mRNA_H-paniculata_contig52063.12567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52063.12567.1
Unique NamemRNA_H-paniculata_contig52063.12567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A8F0F7H1_9PHAE (Chaperonin GroEL n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7H1_9PHAE)

HSP 1 Score: 657 bits (1696), Expect = 1.580e-234
Identity = 347/373 (93.03%), Postives = 361/373 (96.78%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVEDKIE 1190
            +IGSMIAKAL IVGRDGIISLEES +TFTEL ITEGMRLDKGFISPYFITNPEKAE EYENP+ILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIV VVAIRAPGFGDFRKSLLEDIAILT GTLI EELGLRLD+V LTLLG+ASRII+TKES+TLIT+GN ENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLS PL+LW+++NLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESG IEFGYNAEIN+FGDMFSYG+VDPAKVTRSALQNAISIASMILTTECIVV DKIE
Sbjct:  138 QIGSMIAKALNIVGRDGIISLEESNNTFTELAITEGMRLDKGFISPYFITNPEKAEVEYENPFILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVNVVAIRAPGFGDFRKSLLEDIAILTGGTLITEELGLRLDSVELTLLGEASRIIITKESSTLITEGNSENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSPPLKLWARQNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGVIEFGYNAEINKFGDMFSYGIVDPAKVTRSALQNAISIASMILTTECIVVSDKIE 510          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: D1GJF9_FUCVE (Chaperonin GroEL, chloroplastic n=50 Tax=Phaeophyceae TaxID=2870 RepID=D1GJF9_FUCVE)

HSP 1 Score: 597 bits (1538), Expect = 3.160e-210
Identity = 309/371 (83.29%), Postives = 342/371 (92.18%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVEDK 1184
            EIG+MIAKALK VG DGIISLEES +TFTEL IT+GMRL+KGFISPYFITNPEK E EY+NP+ILITNKKLTLVQQDL+PILEKVA TK PLLIIAEDIEKEALSTLVLNKLRGIV VVAIRAP FGDFRK LLEDIAILT GTLI EELGLRLDNV L +LGKASRIIVTK+STT+IT+GN++NIKNRC+QLKKQI   +S YDIEK+KDRIAKLSGG+AVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGA LTHLS  L+LW+++NLKDDQLIGAYILA+SIKEPLKRIA+NTG NG VI +++E  + EFGYNAEIN+FG+MF+YG+VDPAKVTRSALQNAISIASMILTTECI+V +K
Sbjct:  156 EIGTMIAKALKTVGSDGIISLEESNNTFTELSITQGMRLEKGFISPYFITNPEKGEVEYQNPFILITNKKLTLVQQDLIPILEKVAVTKTPLLIIAEDIEKEALSTLVLNKLRGIVNVVAIRAPSFGDFRKYLLEDIAILTHGTLITEELGLRLDNVELDVLGKASRIIVTKDSTTIITEGNRDNIKNRCDQLKKQIAMKESVYDIEKIKDRIAKLSGGVAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGATLTHLSTSLKLWAKQNLKDDQLIGAYILADSIKEPLKRIADNTGANGGVIADLLEERNFEFGYNAEINKFGNMFNYGIVDPAKVTRSALQNAISIASMILTTECIIVSNK 526          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A141BSB8_9PHAE (Chaperonin GroEL, chloroplastic n=7 Tax=Sargassum TaxID=3015 RepID=A0A141BSB8_9PHAE)

HSP 1 Score: 594 bits (1531), Expect = 3.660e-209
Identity = 309/371 (83.29%), Postives = 340/371 (91.64%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVEDK 1184
