mRNA_H-paniculata_contig5218.12582.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5218.12582.1
Unique NamemRNA_H-paniculata_contig5218.12582.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5218.12582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5218contigH-paniculata_contig5218:12460..13392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size934
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930519.4937913-UTR-H-paniculata_contig5218:12459..128701622930519.4937913-UTR-H-paniculata_contig5218:12459..12870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5218 12460..12870 +
1691481328.9446602-UTR-H-paniculata_contig5218:12459..128701691481328.9446602-UTR-H-paniculata_contig5218:12459..12870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5218 12460..12870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930519.5165048-CDS-H-paniculata_contig5218:12870..133921622930519.5165048-CDS-H-paniculata_contig5218:12870..13392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5218 12871..13392 +
1691481328.9556372-CDS-H-paniculata_contig5218:12870..133921691481328.9556372-CDS-H-paniculata_contig5218:12870..13392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5218 12871..13392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5218.12582.1prot_H-paniculata_contig5218.12582.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5218 12871..13392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5218.12582.1

>prot_H-paniculata_contig5218.12582.1 ID=prot_H-paniculata_contig5218.12582.1|Name=mRNA_H-paniculata_contig5218.12582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MSPVVLELVVNGNHSNITNNTMSEMCKEVSCYTLTVTYLATALQRTLTWY
CREAASTKGSLATLWASCLRLPPAERHRISTLHNPGTPHFTANVFISCAE
MPQCVRRHSRPTNQSQSRPSLTKTKDLIFSRLPEIDFGWSTLIFVGNFFR
RAIHAFSLPKKDFYKMALESPKGS
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mRNA from alignment at H-paniculata_contig5218:12460..13392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5218.12582.1 ID=mRNA_H-paniculata_contig5218.12582.1|Name=mRNA_H-paniculata_contig5218.12582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at H-paniculata_contig5218:12460..13392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGGAGTGGTGCATGCGACGACATGGAGTCAAGAGCGAGTACCCACAGG
TGGTCACAGGGAACGCTGGTCCCACCGCTCGAAGAAAATAACCACAAGTA
CCATGGCTAGGTGTTGTAGAAGGTTTCGTTTATTCCTTCATTCGGCGATG
GACAAAGGAGACATGAGGACCGGTCAAGAAAGCGGTGTCGATGAGCAATA
CGAGAAAGGCCGATATTATTGAGGGCGTGTGAAAGACCCGACAAGCAGCT
GCACGGACGGACGACCACTGTAGTGAGCGAGCGGAGTTGCCAAGTAACCT
CATGCAGAAGCCTCCTTCCCCCTTTGGGTTTTCTCGATCCTTGAGGACGG
GGCGCTTCCCTACGCCCGTACGTTATTGTTGTAGAAGACAGCGACAGTGG
GTGCGGTACACATGTCACCAGTCGTTCTAGAGTTGGTAGTAAACGGCAAT
CACTCGAATATTACGAACAACACCATGTCAGAAATGTGTAAGGAGGTGAG
TTGCTACACTTTAACTGTTACTTATCTTGCTACAGCTTTACAGCGGACCT
TAACTTGGTATTGCAGAGAGGCTGCATCCACGAAAGGAAGCCTCGCTACA
TTATGGGCAAGCTGCCTTCGGCTGCCTCCGGCCGAACGCCACCGGATTTC
AACGCTGCACAACCCCGGCACACCACACTTCACTGCGAATGTTTTTATAT
CTTGTGCGGAAATGCCCCAATGTGTACGCAGACACAGCAGGCCGACGAAT
CAGTCACAATCGAGACCAAGTCTTACCAAGACGAAAGATCTGATTTTCAG
TCGATTGCCAGAAATCGATTTCGGATGGAGTACCCTTATTTTTGTTGGAA
ATTTTTTTCGGCGCGCCATTCACGCTTTCTCCTTGCCAAAAAAGGATTTC
TACAAAATGGCTCTAGAAAGTCCGAAAGGCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5218:12460..13392+

>mRNA_H-paniculata_contig5218.12582.1 ID=mRNA_H-paniculata_contig5218.12582.1|Name=mRNA_H-paniculata_contig5218.12582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig5218:12460..13392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCAGTCGTTCTAGAGTTGGTAGTAAACGGCAATCACTCGAATAT
TACGAACAACACCATGTCAGAAATGTGTAAGGAGGTGAGTTGCTACACTT
TAACTGTTACTTATCTTGCTACAGCTTTACAGCGGACCTTAACTTGGTAT
TGCAGAGAGGCTGCATCCACGAAAGGAAGCCTCGCTACATTATGGGCAAG
CTGCCTTCGGCTGCCTCCGGCCGAACGCCACCGGATTTCAACGCTGCACA
ACCCCGGCACACCACACTTCACTGCGAATGTTTTTATATCTTGTGCGGAA
ATGCCCCAATGTGTACGCAGACACAGCAGGCCGACGAATCAGTCACAATC
GAGACCAAGTCTTACCAAGACGAAAGATCTGATTTTCAGTCGATTGCCAG
AAATCGATTTCGGATGGAGTACCCTTATTTTTGTTGGAAATTTTTTTCGG
CGCGCCATTCACGCTTTCTCCTTGCCAAAAAAGGATTTCTACAAAATGGC
TCTAGAAAGTCCGAAAGGCTCTATGTCACCAGTCGTTCTAGAGTTGGTAG
TAAACGGCAATCACTCGAATATTACGAACAACACCATGTCAGAAATGTGT
AAGGAGGTGAGTTGCTACACTTTAACTGTTACTTATCTTGCTACAGCTTT
ACAGCGGACCTTAACTTGGTATTGCAGAGAGGCTGCATCCACGAAAGGAA
GCCTCGCTACATTATGGGCAAGCTGCCTTCGGCTGCCTCCGGCCGAACGC
CACCGGATTTCAACGCTGCACAACCCCGGCACACCACACTTCACTGCGAA
TGTTTTTATATCTTGTGCGGAAATGCCCCAATGTGTACGCAGACACAGCA
GGCCGACGAATCAGTCACAATCGAGACCAAGTCTTACCAAGACGAAAGAT
CTGATTTTCAGTCGATTGCCAGAAATCGATTTCGGATGGAGTACCCTTAT
TTTTGTTGGAAATTTTTTTCGGCGCGCCATTCACGCTTTCTCCTTGCCAA
AAAAGGATTTCTACAAAATGGCTCTAGAAAGTCCGAAAGGCTCT
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