mRNA_H-paniculata_contig5220.12586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5220.12586.1
Unique NamemRNA_H-paniculata_contig5220.12586.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A6H5KL07_9PHAE (SMI1_KNR4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL07_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 8.750e-73
Identity = 149/323 (46.13%), Postives = 178/323 (55.11%), Query Frame = 1
Query:    4 KSSNQDIMGRLGFDFLAHLEAMRGKG--VRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSR----------------------------------------CVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYG-VP------------RRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITEN 807
            K +N+DI+ RLGFD +AHLEAMRGKG  +R   I D  QA  AAL VWED+N+PYR    LPEDLRAFL TS+G SL W  K   +  E GG GG    E V GRI V  +SA+TRIPLD DDLR +  +                                            A   A  AP+    + D  +   T +  AY +AAF +DS+CEVGRVALVYG  P            RR  P  R  S   + E     ++++    L NPEVW+QDLSCRWHFLAD FTSYFR+M +HLGVLGWQQAF+PVGLSP TE 
Sbjct:    5 KQTNRDILCRLGFDMMAHLEAMRGKGMGIRDFEIQDCVQASAAALRVWEDSNFPYR----LPEDLRAFLRTSNGFSLEWASKQQQRSPEEGGSGG----ENVIGRIRVDSLSAMTRIPLDEDDLRDMAYARTRAXXXXXXXXXXSLPRRRPRFPSSGHGDNGLDAKGFHGGGTAAVLAATFAPS---SSEDHAKTPATSSSSAYGIAAFCVDSSCEVGRVALVYGGTPVMGSGGDTDFGERRERP--RNSSNGSTREKDSSRNKASATQELSNPEVWLQDLSCRWHFLADGFTSYFRMMVLHLGVLGWQQAFTPVGLSPTTEQ 314          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A078AC72_STYLE (SMI1_KNR4 domain-containing protein n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078AC72_STYLE)

HSP 1 Score: 104 bits (259), Expect = 1.330e-22
Identity = 76/264 (28.79%), Postives = 117/264 (44.32%), Query Frame = 1
Query:    4 KSSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSP 795
            K   ++I   + F  ++ LE     GV  +   + +     ++  WE+ N PY     LP+D +AFL  SDGLSL+W +K +             D+    G +++  +  I R+ +D       K SS    +  + + P+                 +  D+AAF IDS  + GR+AL+Y           RG+ +                    P++W QDLSC W F+A  FT YFR+M +HLG+  WQ AF+ VGL P
Sbjct:    3 KQCIREIFDDISFSVISFLE--NHIGVTDVEFIERQGVAEMSIQKWEEENSPYL----LPDDYKAFLQISDGLSLNWKIKKN-------------DQIFPLGSMHLNKLRDIKRLKMD-----RFKFSSVGEEEETSDEEPS----------------EEQKDIAAFDIDSKVKDGRLALIY-----------RGNTN-------------------KPQIWFQDLSCSWFFIAYKFTDYFRLMIMHLGLPHWQYAFTQVGLDP 196          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: C1EEH4_MICCC (SMI1_KNR4 domain-containing protein n=3 Tax=Micromonas TaxID=38832 RepID=C1EEH4_MICCC)

HSP 1 Score: 102 bits (255), Expect = 1.820e-22
Identity = 78/252 (30.95%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   79 GVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVV-AGRIYVGGVSAITRIPL------DADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGEN--SRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLS-PITE 804
