mRNA_H-paniculata_contig52098.12569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig52098.12569.1
Unique Name	mRNA_H-paniculata_contig52098.12569.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5L617_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L617_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.470e-28
Identity = 59/139 (42.45%), Postives = 91/139 (65.47%), Query Frame = 1

Query:    1 CMTNENVRTLVTNTVSPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVAR 417
            C+  E+++T+  +  SPS+A+R L DHF PL+ +QI + E KL +LR+   ++P +FF+ ++ET+GVL ML VKK+DR++C +ML GL H+Y  LR  L +        IE  VR+RYL+L  Q   G ++   AL++R
Sbjct:   82 CLKKESLKTMARHAGSPSKAFRVLKDHFLPLSQSQIRVQEEKLKSLRMRSNENPSIFFTSMRETLGVLQMLEVKKDDREVCNLMLEGLSHEYKTLRETLVVFCPNEPSFIETKVRERYLDLLTQP--GPKKHSVALMSR 218

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.820e-28
Identity = 60/139 (43.17%), Postives = 92/139 (66.19%), Query Frame = 1

Query:    1 CMTNENVRTLVTNTVSPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVAR 417
            C+  E+++T+  +  SPS+A+R L DHF PL+ +QI + E KL +LR+   ++P +FF+ ++ET+GVL ML VKKEDR++C +ML GL H+Y  LR  L +    +   IE  VR+RYL+L  Q   G ++   AL++R
Sbjct:    9 CLKKESLKTMARHAGSPSKAFRVLKDHFLPLSQSQIRVQEEKLKSLRMRSNENPSIFFTSMRETLGVLQMLEVKKEDREVCNLMLGGLSHEYKTLRETLVVFCPNDPSFIETKVRERYLDLLTQP--GPKKHSVALMSR 145

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.510e-27
Identity = 59/139 (42.45%), Postives = 92/139 (66.19%), Query Frame = 1

Query:    1 CMTNENVRTLVTNTVSPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVAR 417
            C+  E+++T+  +  SPS+A+R L DHF PL+ +QI + E KL +LR+   ++P +FF+ ++ET+GVL ML VKK+DR++C +ML GL H+Y  LR  L +    +   IE  VR+RYL+L  Q   G ++   AL++R
Sbjct:    9 CLKKESLKTMARHAGSPSKAFRVLKDHFLPLSQSQIRVQEEKLKSLRMRSNENPSIFFTSMRETLGVLQMLEVKKDDREVCNLMLEGLSHEYKTLRETLVVFCPNDPSFIETKVRERYLDLLTQP--GPKKHSVALMSR 145

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.700e-27
Identity = 59/143 (41.26%), Postives = 93/143 (65.03%), Query Frame = 1

Query:    1 CMTNENVRTLVTNTVSPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVARVGEK 429
            C+  ++++T+  +  SPS+A++ L DHF PL+ +QI + E+KL +LR+   ++P  FF+ ++ET+G+L ML VKKEDR++C +ML GL H+Y  LR  L +    +   IE  VR+RYL+L  Q   G ++   ALV+R   K
Sbjct:  176 CLKKDSLKTMARHAGSPSKAFQVLKDHFLPLSQSQIRVQENKLKSLRMRTNENPSTFFASMRETLGILQMLEVKKEDREVCTLMLEGLSHEYKTLRETLVVFCPNDPAFIETKVRERYLDLQTQ--TGTKKHSVALVSRAERK 316

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5KKA3_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKA3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.120e-26
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1

Query:   46 SPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVARVGEKGKGKLR 447
            SP +A+RAL DHF PL+ +QI + E KL +LR+   ++P  FF+ ++ET+ VL ML +KK+DR +C +ML GL  +Y  LR  L +  S +   IE  VR+RYL+L  QG   KQ S  ALV+R  E+ KG ++
Sbjct:   26 SPFKAFRALKDHFLPLSQSQIRVQEEKLKSLRMRSNENPATFFASIRETLDVLQMLEIKKDDRGVCNLMLEGLSPEYKTLRETLVVFCSNDPSFIETKVRERYLDLLAQGGSKKQ-SSVALVSRP-ERKKGSIK 157

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BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.180e-25
Identity = 56/124 (45.16%), Postives = 83/124 (66.94%), Query Frame = 1

