVMFPKKNATLPYGYMKVDKSPLGHAADLNANSGGTEVLLGYKKKVASISDLHKKWLFA 182
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: T0S7V4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S7V4_SAPDV)

HSP 1 Score: 110 bits (274), Expect = 8.110e-22
Identity = 60/188 (31.91%), Postives = 96/188 (51.06%), Query Frame = 2 
Query:  725 IVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSPSGNPADLNAGSGGAQVFLAYKQDL 1288
            I D+IVV   D+ PE +EK+  S  G KAD N G  GQ+VY+ +KRD  +    S                                +  + L++P++GET+PP ++ V R+G P +L+ G + E+ +LCYKR  T+ +TDI +  P+K E  P+GY +++ S +G        S   +V L Y++ +
Sbjct:  145 ISDLIVVFSGDITPEDFEKIDKSPSGIKADFNRGRRGQFVYLCLKRDAGSLAIGSKRPP----------------------------ISEVLLLYPEKGETLPPNYEYVLRRGVPANLHAGVSSEKLYLCYKRSATSYLTDIALIVPKKGEKVPYGYMKIDKSLTGQ--SFVDSSSNMEVALCYRKQI 302
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BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A1V9ZGM1_9STRA (Brefeldin A-inhibited guanine nucleotide-exchange protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGM1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.530e-17
Identity = 55/174 (31.61%), Postives = 82/174 (47.13%), Query Frame = 2 
Query:  725 IVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQPVDLN---------------HGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNR 1201
            I D++VV   D+ PE +EK+  S  G KAD N G  GQ+VY+  KRD ++    S                                +  + L++P+RGE +PP ++ V R+G P +LN                G + E+ +LCYKR  T+ +TDI +  P+K E  P+GY R
Sbjct:  165 ISDLLVVFSGDITPEDFEKIEKSPSGIKADFNRGRRGQFVYLCFKRDAASLSVGSKRPP----------------------------ISEVLLLYPERGEHLPPNYEYVLRRGVPANLNTVCRLLCGRFLTFVGQGVSNEKLYLCYKRSATSYLTDIALIVPKKGEKVPYGYVR 310
[Close]
BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Match: A0A6H5KVS2_9PHAE (MABP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.310e-13
Identity = 67/168 (39.88%), Postives = 80/168 (47.62%), Query Frame = 2 
Query:  401 SFFPGWAIPNSTSTEKLWAYPGVASEQAGVSG---------TGG-GINRPRMEIGLEATASSS------ADPVFGENAFGLGTAPGLASTPFGGPGLGNTTRPTSATMATAGTGSAVNPALLSNIVDVIVVHGSDVVPEGYEKVLLSSGGRKADLNTGAMGQYVYIAV 856
            SFFPGW++P  TS+    A PG   +   + G         TGG G  R    +GL A AS+       +D     +  G G     A+T                        SA   A   NIVDVIVVHGSD VP GY K+  SSGGR+ADLNTGA GQYVY+AV