            GV+ +     K A ++ +  WED N P++    LPEDL+AFL +SDG  ++W V                 +EV   G +++  ++ I ++P+      DAD      +    V D    D  A  P           G +  +  AAF +DS+   GRVALV+ VP            S SG N    +T   +V       +VW QD+S RWH +ADSF+ Y+R+M  HLG+  W      VG+  P T+
Sbjct:   17 GVQDVKYVQGKPATMSDIQAWEDANSPFK----LPEDLKAFLLSSDGFKMTWDVLFK--------------QEVHHLGNMHINSLAEIKKMPMMLVPHDDADXXXXXVVPPGSVWDPRREDDGARGPD----------GWKPPFPSAAFDLDSSVRHGRVALVF-VPSFEA--------SSSGPNVGDELTPMRSVPH---KAQVWFQDISTRWHIMADSFSEYYRLMTAHLGLPRWHYKLMDVGMDRPTTQ 228          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A8J1Y6S3_OWEFU (Ofus.G17786 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y6S3_OWEFU)

HSP 1 Score: 98.6 bits (244), Expect = 1.840e-20
Identity = 73/276 (26.45%), Postives = 115/276 (41.67%), Query Frame = 1
Query:    4 KSSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRI--------PLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITEN 807
            +S ++    +L F  +  L+  + KG+  + + +   A    +  WE  +  +     LPED+++F  T+DGL L W+VK++             D  +  GR+ + G+S +T+I           A DL  I+ S     D                   +T+  R       F +D     G V LVY   +   P                           +PE+W  D + RWHFLAD+FT+YFR+M  H+G+  WQ AF+ +GLSP  E 
Sbjct:    3 ESKSKTYFEQLTFGVVKSLD--KRKGICDVRLIEKTPAERHTVISWEQKHSCF-----LPEDVKSFFLTTDGLVLKWSVKVN-------------DSILPIGRVEINGISGLTKIVPGNSITSAKGAPDLNDIESSDEETEDG------------------ETSYPRFNPSCRIFELDPCGGFGMVCLVYRNTKPGVPAH-------------------------DPEIWFMDRAYRWHFLADNFTAYFRLMVAHVGLPQWQYAFTDIGLSPFAEQ 215          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI001E1DADE6 (tubulin polyglutamylase complex subunit 2-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DADE6)

HSP 1 Score: 94.7 bits (234), Expect = 6.040e-19
Identity = 75/264 (28.41%), Postives = 124/264 (46.97%), Query Frame = 1
Query:    7 SSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGN-RDAYDLAA--FSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGL 789
            S  + +  ++    L +LE     GV  + +   + A   ++  WE  N  +     LPEDL++F  TSDG  L+W VK+        GP       V  GR+Y+  VS + +    A++     L +  +AD + AD+ A          D+T+G  +  +D     F +D     G+V LV+   + +P  ++          S   +    +  +   EVW  D + RWH++ADSFT+Y+R+M +HLG+  WQ AF+ +GL
Sbjct:    5 SKTKSLFEQMNVGVLKYLE--NKTGVCKLELEPRRPADRPSILAWEQKNTVF-----LPEDLKSFYLTSDGFLLTWCVKIEN------GP-------VPVGRMYLNSVSKMMKFGGPANNT----LVNPSLAD-LDADSDA---------EDETSGTEKPTFDSRCKIFELDPCDGYGKVCLVFKENKTAPEYKKSADIVSKVYTSDYMTYGGTDPKI---EVWFLDRALRWHYIADSFTAYYRLMIMHLGLPQWQYAFTDIGL 231          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: R7V0Q4_CAPTE (SMI1_KNR4 domain-containing protein n=2 Tax=Capitella teleta TaxID=283909 RepID=R7V0Q4_CAPTE)

HSP 1 Score: 92.0 bits (227), Expect = 3.870e-18