            EIGSMI KALK VGR+GIISLEES +T  EL ITEGM+L+KGFISPYFITN EK E EYENP+ILITNKKLTLVQQDL+PILEKVAFTK+PLLIIAEDIEKEALSTLVLNKLRGI+ VVAIRAPGFGDFRK LLEDIAILT GTLI+E+LGLRLDN+ L LLGKASRIIVTK+STT+IT GN +NIK RC+QLKKQI   +S YDIEK+KDRIAKLSGGIA+I+VGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGA LTHLS PL+LW+++NL DDQLIGAYILA+SIK+PLKRIA NTGKNGSVIT++VE    EFGYNAEIN+FGDMF +G+VDPAKVTRSALQNAISIASMILTTECIVV +K
Sbjct:  156 EIGSMITKALKTVGREGIISLEESNNTSIELSITEGMKLEKGFISPYFITNSEKGEVEYENPFILITNKKLTLVQQDLIPILEKVAFTKKPLLIIAEDIEKEALSTLVLNKLRGIINVVAIRAPGFGDFRKYLLEDIAILTQGTLISEDLGLRLDNIELNLLGKASRIIVTKDSTTIITDGNNDNIKTRCDQLKKQISMKESLYDIEKIKDRIAKLSGGIALIRVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAALTHLSTPLKLWAKQNLTDDQLIGAYILADSIKDPLKRIAINTGKNGSVITDLVEEKYFEFGYNAEINQFGDMFKFGIVDPAKVTRSALQNAISIASMILTTECIVVSNK 526          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A2I4Q2B6_9PHAE (Chaperonin GroEL, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2B6_9PHAE)

HSP 1 Score: 589 bits (1519), Expect = 2.520e-207
Identity = 306/374 (81.82%), Postives = 344/374 (91.98%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVV-EDKIE 1190
            EIG MIA+AL IVGRDGIISLEES +TFTEL ITEGMRLDKGFISPYFIT+PEKAE +YE P+ILITNK+LTLVQQDL+P+LEKVA TKRPLLIIAEDIEKEALSTLVLNKLRGI+ VVAIRAPGFGDFR++LLEDIAILT GTLI E+LGL+L+N+ LTLLG+AS+IIV K+ST +IT  N ENI+NRCEQLKKQII S+SSYD EKLKDR+AKLSGGIA+IKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGA LTH S  L+LW+++NLK+DQLIGAYILAE+I EPLK+IAENTGKNGSVI E++   + EFGYNAEINEFG+MF YG+VDPAKVTRSALQNA+SIASMILTTECIVV E+K+E
Sbjct:  156 EIGKMIAEALNIVGRDGIISLEESNNTFTELNITEGMRLDKGFISPYFITDPEKAEVQYEKPFILITNKRLTLVQQDLIPVLEKVAITKRPLLIIAEDIEKEALSTLVLNKLRGIIPVVAIRAPGFGDFRQALLEDIAILTRGTLITEDLGLKLENIELTLLGEASKIIVAKDSTVIITNDNTENIRNRCEQLKKQIIISESSYDTEKLKDRVAKLSGGIAIIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGATLTHFSTQLKLWAKQNLKEDQLIGAYILAEAIIEPLKKIAENTGKNGSVIVEMLGDQNFEFGYNAEINEFGNMFDYGIVDPAKVTRSALQNAVSIASMILTTECIVVTENKVE 529          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A8E5XRF2_9PHAE (Chaperonin GroEL, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRF2_9PHAE)

HSP 1 Score: 572 bits (1474), Expect = 1.610e-200
Identity = 295/370 (79.73%), Postives = 332/370 (89.73%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVED 1181
            EIGSMIA ALK +GRDGIISLEE T+TF EL ITEGMRL+KGFISPYF+TNPE++E EYENP+ILIT+KKLTLV QDL+P+LEKVA TKRPLLIIAEDIEKEALSTLVLNKLRGI+ VVAIRAPGFG  RKSLLEDIAILT GTL+ EE GL+LD++ L LLGKASRI +TK+STT+IT+GN+  IKNRCEQLKKQ+ TS+SSYD EKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGG+ LTH S PLRLW+++NL+ DQLIGAYILA++IKEPLKRIAENTGKNGS+IT+ +E    + GYNAE N FG++F  GVVDPAKVTRSALQN+ SIA MILTTECI+V D