Sbjct:  207 SFFPGWSVP--TSSTFSGAGPGKVVDLGSIGGDMGHRALPLTGGSGGTRGSGGVGLRARASTETTSLPDSDRKRSFSLTGRGEPEAAAAT------------------------SAPPVAGRGNIVDVIVVHGSDPVPPGYSKLERSSGGRRADLNTGARGQYVYLAV 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5226.12592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFI0_9STRA7.600e-4848.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LKD9_ECTSI5.410e-4455.93MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
W7U6C9_9STRA5.200e-4045.02Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
A0A8K1C3P6_PYTOL1.030e-2934.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZGJ9_9STRA4.270e-2633.85Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
A0A7R9YDJ0_9STRA1.120e-2336.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A329RCT0_9STRA4.790e-2242.37MABP domain-containing protein n=2 Tax=Phytophthor... [more]
T0S7V4_SAPDV8.110e-2231.91Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZGM1_9STRA3.530e-1731.61Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
A0A6H5KVS2_9PHAE7.310e-1339.88MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5226contigH-paniculata_contig5226:374..6903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue3e-28
Seed eggNOG ortholog4792.ETI34022
Preferred nameFGD5
KEGG koko:K05724,ko:K12494,ko:K17362,ko:K18442,ko:K20163
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001558,GO:0001726,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030027,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030427,GO:0031090,GO:0031252,GO:0031267,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0042995,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046847,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051336,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:0120025,GO:0120031,GO:0120036,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
EggNOG free text desc.Sec7 domain
EggNOG OGs3QAU0@4776,COG5307@1,KOG0929@2759,KOG1729@1,KOG1729@2759,KOG2127@1,KOG2127@2759
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Exons4
Model size1409
Cds size1392
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5226.12592.1prot_H-paniculata_contig5226.12592.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5226 374..6887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.94329-CDS-H-paniculata_contig5226:373..4551622930520.94329-CDS-H-paniculata_contig5226:373..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 374..455 -
1691481329.6127474-CDS-H-paniculata_contig5226:373..4551691481329.6127474-CDS-H-paniculata_contig5226:373..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 374..455 -
