prot_H-paniculata_contig5213.12577.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5213.12577.1
Unique Nameprot_H-paniculata_contig5213.12577.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1399
Homology
BLAST of mRNA_H-paniculata_contig5213.12577.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI)

HSP 1 Score: 395 bits (1015), Expect = 8.810e-110
Identity = 440/1071 (41.08%), Postives = 520/1071 (48.55%), Query Frame = 0
Query:   27 QVVFQLIAADESKTVSSSPILRPLASGPHVGVLRRLLGSIQLAWPMSTPPPIEVLEQHKVSEGTVRARACEVL---CYTYGAERSSA-------GSTPGRAGDSPTIG--GRLER-SHSSEARKIAELVPLVLSLAGT-LEGARCLRVMVGAKDGVGEAVQSAILREGGNRTTAVKGGXXXXAALGVGVVVYMLKAKKVEIRAAGASVLRTLVTXXXXXXXXXXAVGRGRSSSRSAHAPKTSLTSAVGRDSKSQSCRYFLERLHACGVRSEAICLLASLELFGDHLQQPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRHGGPL-----------------------------QASAEETSWGDGAPRCGLGEFTAQESEALSSVCSEALRALATDSLNGAAAKARCLSLLGDLALDPGCARTLFHGGAVPQMLLNAQGCRHLNEHAAAEPDADEDVGAAGEAFAAGKGNMGATECALDDSGGADRVLVGGXXXXXXXXXXXDLGEETAGSDDGQGSSASPTADDGEQQTRGQSAETATTEVAAEEQHGECEPTVAGSWKRQSRLRRRPVEVCRCRQAMRLLTRLVGGLPREAPAVVVRHSGLRSIVQLLEAAGEVSRASAPQGSXXXXXXXXCGVISAAVEAAAGGAFELFVAISEQARQRKELGSVPGLLESTSSYVVSKLVQEGKIGKGLREKVKSSVGFGSDAVNGIDVHSGASETTNIIAIAFRLLANLSYTDGARRRIMGFDGLVLAAAGLVASAADEIEHRSPGTGISSAGSSVVKGYTIEIAGEAAAALLHRLSTVLGAEGDEDQLFAAGEALSTAVHAVSKARKTSGYQAVKRLGGHGEQDVAEEKKEAGGDQFKSQVASIGGEAKMMGTHGLALEALSALLVLSWSDAANLEAAAAIDSVITDAALAASVLSLWRQGMRAPMTVGTVSDVGALPVSLGVACSRTLSSTALPFLSSVAHRPAGRSALVAADAAPAVLSVLLQGRGIGSD-----EDGLEGDIL----LSIAERAELLCLLCVLCASPVHRAAVRQSLL 1045
            QVVFQL+AAD +K+V SSP+LRPL  G H  VL+ LLG     W     P          +    RARAC+ L   C       SSA       G+  G  GDS   G  G +   S   +   +AE+ PLVL LAGT LEGARCLR M  A+ GVGEA Q+A+LR G      V G      A G+G +V ML +  VEIRAAGAS+LR LV                  ++   H P+    +A       + CR  LE LHACG RSEA+  L+S  LFG+  Q              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                    +A+     W  G    G   F AQESEALS VC EAL+ALATD+  G   KARCLSLL DLALDP CARTLF GGA+PQMLLNAQGC H++       D   D G           +  A+                 XXXXXXXXXXX   +  A      G S S                                 T AG+              CRCRQA RLL RLV GLP E PAVVVRHSGLRS+VQ+LE  G     +A +G+         G I  A EAA   A ELFVA+SEQ   R  L  +PGL  S SSY+VS                 SS   G D        S A E+      AFRLLANL++ D  RRR++  DGLVLA+A  +                                  AAAALL RLS VLGA+G E++L AAGEALS AV AVS A                          A G  F +  A            GLA EAL ALLVLSW+D+++L+AAAA+D  +TD+  A SV+SLWR+GM    + G     GAL            S TAL  +SS+A RP GR +LVAA AA AV+ V L  +G G D     E G    ++    LS++ER E++ LLCVLCASP HR AVR SL+