Identity = 75/269 (27.88%), Postives = 112/269 (41.64%), Query Frame = 1
Query:    4 KSSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRI-PLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITEN 807
            + SN+    +L F  +  LE  +  GV  + +S+ +    ++L  WE      +    LP+DLR+F  TS+G+ L W VK++             D  +  GR+ V  +  + RI P    D  +  L    + D IA  A     G    D          +    F +D     G+V LVY    +  P +R                          E+W  D S RWH LA++F SY+R+M +HLG+  WQ  F+ VGLSP  E 
Sbjct:    3 EDSNKGNYEKLTFGIMRSLE--KRAGVCDVKLSERQATDRSSLVAWEQ-----KHSCALPDDLRSFYLTSNGMFLKWNVKMN-------------DSRIPVGRLEVNSLDKLIRIGPCTTTDHANPSLF---LLDFIADSADESEKGNPHWD----------HRSRIFELDPCDGYGKVCLVYRNTAQGLPAQR-------------------------SEIWFLDRSLRWHPLAETFLSYYRMMLMHLGLPQWQYGFTAVGLSPQAEQ 213          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI0018D6FE88 (tubulin polyglutamylase complex subunit 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6FE88)

HSP 1 Score: 89.7 bits (221), Expect = 7.600e-18
Identity = 68/244 (27.87%), Postives = 102/244 (41.80%), Query Frame = 1
Query:   79 GVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITENV 810
            G+  I ++D + A    +  WE  N        LP+DL+ F  TSDGL L+W+V+               D+    GR+ +  +S +T+       L   K  S     ++A    A      D D D             F +D    + +V LVY   R   P +                         +PEVW+ D + RWHFLA +F+ YFR+M +HLG+  WQ A++ VGLSP  + +
Sbjct:   32 GICDITLADLQPAERHQVVSWEQRN-----SCMLPDDLKRFYLTSDGLLLTWSVRFD-------------DQLQSVGRMEINKISNVTK-------LAGNKAPSNANTPSLADVDYASDEEQCDEDTDVPAKPHFDTRSRIFELDPCRGIAKVCLVYRNTRPGSPAQ-------------------------HPEVWLLDRALRWHFLAHTFSQYFRMMLMHLGLPQWQLAYTDVGLSPQAKPI 225          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A6J8B8K0_MYTCO (TPGS2 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8B8K0_MYTCO)

HSP 1 Score: 90.9 bits (224), Expect = 1.600e-17
Identity = 79/271 (29.15%), Postives = 120/271 (44.28%), Query Frame = 1
Query:    7 SSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEV---------GRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLS 792
            +  ++++ +L    + +LE  +  GV  I +     A   A+ +WE  N     G  LPED + F  T+DG  L+W VK+        GP          G++Y+  VS +TRI   A ++ S  ++                P  LDL+ D +    +A  L   S DS C++         GRV LV+   R +            G+++    R          EVW  D S RWHFLA+SF +YFR+M +HLG+  WQ   + +GLS
Sbjct:    8 AKTRNLLEQLNIGVIRNLE--KKTGVCKIELDQRSPADRHAVLMWEQRN-----GCFLPEDFKNFYLTTDGFKLTWNVKMDN------GP-------TPVGKLYINRVSQLTRI---AGNVASSHVN----------------PTLLDLEAD-SDNEDEATGLEKPSFDSRCKIYEMDPCDGYGRVCLVF---RENKTGYIDSQELFDGKHTSELIRFGGND--PKTEVWFLDRSLRWHFLAESFMAYFRLMLMHLGLPQWQYGITDIGLS 233          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI0018D5AFA2 (tubulin polyglutamylase complex subunit 2-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5AFA2)