1622930520.9586434-CDS-H-paniculata_contig5226:1055..12281622930520.9586434-CDS-H-paniculata_contig5226:1055..1228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 1056..1228 -
1691481329.6260214-CDS-H-paniculata_contig5226:1055..12281691481329.6260214-CDS-H-paniculata_contig5226:1055..1228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 1056..1228 -
1622930520.9709358-CDS-H-paniculata_contig5226:3122..40401622930520.9709358-CDS-H-paniculata_contig5226:3122..4040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 3123..4040 -
1691481329.6365597-CDS-H-paniculata_contig5226:3122..40401691481329.6365597-CDS-H-paniculata_contig5226:3122..4040Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 3123..4040 -
1622930520.9833262-CDS-H-paniculata_contig5226:6668..68871622930520.9833262-CDS-H-paniculata_contig5226:6668..6887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 6669..6887 -
1691481329.6536696-CDS-H-paniculata_contig5226:6668..68871691481329.6536696-CDS-H-paniculata_contig5226:6668..6887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5226 6669..6887 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.9986682-UTR-H-paniculata_contig5226:6887..69031622930520.9986682-UTR-H-paniculata_contig5226:6887..6903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5226 6888..6903 -
1691481329.6669188-UTR-H-paniculata_contig5226:6887..69031691481329.6669188-UTR-H-paniculata_contig5226:6887..6903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5226 6888..6903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5226.12592.1

>prot_H-paniculata_contig5226.12592.1 ID=prot_H-paniculata_contig5226.12592.1|Name=mRNA_H-paniculata_contig5226.12592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=464bp
MERSASHTFNVTGGSGKSNAYNSGRGSSGMFPITSGAPILRSVSMAAGID
EVAGGGGSGGKPRGPNAYIRFLKTRVTATPEPESAAATSKMLAAAANAAA
VSLSNAAAAASANPTTTARPYATPYSTDSFFPGWAIPNSTSTEKLWAYPG
VASEQAGVSGTGGGINRPRMEIGLEATASSSADPVFGENAFGLGTAPGLA
STPFGGPGLGNTTRPTSATMATAGTGSAVNPALLSNIVDVIVVHGSDVVP
EGYEKVLLSSGGRKADLNTGAMGQYVYIAVKRDVSAFCGSSAAAAAAAAA
GKESCAGGGPGGVRGRRVVGGAAVVALALIFPDRGETVPPLFQKVRRQGQ
PVDLNHGTNGERTFLCYKRGTTNPITDIQVYFPRKKEAPPHGYNRLELSP
SGNPADLNAGSGGAQVFLAYKQDLVWLRALRSGICYARSEASSRPHEQGV
LNPPNFEVAAGAGG
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mRNA from alignment at H-paniculata_contig5226:374..6903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5226.12592.1 ID=mRNA_H-paniculata_contig5226.12592.1|Name=mRNA_H-paniculata_contig5226.12592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6530bp|location=Sequence derived from alignment at H-paniculata_contig5226:374..6903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGCATCTCAGGCATGGAGCGAAGTGCCTCGCACACGTTTAACGTCA