Query:   46 SPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVAR 417
            SPS+A+R L DHF PL+ +QI + E KL +LR+   ++P +FF+ ++ET+GVL ML VKK+DR++C +ML GL H+Y  LR  L +    +   IE  VR+RYL+L  Q   G ++   AL++R
Sbjct:    7 SPSKAFRVLKDHFLPLSQSQIRVQEEKLKSLRMRSNENPSIFFTSMRETLGVLQMLEVKKDDREVCNLMLEGLSHEYKTLREPLVVFCPNDPSFIETKVRERYLDLLTQP--GPKKHSVALMSR 128

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5L0M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.490e-22
Identity = 40/78 (51.28%), Postives = 60/78 (76.92%), Query Frame = 1

Query:   46 SPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYD 279
            SPS+A+R L DHF PL+ +QI + E KL +LR+   ++P +FF+ ++ET+GVL ML VKK+DR++C +ML GL H+Y+
Sbjct:    7 SPSKAFRVLKDHFLPLSQSQIRVQEEKLKSLRMRSNENPSIFFTSMRETLGVLQMLEVKKDDREVCNLMLEGLSHEYN 84

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.900e-21
Identity = 47/114 (41.23%), Postives = 74/114 (64.91%), Query Frame = 1

Query:    1 CMTNENVRTLVTNTVSPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHV 342
            C+  ++++ +  +  SP +A+RAL DHF PL+ +QI + E KL +L +   ++P  FF+ ++ET+GVL MLGVKK+DR++C +ML GL  +Y  LR  L +  S +   IE  V
Sbjct:    9 CLKKDSLKNMARHAGSPFKAFRALKDHFLPLSQSQIRVQEEKLKSLSMRSNENPTTFFASIRETLGVLQMLGVKKDDREVCNLMLEGLSPEYKTLREILVVFCSNDPSFIETKV 122

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5JXJ6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.030e-14
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 1

Query:  142 LNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVARVGEK 429
            +   ++P  FF+ ++ET+GVL ML VKKEDR++C +ML GL H+Y  LR  L +    +   IE +VR+RYL+L  Q   G ++   ALV+R   K
Sbjct:    1 MRTNENPSTFFASMRETLGVLQMLKVKKEDREVCTLMLEGLFHEYKTLRETLVVFCPNDPAFIETNVRERYLDLQTQ--TGAKKHSAALVSRAERK 94

[Close]

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Match: A0A6H5L4Z3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.590e-13
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 1

Query:  142 LNQGQDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRLPHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVAR 417
            +   ++P +FF+ ++ET+GVL ML VKK+DR++C +ML GL H+Y  LR  L +        IE  VR+RYL+L  Q   G ++   AL++R
Sbjct:    1 MRSNENPSIFFTSMRETLGVLQMLEVKKDDREVCNLMLEGLSHEYKTLRETLVVFCPNEPSFIETKVRERYLDLLTQP--GPKKHSVALMSR 90

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig52098.12569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
A0A6H5L617_9PHAE	1.470e-28	42.45	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KHE8_9PHAE	5.820e-28	43.17	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K622_9PHAE	1.510e-27	42.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2M6_9PHAE	3.700e-27	41.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKA3_9PHAE	2.120e-26	45.52	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5LDZ0_9PHAE	7.180e-25	45.16	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L0M3_9PHAE	1.490e-22	51.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRL9_9PHAE	5.900e-21	41.23	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JXJ6_9PHAE	3.030e-14	42.71	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L4Z3_9PHAE	3.590e-13	41.30	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig52098	contig	H-paniculata_contig52098:751..1197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	447
Cds size	444
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930517.9078157-UTR-H-paniculata_contig52098:750..753	1622930517.9078157-UTR-H-paniculata_contig52098:750..753	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig52098 751..753 +
1691481328.221662-UTR-H-paniculata_contig52098:750..753	1691481328.221662-UTR-H-paniculata_contig52098:750..753	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig52098 751..753 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930517.9314008-CDS-H-paniculata_contig52098:753..1197	1622930517.9314008-CDS-H-paniculata_contig52098:753..1197	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig52098 754..1197 +
1691481328.2318432-CDS-H-paniculata_contig52098:753..1197	1691481328.2318432-CDS-H-paniculata_contig52098:753..1197	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig52098 754..1197 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig52098.12569.1	prot_H-paniculata_contig52098.12569.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig52098 754..1197 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig52098:751..1197+
coding sequence from alignment at H-paniculata_contig52098:751..1197+