HSP 1 Score: 89.4 bits (220), Expect = 5.170e-17
Identity = 71/260 (27.31%), Postives = 108/260 (41.54%), Query Frame = 1
Query:   16 QDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSP 795
            +D+  +L    +  LE  +  G+  I ++D + A    +  WE      R    LP+DL+ F  TSDGL L+W V+               D+    GR+ +  +S +T+       L   K  S     ++A    A      D D D             F +D    + +V LVY   +   P +                         +PEVW+ D + RWHFLA +F+ YFR+M +HLG+  WQ A++ VGLSP
Sbjct:   19 KDLFNQLTLGVVKSLE--KRAGICDITLADLQPAERHQVVSWEQ-----RSSCMLPDDLKRFYLTSDGLLLTWCVRFD-------------DQLQPVGRMEINKISNVTK-------LAGNKAPSNANTPSLADVDYASDEEQCDEDTDVPAKPHFDTRSRIFELDPCRGIAKVCLVYRNTKPGSPAQ-------------------------HPEVWLLDRALRWHFLAHTFSQYFRMMLMHLGLPQWQLAYTDVGLSP 226          
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI0003F0E051 (tubulin polyglutamylase complex subunit 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E051)

HSP 1 Score: 88.6 bits (218), Expect = 8.460e-17
Identity = 70/272 (25.74%), Postives = 109/272 (40.07%), Query Frame = 1
Query:   16 QDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRD----------DTTGNRDAYDLAA--FSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSP 795
            +++  RL    +  LE  +  GV  + + D K A    +  WE  N        LP+DL+ F  T+DG+ L W +K     G+              GR+ +  +S +            +KL           ++ +  P  +D+D D          D T     +D  +  F +D     G+V  VY   +   P +                         +PE+W  D S RWH+LAD+FT YFR+M +HLG+  WQ  F+ +GLSP
Sbjct:    8 KEMFDRLTMGIVRSLE--KRPGVSDVRLLDRKPAERHIVVSWEQKN-----SCMLPDDLKRFYLTTDGMLLQWNIKFDEHVGQ-------------LGRMEINAMSNV------------VKLGGN--------NSSSNTPSLVDIDYDTDDEDSDGIVDNTAPTPHFDTRSRVFELDPCEGYGKVCFVYRDTKPGSPAQ-------------------------HPEIWFLDRSLRWHYLADTFTQYFRLMLMHLGLPQWQYTFTDIGLSP 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL07_9PHAE8.750e-7346.13SMI1_KNR4 domain-containing protein n=1 Tax=Ectoca... [more]
A0A078AC72_STYLE1.330e-2228.79SMI1_KNR4 domain-containing protein n=2 Tax=Oxytri... [more]
C1EEH4_MICCC1.820e-2230.95SMI1_KNR4 domain-containing protein n=3 Tax=Microm... [more]
A0A8J1Y6S3_OWEFU1.840e-2026.45Ofus.G17786 protein n=1 Tax=Owenia fusiformis TaxI... [more]
UPI001E1DADE66.040e-1928.41tubulin polyglutamylase complex subunit 2-like iso... [more]
R7V0Q4_CAPTE3.870e-1827.88SMI1_KNR4 domain-containing protein n=2 Tax=Capite... [more]
UPI0018D6FE887.600e-1827.87tubulin polyglutamylase complex subunit 2-like n=1... [more]
A0A6J8B8K0_MYTCO1.600e-1729.15TPGS2 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8B8K0_... [more]
UPI0018D5AFA25.170e-1727.31tubulin polyglutamylase complex subunit 2-like iso... [more]
UPI0003F0E0518.460e-1725.74tubulin polyglutamylase complex subunit 2-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5220contigH-paniculata_contig5220:1339..4696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog38833.XP_003060339.1