CCGGAGGAAGCGGAAAGAGTAACGCGTATAACTCGGGTAGGGGCTCCAGT
GGCATGTTCCCGATAACATCTGGGGCTCCCATCTTGCGGTCGGTGTCCAT
GGCGGCGGGGATAGATGAGGTGGCAGGAGGGGGCGGTAGTGGCGGGAAGC
CACGGGGTCCGAATGCATATATACGATTTCTCAAGGTAAGGCGTAACGTT
TGTCTCGCCTGTTATACATGGTAGCGAGCGGAGTATCTTTCGGCTATTCC
TCAGGGAAGGGTTGGAACGAGAGCTTGGGCTGAACGAGCGTTCGGAAATT
TATTTGAGAAATTTCCAGGAGATTTTCGGATTTTTCCTGTCTGTGAGTTA
CGTAGGTGCCTGTTGATTTGTTAGCTACGCGAGTGAGGTCCCAGTGCAAG
TGCAGTGAGTGGATGGGTGCAGGACAAGTATGTACCAACTGCTAGACTGA
ACAAAATGATGTAGTGATTGATGGTCGCCTTCCCCTCCCCCCGGCCCTCG
CCCAAATTTTGGTGAACGAGTGAGTGACATGGCAACGTCCTTTAGTTTAT
GGTTGAAACTGTGTCTGAAATGAACTCAACAAATAGCGTCATCATTACGG
TAAGTTGTGAGAGCCAATTATGTTTCCAATGATGGTGTGCTGTAATTACA
CGTGCGTTGTAAGCTTACTTCTTTTATCATACATGCTGTACAGTACTTTA
TGGCTTTATGGCGTCCTTATTCGAAGCTGGGGTATGATCCTTGGTTACCG
GTCGTGGTTGACTAGGTCACTGCCAATGGTTTCAGGAGAGGGCTGTCCCT
CCACGTAATTCATGCGAAAAACGCGCGTTAGAGTACCCCGACGTGTTTTG
TGCAGAGCACAGACGTCTCTAGTTACCTGATTTTAAGATACAAGTGGTGG
ACCCGATTTTACACCGTTTTTTCGGCGGGGCAATAGCGGCCTAAATCGGG
TCCACTTTTGTGCATCCAATCTAGATATGCTGATGGCTATATCCAGCAAT
AATTACAGGCGGAACAACACAATTCAGGAGATGGTGTTCTGAAATATTCG
TTGGTACAAAAGTCGGGCTACGGTAGGGGGAAAGGTGTTTTGATCTTCAA
GCTGCTGGATTACTTGCCCACAAAAAAGTGAACAGGGGAGAACGTCTTGT
ACTGAAGGTGAACATGAAATAGTTTTCACGTAAACGACTCACATGCCCGA
CTAAATATATATATATATATATATATATATATATGCCTTCCACCCACTGG
GATTATCTTTCTCGTAAGTTAACTCTTGCCCCAGTCAGTTAGCATATAGC
TTTGATGCTCATATATTAACTCCATATTATCCATTGTGAGATTATGCTGG
TGACTTCAAACTTGAGTTGTGCGTATACAGTTACCAGCCAAATGAGATCA
ACGATGGGAGTTTAGCGAACGCCACTCCACCTGTTATGAGATGTCGATTG
CGGGACGTGACACTCATTGTCTAAAGTGACGGTTCAATTTCCAATTCCCG
GGGTTATGTAATGTAGCCTCAATTAGAGCTGGGAGCGGCAAGCACGCAGC
GTGTTGCCGCCCCATCAACTGTCAGACTTGTATCAACCCAGGGCTAACTC
TGACAGTACAGCAACATCTAGTTAGTACAAGAGACTAGACCATTGCCAAG
GACTACATCTACCACCCCAGCAGTACCGTTCTGAGAGTACTGTACAGCAT
AGTCAGTAACAGGAAACAACAATCTACGTGTGTGAGATGGTCCGCAATGC
CACTACAGACCTATTCAGTGGTGAGCGTTCTGGCATGGTTCAGGTGCATC
ACAATGCACGATTGAGAATGACCGTACTTACTATCCAAGGGAAAAATACG
TGTTTGACCGAACCGGTCCAAGGAGTGGCTCAAAATATCAAACAAATTGG
CGTAAATACTCACGCCTTCCTGCTGTAGCCCGGCTTACAAATTCATGGTC
GAGGGACCATTTCATCTCTCCCCGGTTTGTCGTGAATCTGCTGGTGAGTG
TAAGTCTACCCATGTAAAGTTTGATGCTGGTAATAGAAAAACCTCAACAA
AGTATGGTGAAGCCGTTGTCATAGATCAATGGAGCTACTGGATATGGCAA
GTGGGTTGACTCGAGAAAAAGGCTTACGGTGGGGTAATTCAATGGGGTGT
TTTGTTTATGGTAGGTGTTCTCGTGGAAGTCGTGTCAAGTCGAGTCCACG
TACAGTACATCAGCGAGTGATGAAGTAGTACATCCTCTTGAAGATACCCG
CAGTAGCCAATGTTGTCGATGTTTGAAGAGGTATGATCAGGGCAAGATGA
