mRNA_H-paniculata_contig5206.12565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5206.12565.1
Unique NamemRNA_H-paniculata_contig5206.12565.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5206.12565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5206contigH-paniculata_contig5206:8644..12934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1696
Cds size1383
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5206.12565.1prot_H-paniculata_contig5206.12565.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5206 8644..12621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.5151582-CDS-H-paniculata_contig5206:8643..89011622930517.5151582-CDS-H-paniculata_contig5206:8643..8901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5206 8644..8901 -
1691481328.0360756-CDS-H-paniculata_contig5206:8643..89011691481328.0360756-CDS-H-paniculata_contig5206:8643..8901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5206 8644..8901 -
1622930517.5313106-CDS-H-paniculata_contig5206:11496..126211622930517.5313106-CDS-H-paniculata_contig5206:11496..12621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5206 11497..12621 -
1691481328.0457141-CDS-H-paniculata_contig5206:11496..126211691481328.0457141-CDS-H-paniculata_contig5206:11496..12621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5206 11497..12621 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930517.546487-UTR-H-paniculata_contig5206:12621..129341622930517.546487-UTR-H-paniculata_contig5206:12621..12934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5206 12622..12934 -
1691481328.0581186-UTR-H-paniculata_contig5206:12621..129341691481328.0581186-UTR-H-paniculata_contig5206:12621..12934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5206 12622..12934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5206.12565.1

>prot_H-paniculata_contig5206.12565.1 ID=prot_H-paniculata_contig5206.12565.1|Name=mRNA_H-paniculata_contig5206.12565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=461bp
MLPQAGGKKRARPWGRQTSSSSTTAAAAAAATFAFAALSVTSAFSFPLGS
QPFHAHPARPQGRKTTTTTRSSLLRPQQESSSQPSPPCPSCRETRRTKPR