Sbjct:  157 EIGSMIALALKTIGRDGIISLEEGTNTFIELTITEGMRLEKGFISPYFVTNPERSEVEYENPFILITDKKLTLVHQDLIPVLEKVANTKRPLLIIAEDIEKEALSTLVLNKLRGIIPVVAIRAPGFGSLRKSLLEDIAILTGGTLVTEETGLKLDSIELELLGKASRITLTKDSTTIITEGNQLAIKNRCEQLKKQLATSESSYDSEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGSTLTHFSLPLRLWAKQNLQGDQLIGAYILADAIKEPLKRIAENTGKNGSIITQTIEESSFDIGYNAETNVFGNIFEQGVVDPAKVTRSALQNSTSIAGMILTTECIIVSD 526          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A1I9LVQ1_9PHAE (Chaperonin GroEL, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVQ1_9PHAE)

HSP 1 Score: 565 bits (1457), Expect = 6.360e-198
Identity = 296/372 (79.57%), Postives = 331/372 (88.98%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVEDKI 1187
            E+G MIA ALK VGRDGIISLEES +TF ++ I++GMRLDKGFISPYFITN EK E EYENP+ILITNKKLTLVQQDL+P+LEKVA T RPLLIIAEDIEKEALSTLVLNKLRGIV VVAIRAPGFGD RK+LLEDIAILT GTLI E+LGL L+ + L LLG+ASRIIVTK+ TT+ITK N  +I+NRCEQLKKQI T+   Y++E+LKDRIAKLSGGIA+IKVGAVTETE+K+KKLRLEDAINATRAAVEEGIIPGGGA LTHLS PL+LW+++NLKDDQLIGAYILA+SIKEPLKRIAEN GKNGSVI ++VE    EFGYNAE NEF +MF  G+VDPAKVTRSALQNAISIA MILTTECIVV +KI
Sbjct:  156 ELGFMIAHALKCVGRDGIISLEESNTTFIDIAISDGMRLDKGFISPYFITNAEKGEVEYENPFILITNKKLTLVQQDLIPVLEKVAPTHRPLLIIAEDIEKEALSTLVLNKLRGIVNVVAIRAPGFGDLRKALLEDIAILTGGTLITEDLGLSLEKIELDLLGQASRIIVTKDETTIITKSNVNDIRNRCEQLKKQIATNYIIYEVEQLKDRIAKLSGGIAIIKVGAVTETEIKEKKLRLEDAINATRAAVEEGIIPGGGATLTHLSTPLKLWAKQNLKDDQLIGAYILADSIKEPLKRIAENAGKNGSVIIDLVEEKSFEFGYNAETNEFVNMFESGIVDPAKVTRSALQNAISIAGMILTTECIVVTNKI 527          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: B7T225_VAULI (Chaperonin GroEL, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T225_VAULI)

HSP 1 Score: 516 bits (1330), Expect = 1.120e-178
Identity = 265/371 (71.43%), Postives = 321/371 (86.52%), Query Frame = 3
Query:   69 AEIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVED 1181
            +EIG+MIA AL+ VGRDGIISLEE TS  TEL ITEGMR DKGFISPYF+TNPE+ E EYEN +ILIT+KK+TLVQQDL+PILEK+A TKRPLLII+EDIEKEAL+TLVLNKLR IV VVA+RAPGFGD RKSLLEDIAILT+GTLI E+ GL+L+N+ L LLGKA +I+V K++TT++++GN +NI  RCEQL+K I +++S Y+ EKL+DR+AKL+GGIAVIKVGAVTETEMKDKKLRLEDAINAT+AAVEEGI+PGGG  L HL+  L+ WS+ NLK+D+L+GA ILA+SI EPL RI+EN GKNG +I E V+  + E+GYNA +N+F +MF  G++DPAKVTRSALQNA SIA MILTTECIVV++
Sbjct:  155 SEIGNMIADALEQVGRDGIISLEEGTSISTELEITEGMRFDKGFISPYFVTNPERIEVEYENCFILITDKKITLVQQDLIPILEKIAPTKRPLLIISEDIEKEALATLVLNKLRNIVNVVAVRAPGFGDSRKSLLEDIAILTEGTLITEDTGLKLENINLELLGKARKILVKKDNTTIVSQGNNKNITLRCEQLRKLISSTESLYEKEKLQDRVAKLAGGIAVIKVGAVTETEMKDKKLRLEDAINATKAAVEEGIVPGGGTLLVHLAESLKNWSKANLKEDELVGASILAKSILEPLNRISENAGKNGLMIIETVQKNNFEYGYNASLNKFENMFESGIIDPAKVTRSALQNASSIAGMILTTECIVVDN 525          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A7S6U9T2_9STRA (Chaperonin GroEL, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9T2_9STRA)

HSP 1 Score: 499 bits (1285), Expect = 7.980e-172