AGGTTATGCGATCGTCGTCCTGTTGATTTACTAAAGAGCGCACTCCAAAC
ACCCTTTGAGGTCCTTCGATATTCAGTTTACCGGGTTGATCTGATTCCCC
TCGTACTCCCCGTACCCTCCCCAATGCCGCCTTATTGACTTGTAAACAAT
GTTTGCGGTCACTGAGCAGGGTGGGGGGAGCGCTTAGTGTAAGCTGCAAA
AGCTTAGCATGTGCGCTAAATCGCTCAAATGTGGCAGACCCAAAACTGCT
CAGGTGGTATGTCCCCCAGCAATATTCACATCGTTGAGCGTACCCGTAGT
GTGATGGATGACCATGACAACATCTCCTGCTACTTGGACATTATCCTCCC
TTTTTATCTATTAAAACCCAAGTCCTCTTCCTCTCCCCCTCGATGTACTT
GTACTTCAGTCGTCGGCGCAATATGTCACGTGTCGGGACAATACGTTCAA
CTTAGTTGAAAACGAATTCTGATTCCCTGAATTTTCGCTTCTGCCTCCCT
TTCCTACGTACAGACACGAGTCACCGCTACACCCGAACCCGAAAGCGCCG
CCGCTACCTCCAAAATGCTGGCAGCCGCTGCAAACGCCGCTGCAGTTTCC
CTCTCGAACGCAGCAGCGGCTGCCTCCGCCAACCCTACAACGACGGCCAG
GCCGTACGCCACTCCGTACTCCACTGACTCTTTTTTTCCTGGCTGGGCGA
TCCCGAACAGCACGTCAACCGAGAAGCTCTGGGCGTACCCGGGGGTTGCC
TCGGAGCAGGCGGGTGTATCAGGCACCGGCGGGGGGATTAATCGACCTCG
CATGGAGATCGGGTTGGAAGCAACGGCGTCATCGTCTGCGGACCCGGTGT
TTGGCGAAAACGCGTTCGGGTTAGGGACCGCTCCAGGGCTCGCTTCTACT
CCATTCGGAGGACCGGGTCTGGGCAATACTACTAGGCCCACGTCGGCGAC
GATGGCGACGGCGGGGACCGGGTCCGCCGTGAACCCAGCATTGCTGTCGA
ATATTGTGGACGTGATCGTGGTGCATGGGTCCGATGTGGTCCCCGAGGGG
TACGAGAAGGTGTTGCTGTCGTCCGGAGGCAGGAAGGCTGACCTAAACAC
TGGAGCTATGGGTCAGTACGTGTACATTGCGGTCAAGCGAGATGTCAGTG
CGTTTTGTGGATCTTCAGCGGCAGCGGCGGCAGCAGCAGCAGCGGGAAAG
GAAAGCTGTGCTGGAGGTGGTCCCGGGGGAGTACGGGGGAGGCGGGTAGT
TGGGGGCGCTGCTGTGGTGGCGCTTGCGTTGATTTTCCCGGATCGCGGGG
AAACGGTCCCACCCCTGTTTCAGAAGGTTCGCCGGCAGGGGCAGCCTGTG
GATCTGAACCACGGGACGAACGGAGAACGGACGTTCTTGTGCTACAAGAG
AGGCACGACGAATCCTATTACGGATATTCAGGTGCGGTGCTGGTGTGTAG
TGTAGTGTAGTGTAGTGTAGTGTAGTGATAGTGATGAGTCTACGTACTAG
TCAGCAGAAGTAGATTAAAAAGGATTGGAAAGGCGTAGTTGTGGCTTGCA
TATCTCTACCGTAGTTGTTGGACCGTTGACCATGCGTTCTCGGGAGAAGG
GAGCTTAGAAGGAGGGGGGGGGGGGGTTCCATGTTTTGCCTGTCGTAGTT
TGCCTATCAGAGCGATTTCCGTTGACCAATCGGTCTTTCTTATATTGCCA
AATGTCGCTCAATAATGTTCGCCCTGCCCTCTCTATCGCATACTTAGAGT
CTAATTGATTCACTCATTGAACCCGGAGTTAGGCATCGATTTCACTGGGG
TGGGTGCCAATGCTTTTCAAACTCTATGATTGAGTGTCTCGATAGCTACG
GCGTCACTACTATTGTGCCGATAACGAATAATATATATAATGAGCCGAAG
GAAAAATCTTTGCTGAGATCTATCTGTTGATTATTGAGTTTTTCGACCCT
GTAATTTTAGACTTTTCTCAAATGACCGATCGCGAATCGGGAAAAAAATC
TTATGCGTCCAACCACAAACCCATTGGATAGACCAGCCTCACCAACGTAT
CTCCGGCTGCTGCAATCAATTTGTAACATGGGATCGACTTGAACATGGCG
AAATTTTTTCGTCAAAGTATGCTAGGTTTTTCGAACGAAACACGCGGAGG
ACCGACAGTCTGCACACACTCAGTTTCGTGTTATATGAGCATATAAATAC
AAGTCAACGGAACTGAGTGTGTAAAGATCTCACATGAACAATCGTGAATC
GGGCAGAATCATACTTGCGCACCCGCGAACCGGTCCGCGGACGTAATATG
TTGAAAAAGACTTGGTGTAGTAGTGCGGGTCATATGAAAAATCTTGTTAA
ATGTTGATGTCTCTGTTTTCTCGAGATAGTTGCATTTGGGAGAACATTTG
CGCCTCGGTAGTGATGGCGATACCTCCGTTAGGTTTTACGGTAATACTGG
