prot_H-paniculata_contig5201.12555.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5201.12555.1
Unique Nameprot_H-paniculata_contig5201.12555.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length220
Homology
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BLAST of mRNA_H-paniculata_contig5201.12555.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.050e-42
Identity = 95/213 (44.60%), Postives = 122/213 (57.28%), Query Frame = 0 
Query:   18 YVEFLAKAVQGGGRGKAFMERFCCTSSRNDFVDYRRAIRKFEGHLSTVRESIV-GGSWNQDFKTVVVSYPFVGF---------CRLDYDPNRADDSSFTSASKDKGRCAACHRKQCAHVYAMYVAGNTYDSDGMWTRRRWDKMLPDGWTDADGMEDSRTASFGVDVQERLELGGTCKFKAHLFHTLRHYKLYLACKIRRKMDEEDYTPEMFRK 220
            Y+EFLAKAVQGGG+G AFME+F   S R+ F DYR+AI+ FEG + T+RESI  GGSWNQ+F T V SYPFVGF           +D D     D  + S  +    CAACHR+Q  ++  MY+AG+     G  ++++                          V+ERL LGG C++K+HL+HTL HYKLYL CK+R  MD     PE  RK
Sbjct:  940 YLEFLAKAVQGGGKGAAFMEKF--DSKRHAFTDYRKAIKNFEGRVCTIRESIAAGGSWNQEFMTAVTSYPFVGFHFGVSHEGPTEID-DEEEGQDIDWESLGRPDP-CAACHRRQRENMSTMYLAGSR---GGYKSKQK--------------------------VRERLGLGGRCRYKSHLYHTLLHYKLYLVCKVREHMDTTGVGPEDLRK 1119
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5201.12555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLB0_ECTSI1.050e-4244.60RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025451Domain of unknown function DUF4211PFAMPF13926DUF4211coord: 44..139
e-value: 5.0E-10
score: 39.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5201contigH-paniculata_contig5201:1246..5315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5201.12555.1mRNA_H-paniculata_contig5201.12555.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5201 1246..5315 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5201.12555.1 ID=prot_H-paniculata_contig5201.12555.1|Name=mRNA_H-paniculata_contig5201.12555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MSSTPGELEDAFESFGWYVEFLAKAVQGGGRGKAFMERFCCTSSRNDFVD
YRRAIRKFEGHLSTVRESIVGGSWNQDFKTVVVSYPFVGFCRLDYDPNRA
DDSSFTSASKDKGRCAACHRKQCAHVYAMYVAGNTYDSDGMWTRRRWDKM
LPDGWTDADGMEDSRTASFGVDVQERLELGGTCKFKAHLFHTLRHYKLYL
ACKIRRKMDEEDYTPEMFRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025451DUF4211