Identity = 254/373 (68.10%), Postives = 318/373 (85.25%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKEN-IKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIV-ESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVEDK 1184
             +G +IA A++ VGRDGIISLEE+  T T+++ITEGM+LDKG++SPYFITNPEKA+ +YENPYILIT++KLT+VQ+DLVP+LEK+A TKRPLLIIAEDIEKE L+TLVLNKLRGIV VVAIRAPGFGDFRK LLEDIA+LT G LI EE GLRL N+ +  LG+A R+IVT+E TT+I++ N  + I  RCE LK+Q+  ++S+Y+ EK +DRIAKL+GGIA+IKVGAVTETE+KDKKLRLEDAINAT+AAVEEGI+PGGG    H++  LRLW++ NLK+D+L+GAYI+AE+I +P KRI EN+GKN  VI   + E+G +E GY+ E NE+G+MFS+G++DPAKV+RSALQNA SIA MILTTECIVVE+K
Sbjct:  156 SVGKLIANAIERVGRDGIISLEEAKGTKTQMLITEGMKLDKGYLSPYFITNPEKAKVDYENPYILITDQKLTMVQRDLVPVLEKIAATKRPLLIIAEDIEKEILATLVLNKLRGIVNVVAIRAPGFGDFRKLLLEDIAVLTGGVLITEEAGLRLANMEMDWLGQARRVIVTREDTTIISELNDNSKIVKRCESLKRQLAMANSAYEEEKFRDRIAKLTGGIAIIKVGAVTETELKDKKLRLEDAINATKAAVEEGIVPGGGTTFVHIAEKLRLWAKTNLKNDELVGAYIIAEAILQPFKRIIENSGKNSGVILGFLQENGSLETGYDVENNEYGNMFSFGIIDPAKVSRSALQNAASIAGMILTTECIVVENK 528          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A1Z8UKY4_9PROT (Chaperonin GroEL n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1Z8UKY4_9PROT)

HSP 1 Score: 490 bits (1262), Expect = 2.610e-168
Identity = 251/370 (67.84%), Postives = 303/370 (81.89%), Query Frame = 3
Query:   72 EIGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVED 1181
            EIG MIA AL  VG+DG+ISLEE  ST  +L I+EGMR DKGFISPYFITNPE+ E   ENPYILIT+KK+TLV+QDL+PILE+VA TKRPLLIIA D+EKEAL+TL+LNKLR I+ VVA+RAP FG  RK +LEDIAIL+DG LI ++ GL L+NV LT LG+A R++VTK+ TT+I +G ++ +K  CE L+KQI  SD +Y  E+L+DRIAKLSGG+AVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGI+PGGG    HL+  L+ W++ NL++D+LIGA IL ++I  PL+RIAEN GKN  +I E +E GD  FGYNA  + FGDMF +G+VDPAKV+RSALQNA SIA MILTTECIVVE+
Sbjct:  157 EIGDMIASALDKVGKDGVISLEEGKSTTIDLEISEGMRFDKGFISPYFITNPERMECVLENPYILITDKKITLVKQDLIPILEQVARTKRPLLIIAADVEKEALTTLILNKLRNIINVVAVRAPAFGALRKPILEDIAILSDGQLITDDTGLSLENVDLTQLGQARRVVVTKDDTTIINEGTEDVVKEHCESLRKQIKVSDDAYQREQLQDRIAKLSGGVAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGTMFVHLAESLKEWAKVNLREDELIGALILEKAITAPLRRIAENAGKNNFIIIEQIEKGDFTFGYNAANDTFGDMFDFGIVDPAKVSRSALQNATSIAGMILTTECIVVEN 526          
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Match: A0A2U9NM60_9STRA (Chaperonin GroEL, chloroplastic n=2 Tax=Proboscia TaxID=216776 RepID=A0A2U9NM60_9STRA)

HSP 1 Score: 488 bits (1255), Expect = 2.630e-167
Identity = 250/368 (67.93%), Postives = 308/368 (83.70%), Query Frame = 3
Query:   75 IGSMIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEKAEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEALSTLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRLDNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSYDIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENTGKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAISIASMILTTECIVVE 1178
            IG +IA AL  VG++G+ISLEE     TEL ITEGM+L+ GFISPYFITN +K EA YENP IL+T+K++TLVQQDL+P+LE+V  TKRPLLIIA+DIEKEAL+TL+LNKLRGIV VVAIRAPGFG+ RK +LEDIAILT G++I ++ GL LDN+ L LLG+A R+I+TK+S+T++ +G ++ IK RCEQL+KQI  +D+ Y+ E+L+DRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGI+PGGGA   HLS  ++ W++ NLKDD+LIGA I++ +I  PLKRIAEN G NG+VI E V+  + E GYNA  N FG+M+  G++DPAKVTRSALQNA SIASMILTTECI+V+
Sbjct:  157 IGCLIADALAKVGKEGVISLEEGKGIITELEITEGMKLENGFISPYFITNTDKMEALYENPLILLTDKRITLVQQDLLPVLEQVTKTKRPLLIIAQDIEKEALATLILNKLRGIVDVVAIRAPGFGELRKLILEDIAILTGGSVITQDAGLSLDNIQLNLLGEARRVIITKDSSTIVAEGTEKAIKIRCEQLRKQINLADTDYEKERLQDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEGIVPGGGATFVHLSQIIKAWAKNNLKDDELIGAIIISNAILAPLKRIAENAGINGAVIVEQVQQENFELGYNAAKNTFGNMYELGIIDPAKVTRSALQNATSIASMILTTECIIVD 524          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52063.12567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7H1_9PHAE1.580e-23493.03Chaperonin GroEL n=1 Tax=Protohalopteris sp. TaxID... [more]
D1GJF9_FUCVE3.160e-21083.29Chaperonin GroEL, chloroplastic n=50 Tax=Phaeophyc... [more]
A0A141BSB8_9PHAE3.660e-20983.29Chaperonin GroEL, chloroplastic n=7 Tax=Sargassum ... [more]
A0A2I4Q2B6_9PHAE2.520e-20781.82Chaperonin GroEL, chloroplastic n=1 Tax=Dictyopter... [more]
A0A8E5XRF2_9PHAE1.610e-20079.73Chaperonin GroEL, chloroplastic n=1 Tax=Ishige oka... [more]
A0A1I9LVQ1_9PHAE6.360e-19879.57Chaperonin GroEL, chloroplastic n=1 Tax=Pleuroclad... [more]
B7T225_VAULI1.120e-17871.43Chaperonin GroEL, chloroplastic n=1 Tax=Vaucheria ... [more]
A0A7S6U9T2_9STRA7.980e-17268.10Chaperonin GroEL, chloroplastic n=1 Tax=Schizoclad... [more]
A0A1Z8UKY4_9PROT2.610e-16867.84Chaperonin GroEL n=2 Tax=cellular organisms TaxID=... [more]
A0A2U9NM60_9STRA2.630e-16767.93Chaperonin GroEL, chloroplastic n=2 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52063contigH-paniculata_contig52063:11..1203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score595.1
Seed ortholog evalue2.2e-167
Seed eggNOG ortholog2880.D1J773
Preferred namegroL
KEGG koko:K04077
KEGG Pathwayko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.protein refolding
EggNOG OGsCOG0459@1,KOG0356@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03110,ko04147
Exons1
Model size1193
Cds size1110
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.6814842-UTR-H-paniculata_contig52063:10..931622930517.6814842-UTR-H-paniculata_contig52063:10..93Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52063 11..93 +