Sbjct: 1070 QVVFQLVAADAAKSVPSSPVLRPLGDGRHPAVLKGLLGPADFPWQGGIGP-----SARDSAVKAARARACDALRHACSELSPSSSSAPAAARDTGNPTGDGGDSAEAGPGGNVTAGSGKLDVEAVAEVFPLVLPLAGTTLEGARCLRAMFAARGGVGEAAQAAVLRRG------VVGDAAGAGAGGIGAIVAMLHSTYVEIRAAGASILRKLVFP----------------TAAPTHRPEGGGQAAAA---SIRPCRALLESLHACGGRSEALRSLSSFGLFGEQDQAAVPGGTLSVIDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAAEGLVGWNGG----GEEGFDAQESEALSGVCVEALQALATDNFTGPLEKARCLSLLADLALDPRCARTLFQGGAIPQMLLNAQGCTHVDLI-----DVHGDRGGXXXXXXXXXSDGRASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRVA-----VGVSGSV--------------------------------TTAGA------------VCCRCRQATRLLARLVRGLPGETPAVVVRHSGLRSVVQILED-GAAEAKAATEGTG--------GRIPTATEAAVREALELFVALSEQKPHRGALADLPGLARSASSYIVSATTASTS---------SSSPQAGED--------SSAEES------AFRLLANLAFADAPRRRVLELDGLVLASARALXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXAAAALLCRLSPVLGADGGEEELVAAGEALSAAVAAVSMA--------------------------AAGRDFTAATAG-----------GLASEALYALLVLSWADSSSLDAAAAVDGFVTDSRFADSVVSLWRRGMAPSASSG----FGAL------------SETALATMSSIAARPTGRKSLVAAGAASAVVDVALGRQGGGGDVAGDSEGGCSQTMMMAPQLSVSERGEIIRLLCVLCASPAHRGAVRSSLM 1964          
BLAST of mRNA_H-paniculata_contig5213.12577.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 3.000e-57
Identity = 203/476 (42.65%), Postives = 237/476 (49.79%), Query Frame = 0
Query:  580 CRCRQAMRLLTRLVGGLPREAPAVVVRHSGLRSIVQLLE-AAGEVSRASAPQGSXXXXXXXXCGVISAAVEAAAGGAFELFVAISEQARQRKELGSVPGLLESTSSYVVSKLVQEGKIGKGLREKVKSSVGFGSDAVNGIDVHSGASETTNIIAIAFRLLANLSYTDGARRRIMGFDGLVLAAA-GLVASAADEIEHRSPGTGISSAGSSVVKGYTIEIAGEAAAALLHRLSTVLGAEGDEDQLFAAGEALSTAVHAVSKARKTSGYQAVKRLGGHGEQDVAEEKKEAGGDQFKSQVASIGGEAKMMGTHGLALEALSALLVLSWSDAANLEAAAAIDSVITDAALAASVLSLWRQGMRAPMTVGTVSDVGALPVSLGVACSRTLSSTALPFLSSVAHRPAGRSALVAADAAPAVLSVLL--QGRG--IGSDEDGLEGDILL----SIAERAELLCLLCVLCASPVHRAAVRQSLL 1045
            CRCRQA RLL RLV GLP E PAVVVRHSGLRS+VQ+LE  A E   A+   G            I AA EAA   A ELFVA+SEQ   R  L  +PGL  S SSYVVS                 SS   G D        S A E+      AFRLLANL++ D  RRR++  DGLVLA+A  L                                   AAAALL RLS VLGAEG ED+L AAGEALS AV A ++   T    AV                                        GLA EAL ALLVLSW+D+ +L+ AAA+D  +TD+  A SV+SLWR+G  AP      S  GAL            S TAL  +SS+A RP GR +LVAA  A AV+ V L  QG G   G  E G    ++L    S++ER E++ LLCVLCASP HR AVR SL+