RVACRHHHHRVAGSDAIAASGGAHTTREGDSRRQAAVSPRLQSRGGIAGA
AADQGRVEDSTEERAARRRQLHGEKSSCVIASASGSSVQVASSSPSAVVL
DRKGGVKELSNSSRGISSSSSSRCSDHSNGVIASKTGSPRQLQDYYYYYE
DGSNGAEENRRRWQHQQRQRRRGIPAALAEYEIVQEGQGYDDRSHVEDDN
DNDCERDNGSSGSNGSSRMHGNKRHHIVMGLRDNDARMFLLERGLSQGEL
RRVMPVMRRDPRLISDVGVLAARMQALSGMLEAASAGSSWYRLSRDPNGK
NDTHSAAMASPPLPYLHHKVADRNSTPSSSSSFSSSRERLLDATLCDSDV
QGDGYNPGGDG
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mRNA from alignment at H-paniculata_contig5206:8644..12934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5206.12565.1 ID=mRNA_H-paniculata_contig5206.12565.1|Name=mRNA_H-paniculata_contig5206.12565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4291bp|location=Sequence derived from alignment at H-paniculata_contig5206:8644..12934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAACATGAGCTAAAGCAACCAGCTACGACTGGGCTATGGCGTTGACTC
GGTGACGCTGTGAGATGTCGACCAAGAAAGCGTGTTCGTGGGAGACAAGA
AGATATCGATTTTCCCCGTGTAAGGAATCCTGAGAGCGGCCGAGGTCATT
AGCAGTCTTAGGTAATAGTACTTCACCCGCAGAAGCCAACTATCAGCAAG
TACCAAGCACGGACCCGTTGAAGCTACTTTTGTACTACTGTACTGTACAG
TACAGCAACACTGCTGCAACAGCAATCGCTAGCTATCGCTGAGATCAGAC
TCATATTTACATCATGTTGCCACAGGCGGGTGGAAAAAAGCGAGCAAGGC
CCTGGGGCCGTCAGACGAGCTCTTCGTCAACCACAGCGGCAGCAGCGGCA
GCTGCGACATTCGCTTTCGCAGCTCTCTCCGTGACGAGCGCCTTCTCGTT
CCCCCTCGGCTCTCAGCCGTTTCACGCGCACCCGGCACGCCCTCAAGGTC
GAAAGACCACCACTACCACCAGGTCATCGCTGCTTCGCCCTCAACAGGAA
TCTTCTTCTCAACCTTCTCCTCCTTGCCCCTCTTGTCGAGAAACACGGCG
GACGAAGCCAAGAAGAGTTGCGTGTCGACATCACCATCATCGCGTTGCTG
GTAGCGATGCCATTGCAGCAAGTGGTGGCGCCCACACGACGCGCGAGGGG
GACAGCCGGCGGCAAGCGGCGGTTTCGCCACGCTTGCAGTCTAGGGGTGG
GATTGCTGGAGCAGCAGCAGATCAGGGTCGTGTCGAGGACAGTACGGAGG
AAAGGGCGGCGCGGCGAAGGCAGCTACACGGGGAGAAGTCGAGTTGCGTC
ATTGCATCTGCTAGCGGTAGCAGCGTTCAGGTCGCCTCATCTTCGCCTTC
AGCGGTGGTACTGGATAGAAAGGGTGGGGTGAAGGAGCTATCTAACAGCA
GCCGTGGCATCAGTAGTAGCAGTAGCAGCCGTTGTAGTGACCACAGTAAC
GGTGTTATCGCCAGTAAAACAGGCTCCCCGCGACAGCTGCAAGACTACTA
CTATTACTATGAAGACGGGAGCAACGGCGCCGAGGAGAACCGCCGCAGGT
GGCAGCACCAACAACGCCAACGGCGGCGGGGGATCCCAGCGGCATTGGCA
GAATATGAGATCGTCCAAGAAGGTCAAGGCTACGATGACCGCAGCCACGT
TGAGGATGACAACGACAACGATTGCGAAAGGGACAATGGAAGTAGTGGGA
