mRNA_H-paniculata_contig5213.12577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5213.12577.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI) HSP 1 Score: 395 bits (1015), Expect = 6.390e-108 Identity = 440/1071 (41.08%), Postives = 520/1071 (48.55%), Query Frame = 2
Query: 335 QVVFQLIAADESKTVSSSPILRPLASGPHVGVLRRLLGSIQLAWPMSTPPPIEVLEQHKVSEGTVRARACEVL---CYTYGAERSSA-------GSTPGRAGDSPTIG--GRLER-SHSSEARKIAELVPLVLSLAGT-LEGARCLRVMVGAKDGVGEAVQSAILREGGNRTTAVKGGXXXXAALGVGVVVYMLKAKKVEIRAAGASVLRTLVTXXXXXXXXXXAVGRGRSSSRSAHAPKTSLTSAVGRDSKSQSCRYFLERLHACGVRSEAICLLASLELFGDHLQQPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRHGGPL-----------------------------QASAEETSWGDGAPRCGLGEFTAQESEALSSVCSEALRALATDSLNGAAAKARCLSLLGDLALDPGCARTLFHGGAVPQMLLNAQGCRHLNEHAAAEPDADEDVGAAGEAFAAGKGNMGATECALDDSGGADRVLVGGXXXXXXXXXXXDLGEETAGSDDGQGSSASPTADDGEQQTRGQSAETATTEVAAEEQHGECEPTVAGSWKRQSRLRRRPVEVCRCRQAMRLLTRLVGGLPREAPAVVVRHSGLRSIVQLLEAAGEVSRASAPQGSXXXXXXXXCGVISAAVEAAAGGAFELFVAISEQARQRKELGSVPGLLESTSSYVVSKLVQEGKIGKGLREKVKSSVGFGSDAVNGIDVHSGASETTNIIAIAFRLLANLSYTDGARRRIMGFDGLVLAAAGLVASAADEIEHRSPGTGISSAGSSVVKGYTIEIAGEAAAALLHRLSTVLGAEGDEDQLFAAGEALSTAVHAVSKARKTSGYQAVKRLGGHGEQDVAEEKKEAGGDQFKSQVASIGGEAKMMGTHGLALEALSALLVLSWSDAANLEAAAAIDSVITDAALAASVLSLWRQGMRAPMTVGTVSDVGALPVSLGVACSRTLSSTALPFLSSVAHRPAGRSALVAADAAPAVLSVLLQGRGIGSD-----EDGLEGDIL----LSIAERAELLCLLCVLCASPVHRAAVRQSLL 3391
QVVFQL+AAD +K+V SSP+LRPL G H VL+ LLG W P + RARAC+ L C SSA G+ G GDS G G + S + +AE+ PLVL LAGT LEGARCLR M A+ GVGEA Q+A+LR G V G A G+G +V ML + VEIRAAGAS+LR LV ++ H P+ +A + CR LE LHACG RSEA+ L+S LFG+ Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +A+ W G G F AQESEALS VC EAL+ALATD+ G KARCLSLL DLALDP CARTLF GGA+PQMLLNAQGC H++ D D G + A+ XXXXXXXXXXX + A G S S T AG+ CRCRQA RLL RLV GLP E PAVVVRHSGLRS+VQ+LE G +A +G+ G I A EAA A ELFVA+SEQ R L +PGL S SSY+VS SS G D S A E+ AFRLLANL++ D RRR++ DGLVLA+A + AAAALL RLS VLGA+G E++L AAGEALS AV AVS A A G F + A GLA EAL ALLVLSW+D+++L+AAAA+D +TD+ A SV+SLWR+GM + G GAL S TAL +SS+A RP GR +LVAA AA AV+ V L +G G D E G ++ LS++ER E++ LLCVLCASP HR AVR SL+
Sbjct: 1070 QVVFQLVAADAAKSVPSSPVLRPLGDGRHPAVLKGLLGPADFPWQGGIGP-----SARDSAVKAARARACDALRHACSELSPSSSSAPAAARDTGNPTGDGGDSAEAGPGGNVTAGSGKLDVEAVAEVFPLVLPLAGTTLEGARCLRAMFAARGGVGEAAQAAVLRRG------VVGDAAGAGAGGIGAIVAMLHSTYVEIRAAGASILRKLVFP----------------TAAPTHRPEGGGQAAAA---SIRPCRALLESLHACGGRSEALRSLSSFGLFGEQDQAAVPGGTLSVIDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAAEGLVGWNGG----GEEGFDAQESEALSGVCVEALQALATDNFTGPLEKARCLSLLADLALDPRCARTLFQGGAIPQMLLNAQGCTHVDLI-----DVHGDRGGXXXXXXXXXSDGRASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRVA-----VGVSGSV--------------------------------TTAGA------------VCCRCRQATRLLARLVRGLPGETPAVVVRHSGLRSVVQILED-GAAEAKAATEGTG--------GRIPTATEAAVREALELFVALSEQKPHRGALADLPGLARSASSYIVSATTASTS---------SSSPQAGED--------SSAEES------AFRLLANLAFADAPRRRVLELDGLVLASARALXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXAAAALLCRLSPVLGADGGEEELVAAGEALSAAVAAVSMA--------------------------AAGRDFTAATAG-----------GLASEALYALLVLSWADSSSLDAAAAVDGFVTDSRFADSVVSLWRRGMAPSASSG----FGAL------------SETALATMSSIAARPTGRKSLVAAGAASAVVDVALGRQGGGGDVAGDSEGGCSQTMMMAPQLSVSERGEIIRLLCVLCASPAHRGAVRSSLM 1964