protein sequence of mRNA_H-paniculata_contig52098.12569.1

>prot_H-paniculata_contig52098.12569.1 ID=prot_H-paniculata_contig52098.12569.1|Name=mRNA_H-paniculata_contig52098.12569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
MTNENVRTLVTNTVSPSQAWRALNDHFFPLTDAQINLYEHKLLNLRLNQG
QDPRVFFSEVKETVGVLLMLGVKKEDRQICYVMLSGLPHKYDVLRRNLRL
PHSRNKEAIERHVRDRYLELTIQGKIGKQRSGQALVARVGEKGKGKLR

mRNA from alignment at H-paniculata_contig52098:751..1197+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig52098.12569.1 ID=mRNA_H-paniculata_contig52098.12569.1|Name=mRNA_H-paniculata_contig52098.12569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig52098:751..1197+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTATGACTAATGAGAATGTTCGAACACTGGTAACTAATACTGTATCCCC
CAGCCAGGCGTGGCGTGCTTTGAACGATCATTTCTTTCCTTTAACTGATG
CTCAAATCAATCTGTACGAGCACAAGCTTTTGAACCTGAGGTTGAACCAA
GGACAGGACCCTCGCGTTTTCTTCTCCGAAGTAAAAGAGACTGTTGGGGT
ACTACTCATGCTAGGCGTCAAGAAGGAGGATAGGCAAATATGTTATGTGA
TGCTTAGTGGGCTACCACATAAGTACGACGTTCTTCGTCGAAATCTGAGA
CTTCCTCACTCAAGAAACAAGGAAGCAATAGAAAGACATGTGAGGGATAG
GTACTTAGAATTAACCATACAGGGCAAAATTGGTAAGCAAAGAAGTGGCC
AAGCTTTAGTAGCCAGGGTCGGCGAGAAGGGGAAAGGCAAACTCAGA

Coding sequence (CDS) from alignment at H-paniculata_contig52098:751..1197+

>mRNA_H-paniculata_contig52098.12569.1 ID=mRNA_H-paniculata_contig52098.12569.1|Name=mRNA_H-paniculata_contig52098.12569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig52098:751..1197+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAATGAGAATGTTCGAACACTGGTAACTAATACTGTATCCCCCAG
CCAGGCGTGGCGTGCTTTGAACGATCATTTCTTTCCTTTAACTGATGCTC
AAATCAATCTGTACGAGCACAAGCTTTTGAACCTGAGGTTGAACCAAGGA
CAGGACCCTCGCGTTTTCTTCTCCGAAGTAAAAGAGACTGTTGGGGTACT
ACTCATGCTAGGCGTCAAGAAGGAGGATAGGCAAATATGTTATGTGATGC
TTAGTGGGCTACCACATAAGTACGACGTTCTTCGTCGAAATCTGAGACTT
CCTCACTCAAGAAACAAGGAAGCAATAGAAAGACATGTGAGGGATAGGTA
CTTAGAATTAACCATACAGGGCAAAATTGGTAAGCAAAGAAGTGGCCAAG
CTTTAGTAGCCAGGGTCGGCGAGAAGGGGAAAGGCAAACTCAGAATGACT
AATGAGAATGTTCGAACACTGGTAACTAATACTGTATCCCCCAGCCAGGC
GTGGCGTGCTTTGAACGATCATTTCTTTCCTTTAACTGATGCTCAAATCA
ATCTGTACGAGCACAAGCTTTTGAACCTGAGGTTGAACCAAGGACAGGAC
CCTCGCGTTTTCTTCTCCGAAGTAAAAGAGACTGTTGGGGTACTACTCAT
GCTAGGCGTCAAGAAGGAGGATAGGCAAATATGTTATGTGATGCTTAGTG
GGCTACCACATAAGTACGACGTTCTTCGTCGAAATCTGAGACTTCCTCAC
TCAAGAAACAAGGAAGCAATAGAAAGACATGTGAGGGATAGGTACTTAGA
ATTAACCATACAGGGCAAAATTGGTAAGCAAAGAAGTGGCCAAGCTTTAG
TAGCCAGGGTCGGCGAGAAGGGGAAAGGCAAACTCAGA