1691481328.1047018-UTR-H-paniculata_contig52063:10..931691481328.1047018-UTR-H-paniculata_contig52063:10..93Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig52063 11..93 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.6949048-CDS-H-paniculata_contig52063:93..12031622930517.6949048-CDS-H-paniculata_contig52063:93..1203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52063 94..1203 +
1691481328.1223817-CDS-H-paniculata_contig52063:93..12031691481328.1223817-CDS-H-paniculata_contig52063:93..1203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52063 94..1203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52063.12567.1prot_H-paniculata_contig52063.12567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52063 94..1203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52063.12567.1

>prot_H-paniculata_contig52063.12567.1 ID=prot_H-paniculata_contig52063.12567.1|Name=mRNA_H-paniculata_contig52063.12567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=370bp
MIAKALKIVGRDGIISLEESTSTFTELVITEGMRLDKGFISPYFITNPEK
AEAEYENPYILITNKKLTLVQQDLVPILEKVAFTKRPLLIIAEDIEKEAL
STLVLNKLRGIVQVVAIRAPGFGDFRKSLLEDIAILTDGTLINEELGLRL
DNVPLTLLGKASRIIVTKESTTLITKGNKENIKNRCEQLKKQIITSDSSY
DIEKLKDRIAKLSGGIAVIKVGAVTETEMKDKKLRLEDAINATRAAVEEG
IIPGGGAFLTHLSAPLRLWSQKNLKDDQLIGAYILAESIKEPLKRIAENT
GKNGSVITEIVESGDIEFGYNAEINEFGDMFSYGVVDPAKVTRSALQNAI
SIASMILTTECIVVEDKIE*
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mRNA from alignment at H-paniculata_contig52063:11..1203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52063.12567.1 ID=mRNA_H-paniculata_contig52063.12567.1|Name=mRNA_H-paniculata_contig52063.12567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-paniculata_contig52063:11..1203+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATGTCTAGTCCAATTGTAACTCTTCTTGCAATCGAACAAGTTGCTAC TATTTCGGCTGGTAATATGCAGAAATTGGTTCAATGATTGCTAAAGCTCT AAAAATTGTAGGAAGAGATGGTATTATATCATTAGAAGAAAGTACTAGTA CATTTACAGAATTAGTAATAACTGAAGGGATGAGATTAGATAAAGGTTTT ATTTCACCTTATTTTATTACAAATCCCGAAAAAGCAGAAGCGGAATATGA AAATCCGTATATTTTAATAACAAATAAAAAACTTACCTTAGTACAGCAAG ACTTAGTTCCAATTCTAGAGAAAGTGGCTTTTACAAAACGTCCCTTATTA ATTATTGCAGAAGATATTGAAAAAGAAGCTTTATCAACATTAGTTTTAAA TAAATTACGTGGTATTGTTCAGGTTGTTGCTATTCGAGCACCCGGTTTTG GAGATTTTCGAAAATCTCTATTAGAAGATATTGCAATTTTAACAGATGGA ACATTAATTAATGAAGAATTAGGTTTACGTTTAGATAATGTTCCTTTAAC CTTATTAGGAAAAGCATCGCGAATAATCGTTACAAAAGAATCAACTACTT TAATTACTAAAGGTAATAAAGAAAACATCAAAAACCGTTGTGAACAGTTA AAAAAACAAATTATCACAAGTGATTCATCCTATGATATTGAAAAATTGAA AGATCGAATTGCTAAACTTTCTGGTGGAATAGCTGTTATAAAAGTTGGTG CAGTAACTGAGACTGAAATGAAAGATAAAAAATTAAGACTCGAAGATGCA ATAAATGCAACTCGAGCTGCTGTTGAAGAAGGAATTATTCCTGGAGGAGG AGCATTTTTAACTCATCTTTCCGCACCATTAAGATTATGGTCACAAAAAA ATTTAAAAGATGATCAACTTATTGGGGCATATATTCTAGCGGAATCTATT AAAGAACCATTAAAAAGAATTGCTGAGAATACTGGAAAAAATGGTAGTGT AATTACAGAAATTGTTGAATCTGGTGATATAGAATTTGGTTATAATGCTG AAATAAATGAATTTGGAGATATGTTTTCTTATGGTGTTGTTGATCCAGCA AAAGTAACTCGATCAGCATTACAAAATGCAATTTCCATAGCTAGTATGAT ATTAACTACTGAGTGTATAGTTGTTGAGGATAAAATAGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig52063:11..1203+