Preferred nameTPGS2
KEGG koko:K16605
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
EggNOG OGs28VAI@1,2R21Z@2759
Ec32 ortholog descriptionSMI1/KNR4 like domain
Ec32 orthologEc-14_003550.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size822
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5220.12586.1prot_H-paniculata_contig5220.12586.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5220 1339..4672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.1961336-CDS-H-paniculata_contig5220:1338..14711622930520.1961336-CDS-H-paniculata_contig5220:1338..1471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5220 1339..1471 -
1691481329.2517903-CDS-H-paniculata_contig5220:1338..14711691481329.2517903-CDS-H-paniculata_contig5220:1338..1471Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5220 1339..1471 -
1622930520.211873-CDS-H-paniculata_contig5220:2248..27611622930520.211873-CDS-H-paniculata_contig5220:2248..2761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5220 2249..2761 -
1691481329.273952-CDS-H-paniculata_contig5220:2248..27611691481329.273952-CDS-H-paniculata_contig5220:2248..2761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5220 2249..2761 -
1622930520.2268093-CDS-H-paniculata_contig5220:4520..46721622930520.2268093-CDS-H-paniculata_contig5220:4520..4672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5220 4521..4672 -
1691481329.2838488-CDS-H-paniculata_contig5220:4520..46721691481329.2838488-CDS-H-paniculata_contig5220:4520..4672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5220 4521..4672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930520.2412345-UTR-H-paniculata_contig5220:4672..46961622930520.2412345-UTR-H-paniculata_contig5220:4672..4696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5220 4673..4696 -
1691481329.292363-UTR-H-paniculata_contig5220:4672..46961691481329.292363-UTR-H-paniculata_contig5220:4672..4696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5220 4673..4696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5220.12586.1

>prot_H-paniculata_contig5220.12586.1 ID=prot_H-paniculata_contig5220.12586.1|Name=mRNA_H-paniculata_contig5220.12586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGK
RLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVG
GVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAPAPGALDLDRDDTTG
NRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVT
SRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAF
SPVGLSPITENVRLC*
