mRNA_H-paniculata_contig5220.12586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A6H5KL07_9PHAE (SMI1_KNR4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL07_9PHAE) HSP 1 Score: 236 bits (602), Expect = 8.750e-73 Identity = 149/323 (46.13%), Postives = 178/323 (55.11%), Query Frame = 1
Query: 4 KSSNQDIMGRLGFDFLAHLEAMRGKG--VRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSR----------------------------------------CVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYG-VP------------RRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITEN 807
K +N+DI+ RLGFD +AHLEAMRGKG +R I D QA AAL VWED+N+PYR LPEDLRAFL TS+G SL W K + E GG GG E V GRI V +SA+TRIPLD DDLR + + A A AP+ + D + T + AY +AAF +DS+CEVGRVALVYG P RR P R S + E ++++ L NPEVW+QDLSCRWHFLAD FTSYFR+M +HLGVLGWQQAF+PVGLSP TE
Sbjct: 5 KQTNRDILCRLGFDMMAHLEAMRGKGMGIRDFEIQDCVQASAAALRVWEDSNFPYR----LPEDLRAFLRTSNGFSLEWASKQQQRSPEEGGSGG----ENVIGRIRVDSLSAMTRIPLDEDDLRDMAYARTRAXXXXXXXXXXSLPRRRPRFPSSGHGDNGLDAKGFHGGGTAAVLAATFAPS---SSEDHAKTPATSSSSAYGIAAFCVDSSCEVGRVALVYGGTPVMGSGGDTDFGERRERP--RNSSNGSTREKDSSRNKASATQELSNPEVWLQDLSCRWHFLADGFTSYFRMMVLHLGVLGWQQAFTPVGLSPTTEQ 314
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A078AC72_STYLE (SMI1_KNR4 domain-containing protein n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078AC72_STYLE) HSP 1 Score: 104 bits (259), Expect = 1.330e-22 Identity = 76/264 (28.79%), Postives = 117/264 (44.32%), Query Frame = 1
Query: 4 KSSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSP 795
K ++I + F ++ LE GV + + + ++ WE+ N PY LP+D +AFL SDGLSL+W +K + D+ G +++ + I R+ +D K SS + + + P+ + D+AAF IDS + GR+AL+Y RG+ + P++W QDLSC W F+A FT YFR+M +HLG+ WQ AF+ VGL P
Sbjct: 3 KQCIREIFDDISFSVISFLE--NHIGVTDVEFIERQGVAEMSIQKWEEENSPYL----LPDDYKAFLQISDGLSLNWKIKKN-------------DQIFPLGSMHLNKLRDIKRLKMD-----RFKFSSVGEEEETSDEEPS----------------EEQKDIAAFDIDSKVKDGRLALIY-----------RGNTN-------------------KPQIWFQDLSCSWFFIAYKFTDYFRLMIMHLGLPHWQYAFTQVGLDP 196
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: C1EEH4_MICCC (SMI1_KNR4 domain-containing protein n=3 Tax=Micromonas TaxID=38832 RepID=C1EEH4_MICCC) HSP 1 Score: 102 bits (255), Expect = 1.820e-22 Identity = 78/252 (30.95%), Postives = 115/252 (45.63%), Query Frame = 1
Query: 79 GVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVV-AGRIYVGGVSAITRIPL------DADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGEN--SRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLS-PITE 804
GV+ + K A ++ + WED N P++ LPEDL+AFL +SDG ++W V +EV G +++ ++ I ++P+ DAD + V D D A P G + + AAF +DS+ GRVALV+ VP S SG N +T +V +VW QD+S RWH +ADSF+ Y+R+M HLG+ W VG+ P T+
Sbjct: 17 GVQDVKYVQGKPATMSDIQAWEDANSPFK----LPEDLKAFLLSSDGFKMTWDVLFK--------------QEVHHLGNMHINSLAEIKKMPMMLVPHDDADXXXXXVVPPGSVWDPRREDDGARGPD----------GWKPPFPSAAFDLDSSVRHGRVALVF-VPSFEA--------SSSGPNVGDELTPMRSVPH---KAQVWFQDISTRWHIMADSFSEYYRLMTAHLGLPRWHYKLMDVGMDRPTTQ 228
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A8J1Y6S3_OWEFU (Ofus.G17786 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y6S3_OWEFU) HSP 1 Score: 98.6 bits (244), Expect = 1.840e-20 Identity = 73/276 (26.45%), Postives = 115/276 (41.67%), Query Frame = 1
Query: 4 KSSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRI--------PLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITEN 807