>mRNA_H-paniculata_contig52063.12567.1 ID=mRNA_H-paniculata_contig52063.12567.1|Name=mRNA_H-paniculata_contig52063.12567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at H-paniculata_contig52063:11..1203+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGCTAAAGCTCTAAAAATTGTAGGAAGAGATGGTATTATATCATT
AGAAGAAAGTACTAGTACATTTACAGAATTAGTAATAACTGAAGGGATGA
GATTAGATAAAGGTTTTATTTCACCTTATTTTATTACAAATCCCGAAAAA
GCAGAAGCGGAATATGAAAATCCGTATATTTTAATAACAAATAAAAAACT
TACCTTAGTACAGCAAGACTTAGTTCCAATTCTAGAGAAAGTGGCTTTTA
CAAAACGTCCCTTATTAATTATTGCAGAAGATATTGAAAAAGAAGCTTTA
TCAACATTAGTTTTAAATAAATTACGTGGTATTGTTCAGGTTGTTGCTAT
TCGAGCACCCGGTTTTGGAGATTTTCGAAAATCTCTATTAGAAGATATTG
CAATTTTAACAGATGGAACATTAATTAATGAAGAATTAGGTTTACGTTTA
GATAATGTTCCTTTAACCTTATTAGGAAAAGCATCGCGAATAATCGTTAC
AAAAGAATCAACTACTTTAATTACTAAAGGTAATAAAGAAAACATCAAAA
ACCGTTGTGAACAGTTAAAAAAACAAATTATCACAAGTGATTCATCCTAT
GATATTGAAAAATTGAAAGATCGAATTGCTAAACTTTCTGGTGGAATAGC
TGTTATAAAAGTTGGTGCAGTAACTGAGACTGAAATGAAAGATAAAAAAT
TAAGACTCGAAGATGCAATAAATGCAACTCGAGCTGCTGTTGAAGAAGGA
ATTATTCCTGGAGGAGGAGCATTTTTAACTCATCTTTCCGCACCATTAAG
ATTATGGTCACAAAAAAATTTAAAAGATGATCAACTTATTGGGGCATATA
TTCTAGCGGAATCTATTAAAGAACCATTAAAAAGAATTGCTGAGAATACT
GGAAAAAATGGTAGTGTAATTACAGAAATTGTTGAATCTGGTGATATAGA
ATTTGGTTATAATGCTGAAATAAATGAATTTGGAGATATGTTTTCTTATG
GTGTTGTTGATCCAGCAAAAGTAACTCGATCAGCATTACAAAATGCAATT
TCCATAGCTAGTATGATATTAACTACTGAGTGTATAGTTGTTGAGGATAA
AATAGAGTAAATGATTGCTAAAGCTCTAAAAATTGTAGGAAGAGATGGTA
TTATATCATTAGAAGAAAGTACTAGTACATTTACAGAATTAGTAATAACT
GAAGGGATGAGATTAGATAAAGGTTTTATTTCACCTTATTTTATTACAAA
TCCCGAAAAAGCAGAAGCGGAATATGAAAATCCGTATATTTTAATAACAA
ATAAAAAACTTACCTTAGTACAGCAAGACTTAGTTCCAATTCTAGAGAAA
GTGGCTTTTACAAAACGTCCCTTATTAATTATTGCAGAAGATATTGAAAA
AGAAGCTTTATCAACATTAGTTTTAAATAAATTACGTGGTATTGTTCAGG
TTGTTGCTATTCGAGCACCCGGTTTTGGAGATTTTCGAAAATCTCTATTA
GAAGATATTGCAATTTTAACAGATGGAACATTAATTAATGAAGAATTAGG
TTTACGTTTAGATAATGTTCCTTTAACCTTATTAGGAAAAGCATCGCGAA
TAATCGTTACAAAAGAATCAACTACTTTAATTACTAAAGGTAATAAAGAA
AACATCAAAAACCGTTGTGAACAGTTAAAAAAACAAATTATCACAAGTGA
TTCATCCTATGATATTGAAAAATTGAAAGATCGAATTGCTAAACTTTCTG
GTGGAATAGCTGTTATAAAAGTTGGTGCAGTAACTGAGACTGAAATGAAA
GATAAAAAATTAAGACTCGAAGATGCAATAAATGCAACTCGAGCTGCTGT
TGAAGAAGGAATTATTCCTGGAGGAGGAGCATTTTTAACTCATCTTTCCG
CACCATTAAGATTATGGTCACAAAAAAATTTAAAAGATGATCAACTTATT
GGGGCATATATTCTAGCGGAATCTATTAAAGAACCATTAAAAAGAATTGC
TGAGAATACTGGAAAAAATGGTAGTGTAATTACAGAAATTGTTGAATCTG
GTGATATAGAATTTGGTTATAATGCTGAAATAAATGAATTTGGAGATATG
TTTTCTTATGGTGTTGTTGATCCAGCAAAAGTAACTCGATCAGCATTACA
AAATGCAATTTCCATAGCTAGTATGATATTAACTACTGAGTGTATAGTTG
TTGAGGATAAAATAGAGTAA
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