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mRNA from alignment at H-paniculata_contig5220:1339..4696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5220.12586.1 ID=mRNA_H-paniculata_contig5220.12586.1|Name=mRNA_H-paniculata_contig5220.12586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3358bp|location=Sequence derived from alignment at H-paniculata_contig5220:1339..4696- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAGTCAAGCAACCAAGATATTATGGGTCGACTAGGATTCGACTTTTT GGCTCATTTGGAAGCAATGCGCGGAAAGGGCGTCCGGAGCATCAACATCA GCGACTCCAAGCAAGCTCCGGTGGCGGCCCTGACAGTGTGGGAAGACACC AACTATCCCTACAGGCAAGGGAAACGGTCGCGTCGAAGTGCAGTCTCATT CAATTTCAATATCAGAGGTAGCTGGTCAGTACATGTGTAAAGTCAAATCA ATATTTGAATTTTTGAAAATCGAATTCAAAGCTTTGAACTCGAAATCAGT ATTCATGAGACTACAACATAGTGCTGCGCGATTCAGAAGATGTTTCGGAA CAAAAAAGCATCTTAAAATCCCAGCGGATTTGAGGGGGGTGGGGTGGCGG GAGAGTGGCGGGAGGGGTACTCATGTTTTGCATGCCGTAGTTGTTAGGTC ATTGACCATGCGCCTTCGAGAGGACGGTGATTTGTTTCGATCAGAGCGAT CTCTGATTACTAATCGCTCTTTCCTATGTCCACGTATGATGTATGTGACT CAAAAGATTTTTTAATGGGAAGGGATATAATGTACTTATGAAAACGGATG CCAGAGTCTCTCGACCATTGACCTTGGATTTCTGAAATGCCGGGATGGAG CATGCCGGGTTTTCTTCGGTCAGGCTGCGTTTCACAAAGGTAATGCACCG TTCTTCCTTGCTTTGCTACGCCAACGGGATTTTGCCATGGAACTTTGGGC ATCCTGGATTAACGAAATGTTACACATTCGGCAGGCGTGATTGTACATCT CAAGTAGCTCACGAGACTTCAATCTTCGCACACACGTATGCACAAGGTCG CACCACACACAGCGACGTCTCTTCGCATGTGATATACTTGGAATAGAATC TGCCTCGGCCAATCGCCAACGTTTTCAGCCCCATTCCCTAGTAGTTGACT TGTTTTCGACCATCGAAACGTCATGCCCATTATCCCCTATCGGCGCTTTA AGGAGGTCCGAAAAATGATCGAATGAGGAATTTCCAAGAACAAGAGTAAC CGATAGGTAGGTGCATGGTCCGTGGGTGTGTTGCATCTGCTACGTGATTA ACTATACAGGTTTCAAGCATGGCCATTACCCCCATGAGAACATGGTTCCT CTGATTTCATGCCCTGGGGTGCGGTTTGGTGTATGGCACACAAATCGCTC CACAGTCAGTCATTCAGCGTATGGTTATGTATTTGTGTTCTTATCTATCA AGTTCTGCGATTGCTGTACGCAGAACCATGTTCTCCTTTGTATTGGCTGT CTGTACTGTATCTACTGCCTGCAGCTATCCGAACAGCGGCAGTTCCTATC TCCGCAATCATGTGACAGGCCTATTCTTGAGTTGGAAATAATCCGACAAG CTGCTGCTAGTCGCTCGTTTAAGTATAAACATGACACTCCGGTATTGATC TATAACTGCTCAAGTACGAAAACGGAAAATCGTTCAACTCCTATTGCGTC AATGTTGTGGGATATTTTCTGCGGGAGCCATCGCATGTGTATGTCCATAC GTATGACTCCAGATATATATAAAATTTCAAAGCATGGACATGGACCACAA GTGAACCAAATGGCGCGGTAGGCTTCACCTTGCTCAGTACAAGAAAGAAA AAAGGATGTCACTTTGTAATCAAATTAATACTATTTGATCACATTAATCG GTGTAGTTTCATTACTGGTCATTACAGCACTTGAATTTTATCCCTCACAT TTCATTGATTACACTTTCAGCTATGCCATCAATATGTAGACAATGCTTGA AGGTTAAGCGGTAATTCTGATAATCCTATTTATCAGACGTTGAGCGAATA GTGCTATGTGTTAATTTCTTTATATATATATTGCACCGTTTGGATCTTGA AACACGCGATGAATGATCTCAATGAAAAGAAGCAGGTTACCCGAAGATCT ACGCGCCTTCCTATGTACCTCCGACGGGCTCTCGCTTTCGTGGACGGTCA AGCTCCATGGAAAGGGAGGGGAAGGAGGAGGGCCAGGAGGGAGCAGCGAC CGTGAGGTCGTCGCCGGACGCATATACGTCGGTGGCGTGTCGGCCATCAC GCGCATTCCGCTCGACGCAGATGACCTCCGAAGCATAAAGCTCTCGTCAC GATGTGTAGCGGACGCCATCGCCGCCGATGCTCCCGCTCCTGCACCTGGG GCATTGGATTTGGATCGCGACGATACCACGGGCAACAGAGACGCGTATGA CCTGGCGGCATTTTCAATCGACTCTGCGTGCGAGGTCGGCCGCGTGGCGC TTGTCTACGGTGTGCCGCGGCGCAGCCCGCCACCTCGACGCCGCGGAAGT AGGTCGTGTTCAGGGGAAAATAGTAGAGTGACGTCGCGCTCTGCTGTTGA AGCTTGGCTGGTAAATCCTGAGGTGTGGATACAAGATCTTTCTTGCAGGT GAGACGATGGATCAAGCCCACTTGTTCTGTTGTACGCTGTTATGAGAAAA TAACGGCATTGGCTGTCTCCAAATGTGTTTTTGTTTTTTTCTTCACCAAC