+S ++ +L F + L+ + KG+ + + + A + WE + + LPED+++F T+DGL L W+VK++ D + GR+ + G+S +T+I A DL I+ S D +T+ R F +D G V LVY + P +PE+W D + RWHFLAD+FT+YFR+M H+G+ WQ AF+ +GLSP E
Sbjct: 3 ESKSKTYFEQLTFGVVKSLD--KRKGICDVRLIEKTPAERHTVISWEQKHSCF-----LPEDVKSFFLTTDGLVLKWSVKVN-------------DSILPIGRVEINGISGLTKIVPGNSITSAKGAPDLNDIESSDEETEDG------------------ETSYPRFNPSCRIFELDPCGGFGMVCLVYRNTKPGVPAH-------------------------DPEIWFMDRAYRWHFLADNFTAYFRLMVAHVGLPQWQYAFTDIGLSPFAEQ 215
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI001E1DADE6 (tubulin polyglutamylase complex subunit 2-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DADE6) HSP 1 Score: 94.7 bits (234), Expect = 6.040e-19 Identity = 75/264 (28.41%), Postives = 124/264 (46.97%), Query Frame = 1
Query: 7 SSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGN-RDAYDLAA--FSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGL 789
S + + ++ L +LE GV + + + A ++ WE N + LPEDL++F TSDG L+W VK+ GP V GR+Y+ VS + + A++ L + +AD + AD+ A D+T+G + +D F +D G+V LV+ + +P ++ S + + + EVW D + RWH++ADSFT+Y+R+M +HLG+ WQ AF+ +GL
Sbjct: 5 SKTKSLFEQMNVGVLKYLE--NKTGVCKLELEPRRPADRPSILAWEQKNTVF-----LPEDLKSFYLTSDGFLLTWCVKIEN------GP-------VPVGRMYLNSVSKMMKFGGPANNT----LVNPSLAD-LDADSDA---------EDETSGTEKPTFDSRCKIFELDPCDGYGKVCLVFKENKTAPEYKKSADIVSKVYTSDYMTYGGTDPKI---EVWFLDRALRWHYIADSFTAYYRLMIMHLGLPQWQYAFTDIGL 231
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: R7V0Q4_CAPTE (SMI1_KNR4 domain-containing protein n=2 Tax=Capitella teleta TaxID=283909 RepID=R7V0Q4_CAPTE) HSP 1 Score: 92.0 bits (227), Expect = 3.870e-18 Identity = 75/269 (27.88%), Postives = 112/269 (41.64%), Query Frame = 1
Query: 4 KSSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRI-PLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITEN 807
+ SN+ +L F + LE + GV + +S+ + ++L WE + LP+DLR+F TS+G+ L W VK++ D + GR+ V + + RI P D + L + D IA A G D + F +D G+V LVY + P +R E+W D S RWH LA++F SY+R+M +HLG+ WQ F+ VGLSP E
Sbjct: 3 EDSNKGNYEKLTFGIMRSLE--KRAGVCDVKLSERQATDRSSLVAWEQ-----KHSCALPDDLRSFYLTSNGMFLKWNVKMN-------------DSRIPVGRLEVNSLDKLIRIGPCTTTDHANPSLF---LLDFIADSADESEKGNPHWD----------HRSRIFELDPCDGYGKVCLVYRNTAQGLPAQR-------------------------SEIWFLDRSLRWHPLAETFLSYYRMMLMHLGLPQWQYGFTAVGLSPQAEQ 213
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI0018D6FE88 (tubulin polyglutamylase complex subunit 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6FE88) HSP 1 Score: 89.7 bits (221), Expect = 7.600e-18 Identity = 68/244 (27.87%), Postives = 102/244 (41.80%), Query Frame = 1
Query: 79 GVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSPITENV 810
G+ I ++D + A + WE N LP+DL+ F TSDGL L+W+V+ D+ GR+ + +S +T+ L K S ++A A D D D F +D + +V LVY R P + +PEVW+ D + RWHFLA +F+ YFR+M +HLG+ WQ A++ VGLSP + +
Sbjct: 32 GICDITLADLQPAERHQVVSWEQRN-----SCMLPDDLKRFYLTSDGLLLTWSVRFD-------------DQLQSVGRMEINKISNVTK-------LAGNKAPSNANTPSLADVDYASDEEQCDEDTDVPAKPHFDTRSRIFELDPCRGIAKVCLVYRNTRPGSPAQ-------------------------HPEVWLLDRALRWHFLAHTFSQYFRMMLMHLGLPQWQLAYTDVGLSPQAKPI 225
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: A0A6J8B8K0_MYTCO (TPGS2 n=4 Tax=Mytilus TaxID=6548 RepID=A0A6J8B8K0_MYTCO) HSP 1 Score: 90.9 bits (224), Expect = 1.600e-17 Identity = 79/271 (29.15%), Postives = 120/271 (44.28%), Query Frame = 1
Query: 7 SSNQDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEV---------GRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLS 792