AAAGCCGTGGTAGTAGATTCGAAACAATTTTCTGGTATGTCCTCGAGTTA
TTGCTCAAAAAAGGAATCTTGATGCTAGTGCAGCGAATTCTCAGGTTGTA
GACAAGCATGAAACTGCACGGGCGTAGCTGTTATTATTCTACTAGTTATA
GAATATCATATGTGATCCCAATACTGTTGTGGTGGTATAAATGTCCCTGT
ATGACAATTTCGTCGAACCCGGTTTTCTGATGAAGACGGAGACACGGAAA
TTCTTGTGTCGTTGGAAAGATGTATGATCTGATCAAGATTTGTCGATCGA
CCTGCCTTTCTTTTGGAATACGCATGGGCTTCGTTTGCTGTGGATAGAAA
ATAGAGATTGAAAAATGTCTCCCCTCAGGGCGTTTACACCTATCCTCATG
TACGGTTTGGATACAGTACCACCTATATATTGGAGGCGTGTTTATCTATG
TTTGTCGAACGCAATGGTTGCACCGGAAATAGCAAGTTGTAGCAATAGCT
GAAGTCGTTGTCGAAATCGCGTGCGGGCAAAGTTGCGAGCACCCCTCTAA
CCCCACCCCTCCCTAACCCGCACACCTAGCTAGCCCCTCGAGGGTCAAAT
GGGGCCCCGGTAGCGTCTAACATCGCCCCAAGCGCCACGCCGCACAGCGG
CGTGGCGACGACCATGGAACCAGGTGGAAGAAGGAATCCGGCAGTACACC
ACAGTAAACACAACTACTCCAGTTGTTTGGTGTGCAATGATTGCATTCGA
CAATCGTTGGTAAACCCTACTGATGTATTCTTTTGTTCTTTCGAATGCCT
AATGCAAATTATTTGCCTAACATCCACGACTAATAAGGATGTGTTCTTGC
CGCCTTCTGGGGTATTGTCTTGAAGGTCTACTTCCCACGAAAAAAAGAAG
CTCCGCCGCACGGTTACAATCGTCTGGAGCTAAGTCCGTCCGGTAACCCG
GCGGATCTTAACGCGGGCTCGGGTGGAGCCCAAGTGTTCCTGGCGTATAA
GCAGGACCTCGTGTGGCTGAGGGCACTGCGATCGGGCATTTGCTACGCGT
GAGTCATGTGTTTTTTTTTTTCGTCGTCCATTCCGAGGCTATTCAAGTTG
TGCTAATTTGTTTTGTCATGATTCATGTTCGTCGCAGCCGATGTTGTATG
TCTGGGCTTTTTTGCCTCCGAGAACTTTTGTCCTCTGACCGCGGGTCGGA
GAAACACTGCTGAAATTAAAAAAGAACGTTGTATGTTGATGACTTCTATA
AGTATGATACAGAGACATCACCTGATGAAGGCAGCAGTCGGTTGACTGTA
TTATTTTGTTTTTAGGTATCCCTACCCCCACTCTACCCACCCTCCAACCG
CCTACGACGCTGTCGAAAGTCGTCCATCGATCGAATGGAGGAGCTGGGGG
GAATGTTGGAGTGAGCTGATCAACGCACCCACGCTTCCGTGTATAGGTAG
CCGGCACCTCGTCTAGTATGTGATTGTCTGATGAACTGTTGTTCTACAAC
GTTGAATAGGGGATACTACAGTCATGTCCCCTGTGTGGGATGACATGTAG
GTTTCCCCTTTCCTAGAGGAATATTGGGGGTCAGACACTCAATCCTCCCT
CTGCTCTCTTTTGACGGTTATTCGACTCGCATGTTGTGAATACTCTAGAA
GGTCAGAAGCTAGCAGCAGACCTCATGAGCAGGGAGTTCTGAACCCTCCA
AATTTTGAAGTTGCTGCGGGAGCAGGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5226:374..6903-

>mRNA_H-paniculata_contig5226.12592.1 ID=mRNA_H-paniculata_contig5226.12592.1|Name=mRNA_H-paniculata_contig5226.12592.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2784bp|location=Sequence derived from alignment at H-paniculata_contig5226:374..6903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGAAGTGCCTCGCACACGTTTAACGTCACCGGAGGAAGCGGAAA
GAGTAACGCGTATAACTCGGGTAGGGGCTCCAGTGGCATGTTCCCGATAA
CATCTGGGGCTCCCATCTTGCGGTCGGTGTCCATGGCGGCGGGGATAGAT
GAGGTGGCAGGAGGGGGCGGTAGTGGCGGGAAGCCACGGGGTCCGAATGC
ATATATACGATTTCTCAAGATGGAGCGAAGTGCCTCGCACACGTTTAACG
TCACCGGAGGAAGCGGAAAGAGTAACGCGTATAACTCGGGTAGGGGCTCC
AGTGGCATGTTCCCGATAACATCTGGGGCTCCCATCTTGCGGTCGGTGTC
CATGGCGGCGGGGATAGATGAGGTGGCAGGAGGGGGCGGTAGTGGCGGGA