GTAATGGTAGTAGCCGAATGCACGGTAACAAAAGACATCATATCGTGATG
GGTCTCAGGGATAACGATGCTCGCATGTTTCTGCTGGAGAGAGGCTTGTC
ACAGGGGGAGCTGCGTCGGGTGATGCCGGTAATGAGGAGGGATCCGCGGC
TCATCTCCGACGTTGGTGTCCTTGCGGCTCGAATGCAGGTAAGGTACAGC
ACCGGATTTGGGTCTCTCCTTCATTTACTACAATTACCCTCACGCTGATT
CTATTAAATCACCGTACGTGCGCAAATCAGGGATGTGTAGTACCTCGAGG
GTACCATTCATTAAGGGAGAACCCAGCGAACCAGGACCTTCTGAATTTGA
AAAGTGAAATATAGAGAGGGGTCGAGGGGGAGACCCCCATTTCAAGGGAG
GGTACTCATCCTATAGGCACCTTATTTACTTGCATACAGTAAGGCACGAT
TTTGACTTGATTGTAGTATGGAAAGACCATACTCGCCGCTTTGCGGCGCA
ACTTCCCAGTTGGTGTGGTCTGCAATTGGAACACAGTACCTGACTGTACT
ATACTGTGGGCAACTGTAGCTTGACTATCTACAGCAACGGGCCAGCAGAG
TGACGGCTCAGGTAGTGGAGCAGTTGCTGAGGTACCAGCAGTGCCAGACG
TACTGGAAGGGCTGTCGGTCAACTGGAAAAAGCGTGTTGGCGGCAAGTTC
TGTTGGGCCTGAGAAGGCGAAACTTGGGGGAAAAATATTTCACGGCAAGT
TGGATTATGACTATAACCAAATTACGATGTTCGTAAAGTTGTCTCAACAG
ACTACCCCCCCGCCGCCCCGTGAAAATGGCCAGAAACAATCACCCTGGTT
TTGAAGTCCTCACGTATAGCTGATCTTTCCTGTAGCCCAAATCGTTTCAT
TGGTGCAGAAATAACATTAATTCAGCTTCACCTTTTTTTCTGGATTCTGG
AGGCGTCTTGGGGAGGGGGTGCAGGTTTCGTGAGTTTCGTTGGTACGGCC
CCTTGCTATTCATTCATATTTGCAAAATTGCTTACGGTGTTTCACAGTAC
AGTACAGGGGAAACAACCTAAGTTTCTGCCGTCCGGTGTAACCGAGGTAA
TTAGCCGAGCAATCTGCTGGGCCTCAAATCGGTACTAATAGTTACCAATT
GTGACAGGCCCCATGTGTGTCAGTGAACTCAATATCATTGCTGCAATACA
ACACAGTACAGTAAAACGGAACCCAAGTAGCAACACGATCACTGCGGGTT
CGTAATCATACTCTACAAGTAAACCCATCTCCCAAGGCAGCAAACTCGGC
ACACCTATGGATCATACCGCGTGACGCTAACCATACTCCACGGAAAAATC
TATGCCGAAATATTCCTACCACTGGGAGAGATGGTACGGCCATAAATCCG
CTGTCTTGTCACACCGGGCTGCGATTTTTTTCAGACAGGACTCTATCGAG
AATGGAGATCCTTGACGCGGTCGGAAGAGCCCGTAAATCGACAGAAAAAT
CTCGGCAAGGTAAATCACGTATTTCGTTGCCAGTGGCACCCGTAGCTGGT
CAAGACAACCTCCTTTGAAAAAAAAATGTACCTCCGTGCGATGACAAAGG
CTTTTGCAGTAGTGCATCATTTGGCACGGCGGCATGCCTATGGTTGTATG
GCATGGCACGGTACGGCGCAGGTACTTGTAACGATCCGCAACTTGTTCGG
AGTGACGTTTGCGGGCTACTGTTGTGTCACCGGCGCCGTATTCCGTCCAG
TTCCACCGAACAAATTGATGATAATGCCGTGTGATACGGTAACCAACACC
CAGCGGCTAATGCAAGATCTGTCGTCATGCACGCAGGCGAAAAAAGTGCC
ACGGTGAGACTGTTTTTTTTTATCCCGTCCCGATGTCTTGAAACAAGCGA
GTGCCCCCCCCGGAAGCGTCAGAGGCACAGAGCCCTCCCCCCTTTCCCGT
TGAATTCTACACATATGCGAATAAACGGTTACCGTTCGGTTAGCATTTGA
TAAGTCTCGTCCTATCTGCGATATAGGATGATACGAGAATACCCGGATTT
TTTGCAACACATGAGATGCCCTCTTCGAGGCTAAAAATGACCATTGGCGA
