prot_H-paniculata_contig5200.12553.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5200.12553.1
Unique Nameprot_H-paniculata_contig5200.12553.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length927
Homology
BLAST of mRNA_H-paniculata_contig5200.12553.1 vs. uniprot
Match: A0A6H5JG01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG01_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.130e-66
Identity = 289/960 (30.10%), Postives = 409/960 (42.60%), Query Frame = 0
Query:   16 MHPLWSVPCPPNVTACCIADINGNDRQEVVMATSDGCVYVLSVEVNAEEDKQMENDPDREMQRTPQGTSLVGDAYANSDVYSSSSAEAPARGLTPSIAEDAINQAAHFLAHDEDAPSAMLDGTQSSSSIGGSGEEDKPRPIEYIHVDDLRFPGQDHPPAGSGSTTPEARATSWSATNAATTAELPSRAPLNPHLKTLLELKVSGVVTSLSLISFPG-------SAGSRYNRRTTPNASASTHSYSEDTVPRGPDDSKLSPAVNENRQDNCGTATASVSKNPPSGGGGD-----GVTGPAKDEYCVGGVYAAVGLESGIVQVMRLSSRRSESGRLDLISGSGR--QLFDVAESTA---------GSAAGAXXXXXXXXXXXXXXASTIPRFFYAAASEGRPRADSRTGGESLEHACDEKSGGRESGSLKLDAQDSGAEQ------------AAGTGXXXXXXXXXXWWVPVD-PNADIPLSMHGWTGSGLVVGLAPPHAHGYSAADNVVSATPTGAGTPLSHHNLSGHGTSNRGRRGXXXXXXXXXXNVGGRQVYGDAQRSFGVCTADGRVCCCRVVSTAGGLPQWKRMWARQTEVPFFAFHRMDYPNGLGALGHPDDEKETLLVACSWGGITFLFDAEGGHCIAFDPGPFLEHPVKAFVAGDVTTGPGTTEPCLVYVTDGGQVLMYHGLYDQAGPIAPQQFLPTILKDGTLDTLLVLVNKLLGRLR-RRSNQADRLLPSPTRPVPAHTTTSTTDGPGSVVFGLCSSAVAITPNADASFSSPIACDVQDPDGAHLNSKIDHEEEGRGEGGQQTEDLPLCKADAILARALLCPAGAAYVFSMTRRRRKRAERAAVSDAGALCTGGRGEERERDAPAAERGDLSWVTVEQGVWAAQRVVEELTAWK---RGQARG---------KDPSLKRYPCARGALEALAIYGSGSHREGLRSAVIEARS 926
            ++P+WSVPCP NVT+CCIADI+G+  QEVVM T +G V+VL ++ N E+ K  +       +    G    GD    SDV+ SS A A +R  TP+  E  + +    LA D D   A  +  +  S+           P +  + +D +              TP++  T+     AA T        L+PHLK LLELK    VTSLS++  P        S  SR      P A+A     S++    G                  G  T    ++ P GG G        T   +      GVY AVGL++G+V+VMRLSS+R  +  LDL+  S R  +L  ++++ A         GSAAG                + +     +  S  +P A+   GG + + + +  +  R    L+LD  + G ++            A  T           W VP D P+AD       W G GLVVG +        A  +  + TP    TPL      GH + N   RG               +  G    S    + DGR                        +    +F R+D+        H +   E+L V CSW G T +FDAEG  C  FD    L  P+ AFVAGD+TT  G+T P LVY+   G+V+ YHGL +Q     P QF+P ++KDG++D L  L+  L  RL+ R S QA  L PS T P  A                  S  V +     +S  + +A        A  N   D E            D  L  +DAIL RA+LC +G       T RR +R  R + +D GA C+      R R+  A   G+ S +TV +G  A  RV++E+ AW+   RG  R           +P+L  +PC RG LEAL+ +GSG  R+ LRSA+ E+++
Sbjct:  130 VNPVWSVPCPKNVTSCCIADIDGDKMQEVVMGTREGGVHVLKIDFNQEQHKGKDEGVKTTEKSGWAGGVSTGDT-PRSDVFCSSPA-AQSRHSTPTADEPGLER----LAQDGDESDATPNPVRGPST----------GPSKSAYWEDRK-----------SMETPDS--TNAPGVVAADTQPF----SLSPHLKPLLELKAQDAVTSLSIVFVPEISSMPSTSITSRSGEGVAPPATAQADGNSDNVDGSG-----------------RGLTTCPPHEDRPQGGSGSMPALASRTDVMEQGASAAGVYVAVGLDTGVVEVMRLSSQRVGTRILDLVIASERSDRLSSISDAAAAADSHPAADGSAAGDTLGGGLSRLSSDDRDAHV--CLRSETSASQPAAE---GGPAAKLSGESNTMSR----LRLDRDEVGNQEKRVLPGAAAAAVATATAAGLVASVLCGWHVPADSPSAD------SWAGRGLVVGFSDTE-----AGTSPFAETPR---TPL------GHTSGNVPTRGWGSKTI---------EGVGAGASSSQTGSGDGR------------------------QEALHSFQRLDFE-------HEEGGTESLFVVCSWSGNTLMFDAEGMPCAGFDAEAHLPGPLTAFVAGDLTTPSGSTGPSLVYLGAEGKVVAYHGLPEQIESATPAQFIPILVKDGSMDKLKDLLTSLANRLQWRSSEQALPLFPSSTPPPDAQPADE-------------SECVQLEDGTGSSGPAEVATAA-----AAANIFSDDE-----------PDAALSLSDAILTRAVLCSSGLVVALGSTARRNER--RKSTADCGA-CSFDDARWR-REMRALAEGEGSTITVGEGAAAIDRVLKEMQAWQTRGRGSERPVRPLSPLLPAEPTLTHFPCLRGTLEALSCWGSGPRRDSLRSALKESKA 937          
BLAST of mRNA_H-paniculata_contig5200.12553.1 vs. uniprot