AGCCACGGGGTCCGAATGCATATATACGATTTCTCAAGACACGAGTCACC
GCTACACCCGAACCCGAAAGCGCCGCCGCTACCTCCAAAATGCTGGCAGC
CGCTGCAAACGCCGCTGCAGTTTCCCTCTCGAACGCAGCAGCGGCTGCCT
CCGCCAACCCTACAACGACGGCCAGGCCGTACGCCACTCCGTACTCCACT
GACTCTTTTTTTCCTGGCTGGGCGATCCCGAACAGCACGTCAACCGAGAA
GCTCTGGGCGTACCCGGGGGTTGCCTCGGAGCAGGCGGGTGTATCAGGCA
CCGGCGGGGGGATTAATCGACCTCGCATGGAGATCGGGTTGGAAGCAACG
GCGTCATCGTCTGCGGACCCGGTGTTTGGCGAAAACGCGTTCGGGTTAGG
GACCGCTCCAGGGCTCGCTTCTACTCCATTCGGAGGACCGGGTCTGGGCA
ATACTACTAGGCCCACGTCGGCGACGATGGCGACGGCGGGGACCGGGTCC
GCCGTGAACCCAGCATTGCTGTCGAATATTGTGGACGTGATCGTGGTGCA
TGGGTCCGATGTGGTCCCCGAGGGGTACGAGAAGGTGTTGCTGTCGTCCG
GAGGCAGGAAGGCTGACCTAAACACTGGAGCTATGGGTCAGTACGTGTAC
ATTGCGGTCAAGCGAGATGTCAGTGCGTTTTGTGGATCTTCAGCGGCAGC
GGCGGCAGCAGCAGCAGCGGGAAAGGAAAGCTGTGCTGGAGGTGGTCCCG
GGGGAGTACGGGGGAGGCGGGTAGTTGGGGGCGCTGCTGTGGTGGCGCTT
GCGTTGATTTTCCCGGATCGCGGGGAAACGGTCCCACCCCTGTTTCAGAA
GGTTCGCCGGCAGGGGCAGCCTGTGGATCTGAACCACGGGACGAACGGAG
AACGGACGTTCTTGTGCTACAAGAGAGGCACGACGAATCCTATTACGGAT
ATTCAGACACGAGTCACCGCTACACCCGAACCCGAAAGCGCCGCCGCTAC
CTCCAAAATGCTGGCAGCCGCTGCAAACGCCGCTGCAGTTTCCCTCTCGA
ACGCAGCAGCGGCTGCCTCCGCCAACCCTACAACGACGGCCAGGCCGTAC
GCCACTCCGTACTCCACTGACTCTTTTTTTCCTGGCTGGGCGATCCCGAA
CAGCACGTCAACCGAGAAGCTCTGGGCGTACCCGGGGGTTGCCTCGGAGC
AGGCGGGTGTATCAGGCACCGGCGGGGGGATTAATCGACCTCGCATGGAG
ATCGGGTTGGAAGCAACGGCGTCATCGTCTGCGGACCCGGTGTTTGGCGA
AAACGCGTTCGGGTTAGGGACCGCTCCAGGGCTCGCTTCTACTCCATTCG
GAGGACCGGGTCTGGGCAATACTACTAGGCCCACGTCGGCGACGATGGCG
ACGGCGGGGACCGGGTCCGCCGTGAACCCAGCATTGCTGTCGAATATTGT
GGACGTGATCGTGGTGCATGGGTCCGATGTGGTCCCCGAGGGGTACGAGA
AGGTGTTGCTGTCGTCCGGAGGCAGGAAGGCTGACCTAAACACTGGAGCT
ATGGGTCAGTACGTGTACATTGCGGTCAAGCGAGATGTCAGTGCGTTTTG
TGGATCTTCAGCGGCAGCGGCGGCAGCAGCAGCAGCGGGAAAGGAAAGCT
GTGCTGGAGGTGGTCCCGGGGGAGTACGGGGGAGGCGGGTAGTTGGGGGC
GCTGCTGTGGTGGCGCTTGCGTTGATTTTCCCGGATCGCGGGGAAACGGT
CCCACCCCTGTTTCAGAAGGTTCGCCGGCAGGGGCAGCCTGTGGATCTGA
ACCACGGGACGAACGGAGAACGGACGTTCTTGTGCTACAAGAGAGGCACG
ACGAATCCTATTACGGATATTCAGGTCTACTTCCCACGAAAAAAAGAAGC
TCCGCCGCACGGTTACAATCGTCTGGAGCTAAGTCCGTCCGGTAACCCGG
CGGATCTTAACGCGGGCTCGGGTGGAGCCCAAGTGTTCCTGGCGTATAAG
CAGGACCTCGTGTGGCTGAGGGCACTGCGATCGGGCATTTGCTACGCGTC
TACTTCCCACGAAAAAAAGAAGCTCCGCCGCACGGTTACAATCGTCTGGA
GCTAAGTCCGTCCGGTAACCCGGCGGATCTTAACGCGGGCTCGGGTGGAG
CCCAAGTGTTCCTGGCGTATAAGCAGGACCTCGTGTGGCTGAGGGCACTG
CGATCGGGCATTTGCTACGCAAGGTCAGAAGCTAGCAGCAGACCTCATGA
GCAGGGAGTTCTGAACCCTCCAAATTTTGAAGTTGCTGCGGGAGCAGGAG
GCAAGGTCAGAAGCTAGCAGCAGACCTCATGAGCAGGGAGTTCTGAACCC
TCCAAATTTTGAAGTTGCTGCGGGAGCAGGAGGC
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