GATAAATCAAACGGCCTGCTCCACATTGTTCATACCGGAACGAGGACACA
GAGGTAACGCAATCAAGATGCTCGACCAGCCCTTCTCAGGAGGATAATCA
TACTCCAAAATCGACCCCGGTTGTCGTAGGGCAATTCATGCATCTATACG
AGGAAGAATCGCAAGTTATGGGCATAGAGTTCTTTCTCTCTCTATCTCTC
TCTCTCTCTCTCTTTATATATATACATATACATATACACACACATAGACT
ACCTTTTGCGGCATTTTTTATGTTCTAGTTCACATTGATATATGCCGAGT
CGCGTCCTTTGTACCGTCATGTGTCAACCCTTTCAGACATACACATACAT
ACAGAGAGCTTTACATAGACATACATATAAGTTCGCGACCTATTAAAGCT
ACTTCCTGAATTGCGGTCTAGAATATATATGCAAACAAGGCTAACCTTTG
CCGCAACTTGGAGATTTTTTTATAACAGAAATAGGGAAATGAAAAAGTCA
ACTGAATTTTCATTAAGTAAAACGAATGTTGCCGCAATTTGAAGATAACA
ATAAGGTTCTTCTCTTGATAATTCTCCCATGAGAAGAGAAACAAAGGAAA
GTATGAATGGCCTCAAAACGTTCTGCTACTTGACTACTTCTGTTATTCAT
TAACATGACGAAAACCTTTCCTCGATCAGCCAGGCCCTCTCTGGAATGTT
GGAGGCTGCTTCGGCGGGATCATCGTGGTACAGGTTATCTCGGGACCCTA
ACGGTAAGAATGACACACACTCAGCCGCGATGGCGTCACCGCCGCTGCCA
TACCTACATCACAAAGTCGCCGACCGCAACAGCACACCATCGTCTTCATC
TTCGTTTTCCTCTTCTCGAGAGCGGCTACTCGACGCTACCCTCTGCGATA
GTGACGTTCAGGGCGATGGATATAACCCAGGAGGGGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5206:8644..12934-

>mRNA_H-paniculata_contig5206.12565.1 ID=mRNA_H-paniculata_contig5206.12565.1|Name=mRNA_H-paniculata_contig5206.12565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2766bp|location=Sequence derived from alignment at H-paniculata_contig5206:8644..12934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCCACAGGCGGGTGGAAAAAAGCGAGCAAGGCCCTGGGGCCGTCA
GACGAGCTCTTCGTCAACCACAGCGGCAGCAGCGGCAGCTGCGACATTCG
CTTTCGCAGCTCTCTCCGTGACGAGCGCCTTCTCGTTCCCCCTCGGCTCT
CAGCCGTTTCACGCGCACCCGGCACGCCCTCAAGGTCGAAAGACCACCAC
TACCACCAGGTCATCGCTGCTTCGCCCTCAACAGGAATCTTCTTCTCAAC
CTTCTCCTCCTTGCCCCTCTTGTCGAGAAACACGGCGGACGAAGCCAAGA
AGAGTTGCGTGTCGACATCACCATCATCGCGTTGCTGGTAGCGATGCCAT
TGCAGCAAGTGGTGGCGCCCACACGACGCGCGAGGGGGACAGCCGGCGGC
AAGCGGCGGTTTCGCCACGCTTGCAGTCTAGGGGTGGGATTGCTGGAGCA
GCAGCAGATCAGGGTCGTGTCGAGGACAGTACGGAGGAAAGGGCGGCGCG
GCGAAGGCAGCTACACGGGGAGAAGTCGAGTTGCGTCATTGCATCTGCTA
GCGGTAGCAGCGTTCAGGTCGCCTCATCTTCGCCTTCAGCGGTGGTACTG
GATAGAAAGGGTGGGGTGAAGGAGCTATCTAACAGCAGCCGTGGCATCAG
TAGTAGCAGTAGCAGCCGTTGTAGTGACCACAGTAACGGTGTTATCGCCA
GTAAAACAGGCTCCCCGCGACAGCTGCAAGACTACTACTATTACTATGAA
GACGGGAGCAACGGCGCCGAGGAGAACCGCCGCAGGTGGCAGCACCAACA
ACGCCAACGGCGGCGGGGGATCCCAGCGGCATTGGCAGAATATGAGATCG
TCCAAGAAGGTCAAGGCTACGATGACCGCAGCCACGTTGAGGATGACAAC
GACAACGATTGCGAAAGGGACAATGGAAGTAGTGGGAGTAATGGTAGTAG
CCGAATGCACGGTAACAAAAGACATCATATCGTGATGGGTCTCAGGGATA
ACGATGCTCGCATGTTTCTGCTGGAGAGAGGCTTGTCACAGGGGGAGCTG
CGTCGGGTGATGCCGGTAATGAGGAGGGATCCGCGGCTCATCTCCGACGT
TGGTGTCCTTGCGGCTCGAATGCAGATGTTGCCACAGGCGGGTGGAAAAA
AGCGAGCAAGGCCCTGGGGCCGTCAGACGAGCTCTTCGTCAACCACAGCG
GCAGCAGCGGCAGCTGCGACATTCGCTTTCGCAGCTCTCTCCGTGACGAG
CGCCTTCTCGTTCCCCCTCGGCTCTCAGCCGTTTCACGCGCACCCGGCAC
GCCCTCAAGGTCGAAAGACCACCACTACCACCAGGTCATCGCTGCTTCGC
CCTCAACAGGAATCTTCTTCTCAACCTTCTCCTCCTTGCCCCTCTTGTCG
AGAAACACGGCGGACGAAGCCAAGAAGAGTTGCGTGTCGACATCACCATC
ATCGCGTTGCTGGTAGCGATGCCATTGCAGCAAGTGGTGGCGCCCACACG
ACGCGCGAGGGGGACAGCCGGCGGCAAGCGGCGGTTTCGCCACGCTTGCA
GTCTAGGGGTGGGATTGCTGGAGCAGCAGCAGATCAGGGTCGTGTCGAGG
ACAGTACGGAGGAAAGGGCGGCGCGGCGAAGGCAGCTACACGGGGAGAAG
TCGAGTTGCGTCATTGCATCTGCTAGCGGTAGCAGCGTTCAGGTCGCCTC
ATCTTCGCCTTCAGCGGTGGTACTGGATAGAAAGGGTGGGGTGAAGGAGC
TATCTAACAGCAGCCGTGGCATCAGTAGTAGCAGTAGCAGCCGTTGTAGT
GACCACAGTAACGGTGTTATCGCCAGTAAAACAGGCTCCCCGCGACAGCT
GCAAGACTACTACTATTACTATGAAGACGGGAGCAACGGCGCCGAGGAGA
ACCGCCGCAGGTGGCAGCACCAACAACGCCAACGGCGGCGGGGGATCCCA
GCGGCATTGGCAGAATATGAGATCGTCCAAGAAGGTCAAGGCTACGATGA
CCGCAGCCACGTTGAGGATGACAACGACAACGATTGCGAAAGGGACAATG
GAAGTAGTGGGAGTAATGGTAGTAGCCGAATGCACGGTAACAAAAGACAT
CATATCGTGATGGGTCTCAGGGATAACGATGCTCGCATGTTTCTGCTGGA
GAGAGGCTTGTCACAGGGGGAGCTGCGTCGGGTGATGCCGGTAATGAGGA
GGGATCCGCGGCTCATCTCCGACGTTGGTGTCCTTGCGGCTCGAATGCAG
GCCCTCTCTGGAATGTTGGAGGCTGCTTCGGCGGGATCATCGTGGTACAG
GTTATCTCGGGACCCTAACGGTAAGAATGACACACACTCAGCCGCGATGG
CGTCACCGCCGCTGCCATACCTACATCACAAAGTCGCCGACCGCAACAGC
ACACCATCGTCTTCATCTTCGTTTTCCTCTTCTCGAGAGCGGCTACTCGA
CGCTACCCTCTGCGATAGTGACGTTCAGGGCGATGGATATAACCCAGGAG
GGGACGGGGCCCTCTCTGGAATGTTGGAGGCTGCTTCGGCGGGATCATCG
TGGTACAGGTTATCTCGGGACCCTAACGGTAAGAATGACACACACTCAGC
CGCGATGGCGTCACCGCCGCTGCCATACCTACATCACAAAGTCGCCGACC
GCAACAGCACACCATCGTCTTCATCTTCGTTTTCCTCTTCTCGAGAGCGG
CTACTCGACGCTACCCTCTGCGATAGTGACGTTCAGGGCGATGGATATAA
CCCAGGAGGGGACGGG
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