GGTTGTTCGATCTTTCGTGTTTTGTTACACGCAGAGGGGGGGGAAGCTTA TTAAAGCGAGGGGGAGATTTTCCTAATATTGCTTTGCGTTGCGGTTGTTT GTGAGTGTGTGTTTTCGTTATTGTTCCTGGTCGGGCATGGGTTTTCCTCT CATTGTTCGTTCATCGTGCTCAATACTCGAGTTGTCGTCGCGTGACCCCT CGAGGAGTGGACGGTAAGTCCAGCCATATATCAGCCCAGGCTGCACGTAG ATTTTACGGAAATACATACTCGAACAACCATGAGCGCAGCGACGTTTAGC CTTTAGCTTTGCCAGAGGCGGGCGTTTGAGTGTCGATGTGATTCCTTGTC TGGACCGTATCCGCGCTTCTTATAATGCGTTCAGACTTCCGAGTTACGTT CATATTTTTTTGGTGACACCACGTTTTTTCATCACTTCAGGAAAAACGTG AAAACAATGCAGCTTGTGTCTGTCTGTCCATCCATCCTCCAAGTGTCTAT CCGCCTGTCTGCTTTCTTCTTATCTATCTATCATCGTCTTTCTCTTACTC TTACTCTCACTCTCTAGCTATTCGCCATTTGCTTCGTCTCGTTGTCGTGC CTCTCCAAAAACAATCCATGAGCATCGCGTGTCACTTCCTTTTCCCCTGT TTCAAAATATTTCCCGCCCGAACAGGTGGCACTTCTTGGCTGACAGCTTC ACGAGCTATTTCCGCGTGATGGCGGTGCACCTCGGGGTGCTGGGCTGGCA GCAAGCGTTCTCTCCAGTCGGTCTGAGTCCCATCACGGAAAATGTGCGTC TCTGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5220:1339..4696-

>mRNA_H-paniculata_contig5220.12586.1 ID=mRNA_H-paniculata_contig5220.12586.1|Name=mRNA_H-paniculata_contig5220.12586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig5220:1339..4696- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGACTAGGATTCGACTTTTTGGCTCATTTGGAAGCAATGCGCGG
AAAGGGCGTCCGGAGCATCAACATCAGCGACTCCAAGCAAGCTCCGGTGG
CGGCCCTGACAGTGTGGGAAGACACCAACTATCCCTACAGGCAAGGGAAA
CGATGGGTCGACTAGGATTCGACTTTTTGGCTCATTTGGAAGCAATGCGC
GGAAAGGGCGTCCGGAGCATCAACATCAGCGACTCCAAGCAAGCTCCGGT
GGCGGCCCTGACAGTGTGGGAAGACACCAACTATCCCTACAGGCAAGGGA
AACGGTTACCCGAAGATCTACGCGCCTTCCTATGTACCTCCGACGGGCTC
TCGCTTTCGTGGACGGTCAAGCTCCATGGAAAGGGAGGGGAAGGAGGAGG
GCCAGGAGGGAGCAGCGACCGTGAGGTCGTCGCCGGACGCATATACGTCG
GTGGCGTGTCGGCCATCACGCGCATTCCGCTCGACGCAGATGACCTCCGA
AGCATAAAGCTCTCGTCACGATGTGTAGCGGACGCCATCGCCGCCGATGC
TCCCGCTCCTGCACCTGGGGCATTGGATTTGGATCGCGACGATACCACGG
GCAACAGAGACGCGTATGACCTGGCGGCATTTTCAATCGACTCTGCGTGC
GAGGTCGGCCGCGTGGCGCTTGTCTACGGTGTGCCGCGGCGCAGCCCGCC
ACCTCGACGCCGCGGAAGTAGGTCGTGTTCAGGGGAAAATAGTAGAGTGA
CGTCGCGCTCTGCTGTTGAAGCTTGGCTGGTAAATCCTGAGGTGTGGATA
CAAGATCTTTCTTGCAGGTTACCCGAAGATCTACGCGCCTTCCTATGTAC
CTCCGACGGGCTCTCGCTTTCGTGGACGGTCAAGCTCCATGGAAAGGGAG
GGGAAGGAGGAGGGCCAGGAGGGAGCAGCGACCGTGAGGTCGTCGCCGGA
CGCATATACGTCGGTGGCGTGTCGGCCATCACGCGCATTCCGCTCGACGC
AGATGACCTCCGAAGCATAAAGCTCTCGTCACGATGTGTAGCGGACGCCA
TCGCCGCCGATGCTCCCGCTCCTGCACCTGGGGCATTGGATTTGGATCGC
GACGATACCACGGGCAACAGAGACGCGTATGACCTGGCGGCATTTTCAAT
CGACTCTGCGTGCGAGGTCGGCCGCGTGGCGCTTGTCTACGGTGTGCCGC
GGCGCAGCCCGCCACCTCGACGCCGCGGAAGTAGGTCGTGTTCAGGGGAA
AATAGTAGAGTGACGTCGCGCTCTGCTGTTGAAGCTTGGCTGGTAAATCC
TGAGGTGTGGATACAAGATCTTTCTTGCAGGTGGCACTTCTTGGCTGACA
GCTTCACGAGCTATTTCCGCGTGATGGCGGTGCACCTCGGGGTGCTGGGC
TGGCAGCAAGCGTTCTCTCCAGTCGGTCTGAGTCCCATCACGGAAAATGT
GCGTCTCTGCTAGGTGGCACTTCTTGGCTGACAGCTTCACGAGCTATTTC
CGCGTGATGGCGGTGCACCTCGGGGTGCTGGGCTGGCAGCAAGCGTTCTC
TCCAGTCGGTCTGAGTCCCATCACGGAAAATGTGCGTCTCTGCTAG
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