Match: D8LTG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG0_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 6.820e-45
Identity = 130/361 (36.01%), Postives = 182/361 (50.42%), Query Frame = 0
Query:  572 TEVPFFAFHRMDYPNGLGALGHPDDEKETLLVACSWGGITFLFDAEGGHCIAFDPGPFLEHPVKAFVAGDVTTGPGTTEPCLVYVTDGGQVLMYHGLYDQAGPIAPQQFLPTILKDGTLDTLLVLVNKLLGRLR-RRSNQADRLLPSPTRPVPAHTTTST-----TDGPGSVVFGLCSSAVAITPNADASFSSPIACDVQDPDGAHLNSKIDHEEEGRGEGGQQTEDLPLCKADAILARALLCPAGAAYVFSMTRRRRKRAERAAVSDAGALCTGGRGEERERDAPAAERGDLSWVTVEQGVWAAQRVVEELTAWKRGQARGKDPSLKRYPCARGALEALAIYGSGSHREGLRSAVIEARS 926
            TE    +F R+D+    G         E+L V CSW G TF+FDAEG  C  FD   +L  P+ AFVAGD+TT  G+T P LVY+   G+V+ YHGL +Q     P QF+P ++KDG++ TL  L+  L  RL+ R S QA  L PS T P  A     +      DG GS              +  A  +S  A ++   D                       D  L  +D+IL RA+LC  G     + T RR +R  R + +D+G  C+      R R+  A   G+ S + V +G  A  RV++E+ AW   + RG++P+LK +PC RG LEAL+ +GSG  R+ LRSA+ E+ +
Sbjct:  232 TEEALHSFQRLDFEREEGGT-------ESLFVVCSWSGNTFMFDAEGMPCAGFDAEAYLPGPLTAFVAGDLTTPSGSTGPSLVYLGAEGKVVAYHGLPEQIESATPAQFMPILVKDGSMGTLKDLLTSLANRLQWRSSEQALPLFPSSTPPPDAQPADESECVQFADGTGS--------------SGPAEVASAAAANIFSDD---------------------EPDTALSLSDSILTRAVLCSPGLVVALASTARRNER--RKSTADSGG-CSFDDARWR-REMRALAEGEGSTIKVGEGAAAIDRVLKEMQAW---ETRGREPTLKHFPCLRGTLEALSSWGSGPRRDSLRSALKESEA 543          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5200.12553.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG01_9PHAE1.130e-6630.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTG0_ECTSI6.820e-4536.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031793Integrin-alpha FG-GAP repeat-containing protein 2PFAMPF15907Itfg2coord: 538..666
e-value: 8.3E-9
score: 34.9
IPR031793Integrin-alpha FG-GAP repeat-containing protein 2PANTHERPTHR16317INTEGRIN ALPHA REPEAT DOMAIN-CONTAININGcoord: 536..667
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 801..819
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..800
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 820..926

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5200contigH-paniculata_contig5200:1570..11505 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5200.12553.1mRNA_H-paniculata_contig5200.12553.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5200 1457..13292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5200.12553.1 ID=prot_H-paniculata_contig5200.12553.1|Name=mRNA_H-paniculata_contig5200.12553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=927bp
MWDSSFRAHETYVPTMHPLWSVPCPPNVTACCIADINGNDRQEVVMATSD
GCVYVLSVEVNAEEDKQMENDPDREMQRTPQGTSLVGDAYANSDVYSSSS
AEAPARGLTPSIAEDAINQAAHFLAHDEDAPSAMLDGTQSSSSIGGSGEE
DKPRPIEYIHVDDLRFPGQDHPPAGSGSTTPEARATSWSATNAATTAELP
SRAPLNPHLKTLLELKVSGVVTSLSLISFPGSAGSRYNRRTTPNASASTH
SYSEDTVPRGPDDSKLSPAVNENRQDNCGTATASVSKNPPSGGGGDGVTG
PAKDEYCVGGVYAAVGLESGIVQVMRLSSRRSESGRLDLISGSGRQLFDV
AESTAGSAAGAAGHSSTSTSTSHHHASTIPRFFYAAASEGRPRADSRTGG
ESLEHACDEKSGGRESGSLKLDAQDSGAEQAAGTGGGGEESEDDQWWVPV
DPNADIPLSMHGWTGSGLVVGLAPPHAHGYSAADNVVSATPTGAGTPLSH
HNLSGHGTSNRGRRGGSSSGGRDSGNVGGRQVYGDAQRSFGVCTADGRVC
CCRVVSTAGGLPQWKRMWARQTEVPFFAFHRMDYPNGLGALGHPDDEKET
LLVACSWGGITFLFDAEGGHCIAFDPGPFLEHPVKAFVAGDVTTGPGTTE
PCLVYVTDGGQVLMYHGLYDQAGPIAPQQFLPTILKDGTLDTLLVLVNKL
LGRLRRRSNQADRLLPSPTRPVPAHTTTSTTDGPGSVVFGLCSSAVAITP
NADASFSSPIACDVQDPDGAHLNSKIDHEEEGRGEGGQQTEDLPLCKADA
ILARALLCPAGAAYVFSMTRRRRKRAERAAVSDAGALCTGGRGEERERDA
PAAERGDLSWVTVEQGVWAAQRVVEELTAWKRGQARGKDPSLKRYPCARG
ALEALAIYGSGSHREGLRSAVIEARS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031793KICSTOR_ITFG2