Sbjct: 1503 CRCRQATRLLARLVRGLPGETPAVVVRHSGLRSVVQILEDGAAEAKAAAGGTGRR----------IPAATEAAVREALELFVALSEQQPHRGALVDLPGLARSASSYVVSATTAS---------PASSSPRAGED--------SSAEES------AFRLLANLAFADAPRRRVLELDGLVLASARALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAALLCRLSPVLGAEGGEDELVAAGEALSAAVAAAAEGDVTDAATAV----------------------------------------GLASEALYALLVLSWADSRSLDVAAAVDGFVTDSRFADSVVSLWRRG-TAP---SASSGFGAL------------SETALVTMSSIAARPTGRQSLVAAGVASAVVDVALGQQGGGDAAGDGEGGCSQTMMLAPQLSVSERGEIIRLLCVLCASPAHRGAVRSSLI 1889          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5213.12577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT64_ECTSI8.810e-11041.08E3 ubiquitin-protein ligase Nedd-4, putative n=1 T... [more]
A0A6H5KQZ1_9PHAE3.000e-5742.65FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..1398
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5213contigH-paniculata_contig5213:2846..12392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5213.12577.1mRNA_H-paniculata_contig5213.12577.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5213 2590..13453 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5213.12577.1 ID=prot_H-paniculata_contig5213.12577.1|Name=mRNA_H-paniculata_contig5213.12577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1399bp
MLFTRFSRLMMRAILFSCLISWYVVRQVVFQLIAADESKTVSSSPILRPL
ASGPHVGVLRRLLGSIQLAWPMSTPPPIEVLEQHKVSEGTVRARACEVLC
YTYGAERSSAGSTPGRAGDSPTIGGRLERSHSSEARKIAELVPLVLSLAG
TLEGARCLRVMVGAKDGVGEAVQSAILREGGNRTTAVKGGGGGDAALGVG
VVVYMLKAKKVEIRAAGASVLRTLVTAAATTTTTIAAVGRGRSSSRSAHA
PKTSLTSAVGRDSKSQSCRYFLERLHACGVRSEAICLLASLELFGDHLQQ
PHHHLHHHHHEGFQQTEEEAWQRESREDGIVVLVAAVNCVAEEQAASSSS
SSSPRHGGPLQASAEETSWGDGAPRCGLGEFTAQESEALSSVCSEALRAL
ATDSLNGAAAKARCLSLLGDLALDPGCARTLFHGGAVPQMLLNAQGCRHL
NEHAAAEPDADEDVGAAGEAFAAGKGNMGATECALDDSGGADRVLVGGGG
DGDNGGGGGDLGEETAGSDDGQGSSASPTADDGEQQTRGQSAETATTEVA
AEEQHGECEPTVAGSWKRQSRLRRRPVEVCRCRQAMRLLTRLVGGLPREA
PAVVVRHSGLRSIVQLLEAAGEVSRASAPQGSGSGGDGDGCGVISAAVEA
AAGGAFELFVAISEQARQRKELGSVPGLLESTSSYVVSKLVQEGKIGKGL
REKVKSSVGFGSDAVNGIDVHSGASETTNIIAIAFRLLANLSYTDGARRR
IMGFDGLVLAAAGLVASAADEIEHRSPGTGISSAGSSVVKGYTIEIAGEA
AAALLHRLSTVLGAEGDEDQLFAAGEALSTAVHAVSKARKTSGYQAVKRL
GGHGEQDVAEEKKEAGGDQFKSQVASIGGEAKMMGTHGLALEALSALLVL
SWSDAANLEAAAAIDSVITDAALAASVLSLWRQGMRAPMTVGTVSDVGAL
PVSLGVACSRTLSSTALPFLSSVAHRPAGRSALVAADAAPAVLSVLLQGR
GIGSDEDGLEGDILLSIAERAELLCLLCVLCASPVHRAAVRQSLLSSASA
APRMRSVTATGSAGETRAGVTGSHVSGSGGSGSGGGGGGIMSADDSVASE
AAMEAHLVLLLGENPHTSWQCRSGVARLASLLGLSPILEVAIASPRVSPG
RQHGSVDAAPGRTLAAYPQQPSPSRNCLINPKTLSGNAPAKLPTVVVGAT
PKRSGFSATRSLSPPATPSPNSRGTRRRRSERNGRGLETGDGSRNATVHR
TVEGTVTPAIGTRADAFPFRTRDQASSPARRAPARSYSGENLDRMLNANN
VVVSDDRDGGREKTLADFAFYGSDRVGERDVSSANGGGSSGGGGAAASVR
HGDRRDRERDDDTIAVFCPRSDCARRVFVPKGFDLALVDCPHCRQPMR*
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