+ ++++ +L + +LE + GV I + A A+ +WE N G LPED + F T+DG L+W VK+ GP G++Y+ VS +TRI A ++ S ++ P LDL+ D + +A L S DS C++ GRV LV+ R + G+++ R EVW D S RWHFLA+SF +YFR+M +HLG+ WQ + +GLS
Sbjct: 8 AKTRNLLEQLNIGVIRNLE--KKTGVCKIELDQRSPADRHAVLMWEQRN-----GCFLPEDFKNFYLTTDGFKLTWNVKMDN------GP-------TPVGKLYINRVSQLTRI---AGNVASSHVN----------------PTLLDLEAD-SDNEDEATGLEKPSFDSRCKIYEMDPCDGYGRVCLVF---RENKTGYIDSQELFDGKHTSELIRFGGND--PKTEVWFLDRSLRWHFLAESFMAYFRLMLMHLGLPQWQYGITDIGLS 233
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI0018D5AFA2 (tubulin polyglutamylase complex subunit 2-like isoform X1 n=5 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5AFA2) HSP 1 Score: 89.4 bits (220), Expect = 5.170e-17 Identity = 71/260 (27.31%), Postives = 108/260 (41.54%), Query Frame = 1
Query: 16 QDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRDDTTGNRDAYDLAAFSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSP 795
+D+ +L + LE + G+ I ++D + A + WE R LP+DL+ F TSDGL L+W V+ D+ GR+ + +S +T+ L K S ++A A D D D F +D + +V LVY + P + +PEVW+ D + RWHFLA +F+ YFR+M +HLG+ WQ A++ VGLSP
Sbjct: 19 KDLFNQLTLGVVKSLE--KRAGICDITLADLQPAERHQVVSWEQ-----RSSCMLPDDLKRFYLTSDGLLLTWCVRFD-------------DQLQPVGRMEINKISNVTK-------LAGNKAPSNANTPSLADVDYASDEEQCDEDTDVPAKPHFDTRSRIFELDPCRGIAKVCLVYRNTKPGSPAQ-------------------------HPEVWLLDRALRWHFLAHTFSQYFRMMLMHLGLPQWQLAYTDVGLSP 226
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Match: UPI0003F0E051 (tubulin polyglutamylase complex subunit 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E051) HSP 1 Score: 88.6 bits (218), Expect = 8.460e-17 Identity = 70/272 (25.74%), Postives = 109/272 (40.07%), Query Frame = 1
Query: 16 QDIMGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKRLPEDLRAFLCTSDGLSLSWTVKLHGKGGEGGGPGGSSDREVVAGRIYVGGVSAITRIPLDADDLRSIKLSSRCVADAIAADAPAXXPGALDLDRD----------DTTGNRDAYDLAA--FSIDSACEVGRVALVYGVPRRSPPPRRRGSRSCSGENSRVTSRSAVEAWLVNPEVWIQDLSCRWHFLADSFTSYFRVMAVHLGVLGWQQAFSPVGLSP 795
+++ RL + LE + GV + + D K A + WE N LP+DL+ F T+DG+ L W +K G+ GR+ + +S + +KL ++ + P +D+D D D T +D + F +D G+V VY + P + +PE+W D S RWH+LAD+FT YFR+M +HLG+ WQ F+ +GLSP
Sbjct: 8 KEMFDRLTMGIVRSLE--KRPGVSDVRLLDRKPAERHIVVSWEQKN-----SCMLPDDLKRFYLTTDGMLLQWNIKFDEHVGQ-------------LGRMEINAMSNV------------VKLGGN--------NSSSNTPSLVDIDYDTDDEDSDGIVDNTAPTPHFDTRSRVFELDPCEGYGKVCFVYRDTKPGSPAQ-------------------------HPEIWFLDRSLRWHYLADTFTQYFRLMLMHLGLPQWQYTFTDIGLSP 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5220.12586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5220.12586.1 >prot_H-paniculata_contig5220.12586.1 ID=prot_H-paniculata_contig5220.12586.1|Name=mRNA_H-paniculata_contig5220.12586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp MGRLGFDFLAHLEAMRGKGVRSINISDSKQAPVAALTVWEDTNYPYRQGKback to top mRNA from alignment at H-paniculata_contig5220:1339..4696- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5220.12586.1 ID=mRNA_H-paniculata_contig5220.12586.1|Name=mRNA_H-paniculata_contig5220.12586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3358bp|location=Sequence derived from alignment at H-paniculata_contig5220:1339..4696- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5220:1339..4696- >mRNA_H-paniculata_contig5220.12586.1 ID=mRNA_H-paniculata_contig5220.12586.1|Name=mRNA_H-paniculata_contig5220.12586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig5220:1339..4696- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |