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Homology
BLAST of mRNA_H-paniculata_contig5201.12555.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 163 bits (413), Expect = 1.050e-42 Identity = 95/213 (44.60%), Postives = 122/213 (57.28%), Query Frame = 1
Query: 52 YVEFLAKAVQGGGRGKAFMERFCCTSSRNDFVDYRRAIRKFEGHLSTVRESIV-GGSWNQDFKTVVVSYPFVGF---------CRLDYDPNRADDSSFTSASKDKGRCAACHRKQCAHVYAMYVAGNTYDSDGMWTRRRWDKMLPDGWTDADGMEDSRTASFGVDVQERLELGGTCKFKAHLFHTLRHYKLYLACKIRRKMDEEDYTPEMFRK 660
Y+EFLAKAVQGGG+G AFME+F S R+ F DYR+AI+ FEG + T+RESI GGSWNQ+F T V SYPFVGF +D D D + S + CAACHR+Q ++ MY+AG+ G ++++ V+ERL LGG C++K+HL+HTL HYKLYL CK+R MD PE RK
Sbjct: 940 YLEFLAKAVQGGGKGAAFMEKF--DSKRHAFTDYRKAIKNFEGRVCTIRESIAAGGSWNQEFMTAVTSYPFVGFHFGVSHEGPTEID-DEEEGQDIDWESLGRPDP-CAACHRRQRENMSTMYLAGSR---GGYKSKQK--------------------------VRERLGLGGRCRYKSHLYHTLLHYKLYLVCKVREHMDTTGVGPEDLRK 1119
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 164.5 |
| Seed ortholog evalue | 5.7e-38 |
| Seed eggNOG ortholog | 2880.D7FLB0 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | helicase activity |
| EggNOG OGs | COG0513@1,KOG0331@2759 |
| Ec32 ortholog description | RNA helicase |
| Ec32 ortholog | Ec-15_004980.1 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 6 |
| Model size | 660 |
| Cds size | 660 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5201.12555.1 >prot_H-paniculata_contig5201.12555.1 ID=prot_H-paniculata_contig5201.12555.1|Name=mRNA_H-paniculata_contig5201.12555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MSSTPGELEDAFESFGWYVEFLAKAVQGGGRGKAFMERFCCTSSRNDFVD
YRRAIRKFEGHLSTVRESIVGGSWNQDFKTVVVSYPFVGFCRLDYDPNRA
DDSSFTSASKDKGRCAACHRKQCAHVYAMYVAGNTYDSDGMWTRRRWDKM
LPDGWTDADGMEDSRTASFGVDVQERLELGGTCKFKAHLFHTLRHYKLYL
ACKIRRKMDEEDYTPEMFRK back to topmRNA from alignment at H-paniculata_contig5201:1246..5315- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5201.12555.1 ID=mRNA_H-paniculata_contig5201.12555.1|Name=mRNA_H-paniculata_contig5201.12555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4070bp|location=Sequence derived from alignment at H-paniculata_contig5201:1246..5315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAGCACACCAGGTGAATTAGAAGATGCTTTCGAGTCGTTCGGGTG
GTACGTCGAATTCCTGGCCAAGGCCGTGCAAGGTATGTCGCCACTGTGTT
CGATGAGCTGTTGGAACCGATTCGGAAGAATTTTAAAAATGGTTGATCAG
TGGTTGAGTGTTAGAAGTTATTGTAACACCCATCAAGTGGATTGGGTCTG
AGAAGGCGCTGACGTGTACTATGTGATTGATTCTCTTCGCGATTTTTATT
TTGTTTTATTTCAATAACGCGTGTGTTTGGAGATGCTTGGTGACTTCCGT
GCGCGTGATTGGCGATATTAACACATGCTCAATAAAATACTTCGGGCTAG
ATCAGAAGGGAATTAACTCCCCGAGGGTGCGACTACCGAGACTAGAAGCC
CGTGGTCACTGTACACTTGTTCAACACAAGGTTTGAATCGGATTCAACTT
TTGAGAAGTTGGTGAACCAGTTCCAAGGTATAGTTTCCCATGGCCATGTT
CGTGTCCCGGTGTACGGCCCCGCTGACAAAAATCACCCTCTAAGAAATTG
AGGCTCAGTTTGTGCCAACCCATGAGGAAGCTGGGCTGAGAAAGGGAGCT
CACATTGTGGGTCTATATCAGTGCTGCTCAGGATGATTCTTGACAAAGTG
AGGTTTTGATCGATCCTCATCGTACATGAGAGTTTTTTCTTAGTTATGCT
ATCCCCGGGCCCATACTCTCTGTTGTACTTGGCGTTTGTTATCCAGGGTT
TGTTCTCCAACAGCAACGGTACGTCCATCAGTGCGATCTTGAAGAGAATA
CGTTACTTGCAGTGCCACTTGCACGTGTATCACTAGATAGAGTAACAGCC
TGAAGGGCCCCGGAATCAGCGCTTGTATAGGTGCCATAATAACCAGTGAA
CAGCGACAAAGTCAGGGATAGCAGCCGTGTTAGTGCCTATTGTGACACGT
ATACCACGCTATAGTATTCAGCTCACCGGTTAGTGTGGTGGCTCCTTGCC
ATGGTACATTCGTACGGTACTCAGGATCACATGTTACTCGTACTAAATTA
CGCAGCGGCAGCAGCAGCGGCAGCAGCAGTGTGCTTTAACACTATCTACC
TGTTTCCGTTGGAATTCGTGAGGGCAGGCGGAGGCAGGGGCAAGGCTTTC
ATGGAACGATTCTGCTGTACCTCAAGCCGGAACGACTTCGTGGATTACCG
CAGGGCTATCAGGAAATTTGAAGGCCACCTTAGCACCGTCAGAGAGAGCA
TTGTTGGCGGCTCTTGGAATCAAGATTTCAAGTGAGTGTTCGGTAGTGCC
GCGTGCGAGTAGCTCGCTCCCTCTCCGTGTCCTCCATTTGATCTCCACAT
AGCTTTCTGTTTCTCGACTTTAAACTTTAAAGTTCCGTCATGCTAAGGTA
TATGTGTGCGGTATGTTTACAGGTTACAAGCGCTGCTGGCTATATTATTT
TTGTTTTGTCAGGCTGTAAATAAACCAAGAGGCACCTGTGTGAGGGAATG
GTTTCGTTTGTTCTGTTGATCCAACTCATTCAGTGACGAAGGAGGGATTT
AAGTCGCACCGAACCTTACACATTTTATTTTAGCCTGCTGTTACCTTACG
GTAAGCATATCCAATCTAGGTAATTTACTTCTCTCTTTCTGGTTGCTTTT
TTGCTGAAACAACGGTGCGTTTGTTGACCTGTACGGAACGGGCACAACAT
TCTTTTCTAAACTCGCGAGCGGTTTTGAGTCAAACATCATCACCACTAGC
CATTTTTGTTCATCCCGGTCCCGGTTGCTTGCTCTGTGCGGTCGATGTGG
CTGCCGCGCATTCGGGGGTGGTCTTGACACATCCCACGCAGATGCACTTG
ATGACTTCAACTGACGGAAACTGCATACCTCCGTCTGGCATAATGAATGC
ACTTATTTCGTGTGGGACCGACGTTGTACGCCCCTCAGTCGATTGGGTTG
CTAGTGAGTATATAAAAATTGTATCTAGTTAAAATATGATGTTTCCAGGA
GAGATGGACTCTTGAGGGGACACAGCCTGCGCTGGGACGTGGTTCTAAAT
TTTAACATCTACTAGTAATGGCAGTTGATGAGCGTTGGGCTTTGTCCAGT
AGTGTTGATAAATTACCTGATCATCTAGGGTCGGAAGCAACAAAGATATG
CCCAATAATTTGACAAAACGCTAATGGTTGTTGTGTAGGGGACCCGGCTT
CAGGAACGTCAGGAACGTTCTCTCCACAGTAGCTATGATTGTGACTTTAC
ATATCCTCAGCATTGCGCCCCCCGTCCCCACCTATCCCTTCGACCGCTTT
CTCGTCGTTATCAGGACTGTGGTTGTAAGCTACCCTTTCGTTGGGTTCTG
TCGTTTGGACTACGACCCGAACCGTGCAGATGATTCGTCCTTTACTAGTG
CTTCGAAGGATAAGGGTCGTTGTGCGGCATGCCATCGCAAGCAATGCGCC
CATGTTTACGCCATGTATGTGGCCGGCAACACGTACGACTCCGACGGGGT
GAGATATGGCATGTGAGCCGTGAGACATTAGACACGAGACATGCCAACAC
TGCGTAGTTCTGCTCGTCCTTCGTTTTCGTTGTGCTGCTTGGATGTAGTG
TGTATCGATTCATGTTTCTTTTTGCAGGATTAGAAAGCGCGGCTTAAGGA
TCCAGATCATGTGCGTGGCCTGCTCCGTACCGCATTATGAGGTGGATGAG
GTGGTTTATTCTGTTCTTGATGAATTCTCGATGGTAGTCTTGTTGTTATC
ATGTTTGTTTACATGTCTTGATATGTCTTGGGTGTGTTGCTATGTAAAGG
CGCGGCACATGTGCGTTATGCGGAGTGACGGCGTGGAATTGAGATCGCGC
ATTCTCCGTAAGCGTACGTACGTTTTTGTTAATTTGCTACTTTTTTACGA
CGACGCTTCGACGCGCCGTCCGCACAATTGTTGTACATGGCATGCCGGTG
TGTTTGCTTGTTCATGAAAGATGTGGACAAGGCGGAGATGGGACAAAATG
CTGCCAGATGGCTGGACTGACGCTGACGGCATGGAGGACTCTAGAACGGC
GAGTTTCGGTGTTGTTGGTCCAACTAGCAATTCTAGCTAAGCGTGCTCGT
TAAGCGTGCTCATTAAACTTGCTCCAATTCGGCGCAGCGCTTAGTACTGG
TGGTGCTTCGCTGGTCGATCGATGTAGAGGTAACAAACCCTCCCTTGATT
GCCCTTGCTCTACAAGTGTATGTTTTACTTTTTAGACGAGGTAAGCACAT
GCCAATTTCTGCCGTCTTGTACCTCCTGAAAGGTGACGCCCGACGACAGG
TTACAAGTAACGCCGAATAGAAAGGACAGTTTGGAGCAAAGGGAAAGCTC
AATTTCGGCATGTCTTGTTGGCAATTTGACTATACTTTGGCTGCGTACGC
TCCTCGCCAAGGGCGTTACTTGCTGCCCGAAATCGCTGCGGTTACGTTTC
AAACAGGAAAAAACGCCTAGTCGCTGGGGCGTTGAATGCAATTTACCCGG
TAGGATGTACAAAACCGAACACGTGCGGCAAGTCGGTGGAATTAGGGTTG
CCAAAGCTCTGTCGCGCAATTTGCATGTCGGTTCTTTACATGACAAGGTT
GCGTGTGACGTGTGACGTGCGGGCAGCTGAGGTACGTACTGCTTCCCAAC
ATGTGGGCGGTGTTCTTCAGCTTGGAGTTTCACCTGGATGTCGCTGTATG
TTGACGTTGCGTGTGATGTATATGTGGCTCACGTTTTTCATTACAGGACG
TCCAGGAAAGGCTGGAACTAGGAGGGACTTGCAAATTCAAGGCACACCTG
TTCCACACGTGAGTCGTTGCTCAACCGAACGTTCCACAGTGTCTAACGGT
CACGCCAATAATCCTGCATCGTGGCAAGCTGAAGCCTATGTTGGCGATGT
AGGAGTACGTTTTCGATTCACACAACCTGGTTGATGTGCTGCCTTGCGCT
TAGACGTCACCGTGCACGCGCGGGACACACCGTAGGCTGCGGCACTACAA
GCTGTACCTGGCGTGCAAGATCCGGAGAAAAATGGACGAGGAAGACTATA
CGCCGGAAATGTTCAGGAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5201:1246..5315- >mRNA_H-paniculata_contig5201.12555.1 ID=mRNA_H-paniculata_contig5201.12555.1|Name=mRNA_H-paniculata_contig5201.12555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig5201:1246..5315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCAGCACACCAGGTGAATTAGAAGATGCTTTCGAGTCGTTCGGGTG
GTACGTCGAATTCCTGGCCAAGGCCGTGCAAGATGTCCAGCACACCAGGT
GAATTAGAAGATGCTTTCGAGTCGTTCGGGTGGTACGTCGAATTCCTGGC
CAAGGCCGTGCAAGGCGGAGGCAGGGGCAAGGCTTTCATGGAACGATTCT
GCTGTACCTCAAGCCGGAACGACTTCGTGGATTACCGCAGGGCTATCAGG
AAATTTGAAGGCCACCTTAGCACCGTCAGAGAGAGCATTGTTGGCGGCTC
TTGGAATCAAGATTTCAAGCGGAGGCAGGGGCAAGGCTTTCATGGAACGA
TTCTGCTGTACCTCAAGCCGGAACGACTTCGTGGATTACCGCAGGGCTAT
CAGGAAATTTGAAGGCCACCTTAGCACCGTCAGAGAGAGCATTGTTGGCG
GCTCTTGGAATCAAGATTTCAAGACTGTGGTTGTAAGCTACCCTTTCGTT
GGGTTCTGTCGTTTGGACTACGACCCGAACCGTGCAGATGATTCGTCCTT
TACTAGTGCTTCGAAGGATAAGGGTCGTTGTGCGGCATGCCATCGCAAGC
AATGCGCCCATGTTTACGCCATGTATGTGGCCGGCAACACGTACGACTCC
GACGGGGACTGTGGTTGTAAGCTACCCTTTCGTTGGGTTCTGTCGTTTGG
ACTACGACCCGAACCGTGCAGATGATTCGTCCTTTACTAGTGCTTCGAAG
GATAAGGGTCGTTGTGCGGCATGCCATCGCAAGCAATGCGCCCATGTTTA
CGCCATGTATGTGGCCGGCAACACGTACGACTCCGACGGGATGTGGACAA
GGCGGAGATGGGACAAAATGCTGCCAGATGGCTGGACTGACGCTGACGGC
ATGGAGGACTCTAGAACGGCGAGTTTCGGTGTTATGTGGACAAGGCGGAG
ATGGGACAAAATGCTGCCAGATGGCTGGACTGACGCTGACGGCATGGAGG
ACTCTAGAACGGCGAGTTTCGGTGTTGACGTCCAGGAAAGGCTGGAACTA
GGAGGGACTTGCAAATTCAAGGCACACCTGTTCCACACGACGTCCAGGAA
AGGCTGGAACTAGGAGGGACTTGCAAATTCAAGGCACACCTGTTCCACAC
GCTGCGGCACTACAAGCTGTACCTGGCGTGCAAGATCCGGAGAAAAATGG
ACGAGGAAGACTATACGCCGGAAATGTTCAGGAAGGCTGCGGCACTACAA
GCTGTACCTGGCGTGCAAGATCCGGAGAAAAATGGACGAGGAAGACTATA
CGCCGGAAATGTTCAGGAAG back to top
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