BLAST of mRNA_H-paniculata_contig5213.12577.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE) HSP 1 Score: 230 bits (587), Expect = 6.930e-57 Identity = 203/476 (42.65%), Postives = 237/476 (49.79%), Query Frame = 2
Query: 1994 CRCRQAMRLLTRLVGGLPREAPAVVVRHSGLRSIVQLLE-AAGEVSRASAPQGSXXXXXXXXCGVISAAVEAAAGGAFELFVAISEQARQRKELGSVPGLLESTSSYVVSKLVQEGKIGKGLREKVKSSVGFGSDAVNGIDVHSGASETTNIIAIAFRLLANLSYTDGARRRIMGFDGLVLAAA-GLVASAADEIEHRSPGTGISSAGSSVVKGYTIEIAGEAAAALLHRLSTVLGAEGDEDQLFAAGEALSTAVHAVSKARKTSGYQAVKRLGGHGEQDVAEEKKEAGGDQFKSQVASIGGEAKMMGTHGLALEALSALLVLSWSDAANLEAAAAIDSVITDAALAASVLSLWRQGMRAPMTVGTVSDVGALPVSLGVACSRTLSSTALPFLSSVAHRPAGRSALVAADAAPAVLSVLL--QGRG--IGSDEDGLEGDILL----SIAERAELLCLLCVLCASPVHRAAVRQSLL 3391
CRCRQA RLL RLV GLP E PAVVVRHSGLRS+VQ+LE A E A+ G I AA EAA A ELFVA+SEQ R L +PGL S SSYVVS SS G D S A E+ AFRLLANL++ D RRR++ DGLVLA+A L AAAALL RLS VLGAEG ED+L AAGEALS AV A ++ T AV GLA EAL ALLVLSW+D+ +L+ AAA+D +TD+ A SV+SLWR+G AP S GAL S TAL +SS+A RP GR +LVAA A AV+ V L QG G G E G ++L S++ER E++ LLCVLCASP HR AVR SL+
Sbjct: 1503 CRCRQATRLLARLVRGLPGETPAVVVRHSGLRSVVQILEDGAAEAKAAAGGTGRR----------IPAATEAAVREALELFVALSEQQPHRGALVDLPGLARSASSYVVSATTAS---------PASSSPRAGED--------SSAEES------AFRLLANLAFADAPRRRVLELDGLVLASARALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAALLCRLSPVLGAEGGEDELVAAGEALSAAVAAAAEGDVTDAATAV----------------------------------------GLASEALYALLVLSWADSRSLDVAAAVDGFVTDSRFADSVVSLWRRG-TAP---SASSGFGAL------------SETALVTMSSIAARPTGRQSLVAAGVASAVVDVALGQQGGGDAAGDGEGGCSQTMMLAPQLSVSERGEIIRLLCVLCASPAHRGAVRSSLI 1889 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5213.12577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5213.12577.1 >prot_H-paniculata_contig5213.12577.1 ID=prot_H-paniculata_contig5213.12577.1|Name=mRNA_H-paniculata_contig5213.12577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1399bp MLFTRFSRLMMRAILFSCLISWYVVRQVVFQLIAADESKTVSSSPILRPLback to top mRNA from alignment at H-paniculata_contig5213:2590..13453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5213.12577.1 ID=mRNA_H-paniculata_contig5213.12577.1|Name=mRNA_H-paniculata_contig5213.12577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10864bp|location=Sequence derived from alignment at H-paniculata_contig5213:2590..13453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5213:2590..13453+ >mRNA_H-paniculata_contig5213.12577.1 ID=mRNA_H-paniculata_contig5213.12577.1|Name=mRNA_H-paniculata_contig5213.12577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8394bp|location=Sequence derived from alignment at H-paniculata_contig5213:2590..13453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |