mRNA_H-paniculata_contig520.12551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig520.12551.1
Unique NamemRNA_H-paniculata_contig520.12551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.650e-78
Identity = 153/275 (55.64%), Postives = 181/275 (65.82%), Query Frame = 2 
Query:  125 MEHLLENYGEISDEEVEPSAAVEVPEHQQPSAGASSNELLQQLPPDVLTMFNDS-----------EYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGR--GKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVH 910
            M+HLLE Y   S E+       E  E + P+       +L  LP ++LT+F DS           EYDL+ ERRRA+ERA + +W RRFPHERGNWPT VF+ VPNSA F SMAEASV  FRQ+LA AW + +G   G   GKKR R+ R  S     S +G       DPPE+V+NDM+PS  QHLSLSKT  LRAHQI+PFV+ LKEA  SSR FT S VSGYDVLVNEDK+RSFVCLRVRGGR +VL LI K D +M RFKQ  YYE  ++H
Sbjct:    1 MDHLLEAYASSSSED-------EKIEEKDPNPS-----VLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKL-----DPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.190e-72
Identity = 169/375 (45.07%), Postives = 201/375 (53.60%), Query Frame = 2 
Query:  125 MEHLLENYGEIS--DEEVE---PSAAVEVPEHQQPSAGASSNELLQQLPPDVLTMFNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGR--GKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVSSYVGSS--------------------------------FDHAKAGTEREDKCDDPDRDGSNSESEEDVAAPSEVCVDVSTVVCKAGTTLFQAPLS 1132
            M+HLLE Y   S  DE++E   P  AV                 L  LP ++LT+F DSEYDL+ ERRRA+ERA +  W RRFPHERGNWPT VF+ VPNS+ F SMAEASV  FRQ+LAAAW DR+G   G   G+KR  + R  S     S +G       DPPE+V+N+M+PS  QHLSLSKT  LRAHQIDPFVQ LK+A  SSRR                         VRGGR +VL LI K D +M RFKQ  YYE+P+VHVS+ASV GDVS+YV SS                                                         S +DV  PSEVC+ V  V+CKAGTT F+APL+
Sbjct:    1 MDHLLEAYASSSSDDEKIEENDPKPAV-----------------LGALPSELLTLFKDSEYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKL-----DPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSRR-------------------------VRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSRVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSDDV--PSEVCLTVDVVMCKAGTTYFEAPLA 326
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.190e-22
Identity = 81/257 (31.52%), Postives = 119/257 (46.30%), Query Frame = 2 
Query:  329 AKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNP-----------------------SMH---------QHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVV------SGYDVLVNEDKSRSFVCLRVR-GGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVSSYVGSSFDHAKAG 982
            A    W R  PH  GNW T V++ VPN+ E V MA+A V + R++L        G   G  +K+                           E+V ND+NP                       S H         QHLSLS+TV LR++ ++PFV  L +A + +R FT  +        G  +LVN+D+SRSFV + V  GG   + Q++   D ++ +++QP YY   + H+S+A+V GDVS   G+    A+AG
Sbjct:  132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKK---------------------------ELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSGQHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVSEAWGAG---ARAG 358
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A6J3DQK9_AYTFU (U6 snRNA phosphodiesterase n=14 Tax=Anseriformes TaxID=8826 RepID=A0A6J3DQK9_AYTFU)

HSP 1 Score: 100 bits (250), Expect = 2.210e-20
Identity = 70/231 (30.30%), Postives = 106/231 (45.89%), Query Frame = 2 
Query:  251 LPPDVLTMFNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVS 943
            +P  VL MF + E     E R A++RAK     R FPHERGNW T V++      EF+ + +  V   R                                                   ++ +      H+SLS++VVLR H I+PFVQ+LKE  +S  RF   V +   V  N++K+R+F+ L V  G   +L+L+ + D +M+ F  P +Y+DP  H+S+A   GD++
Sbjct:   42 VPECVLAMFREQE----EEERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR-------------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRF-FCVANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 218
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A8B9SV39_ANAPL (U6 snRNA phosphodiesterase n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=A0A8B9SV39_ANAPL)

HSP 1 Score: 102 bits (253), Expect = 7.690e-20
Identity = 70/231 (30.30%), Postives = 106/231 (45.89%), Query Frame = 2 
Query:  251 LPPDVLTMFNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVS 943
            +P  VL MF + E     E R A++RAK     R FPHERGNW T V++      EF+ + +  V   R                                                   ++ +      H+SLS++VVLR H I+PFVQ+LKE  +S  RF   V +   V  N++K+R+F+ L V  G   +L+L+ + D +M+ F  P +Y+DP  H+S+A   GD++
Sbjct:   94 VPESVLAMFREQE----EEERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR-------------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRF-FCVANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 270
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A7S2UZE3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZE3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.740e-19
Identity = 59/167 (35.33%), Postives = 86/167 (51.50%), Query Frame = 2 
Query:  641 HLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGD-VSSYVGSSFDHAKAGTEREDKCDDPDRDGSNSESEEDVAAPSEVCVDVSTVVCKAGTTLFQAPLSSD 1138
            H+SLS+  VLR H IDP V AL++A SS+  FTV V   ++VL N+  +RSFVCL++  G  L+  L+ + D ++ +F+ P YY++   H+S+AS  GD +   V  S D              P R                + V V +++CK G   F   LSSD
Sbjct:   71 HISLSRPFVLRYHHIDPLVAALQQALSSAPSFTVEVQGEWEVLTNDQGTRSFVCLKIGPGSSLLEDLVDRVDGVLQKFRAPVYYQEKKFHISVASALGDGLKMAVKKSTDDV------------PGR-------------MKSLYVHVDSILCKIGNKEFNISLSSD 212
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A8B9V065_9AVES (U6 snRNA phosphodiesterase n=6 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9V065_9AVES)

HSP 1 Score: 97.1 bits (240), Expect = 1.820e-19
Identity = 67/224 (29.91%), Postives = 102/224 (45.54%), Query Frame = 2 
Query:  272 MFNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVS 943
            MF + E     E R A++RAK     R FPHERGNW T V++      EF+ + +  V   R                                                   ++ +      H+SLS++VVLR H I+PFVQ+LKE  +S  RF   V +   V  N++K+R+F+ L V  G   +L+L+ + D +M+ F  P +Y+DP  H+S+A   GD++
Sbjct:    1 MFREQE----EEERGAEDRAKHGGRVRCFPHERGNWATHVYLPYKVQEEFLELLDLLVSHAR-------------------------------------------------TYVSSLTAMEEFHISLSQSVVLRYHWINPFVQSLKERLASYDRF-FCVANQMKVYTNQNKTRTFIGLEVSAGHFQLLELVSEVDKVMEEFDLPTFYKDPSFHISLAWCVGDLT 170
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A6P8QU68_GEOSA (U6 snRNA phosphodiesterase n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QU68_GEOSA)

HSP 1 Score: 97.1 bits (240), Expect = 6.810e-19
Identity = 72/231 (31.17%), Postives = 105/231 (45.45%), Query Frame = 2 
Query:  251 LPPDVLTMFNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVS 943
            +P  VL MF DS+     E    D+ A+     R FPHERGNW T+V++    S EF  + +  +   R          YG                                     + L  M      H+SLS+TVVLR H I+PFVQ+L++   S  RF   VV    V  N++K+R+F+ L V  G   +LQLI + D +++ F    +Y++P  H+S+A   GD+S
Sbjct:   60 VPDSVLNMFQDSK-----EEHHCDDSARHGGRMRNFPHERGNWATYVYMPYETSEEFFDLLDLLLTHTRT---------YG-------------------------------------LSLVRMEEF---HISLSQTVVLRHHWINPFVQSLRDRLLSVHRF-FCVVDEVKVYTNQEKTRTFLGLAVSSGHMQILQLISEVDRVLEEFNLQTFYKNPSFHISLAWCIGDLS 235
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A8C8RU18_9SAUR (U6 snRNA phosphodiesterase n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8RU18_9SAUR)

HSP 1 Score: 95.9 bits (237), Expect = 7.340e-19
Identity = 75/249 (30.12%), Postives = 113/249 (45.38%), Query Frame = 2 
Query:  224 ASSNELLQQLP-PD-VLTMFNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGDVSSYVGSSF 964
            A S+ LL +LP PD VL MF D E +++      D+  K     R FPHERGNW T++++      E + + E  +   R+                                                + L  M      H+SLS++VVLR H I+P VQ+LKE  +S  RF  S  S   V  N+ K+R+FV L V  G   +L+L+ + D +M+ F  P +Y++P  H+S+A   GD++  +   F
Sbjct:    6 AQSSVLLPRLPVPDSVLNMFRDQEEEVT------DDSTKHGGRVRNFPHERGNWATYIYLPCEIQEELLELLELLISHARRHA----------------------------------------------VSLTAMEEF---HISLSQSVVLRYHWINPLVQSLKERVTSFYRF-YSTASQVKVYTNQHKTRTFVGLEVLCGHAQLLELVSEVDKVMEEFGLPTFYKNPSFHISLAWCVGDLTDKLEGHF 198
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BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL)

HSP 1 Score: 95.9 bits (237), Expect = 1.120e-18
Identity = 65/204 (31.86%), Postives = 95/204 (46.57%), Query Frame = 2 
Query:  329 AKDTQWTRRFPHERGNWPTFVFVAVPNSAEFVSMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGTRKSHDKDPPEIVLNDMNPSMHQ-HLSLSKTVVLRAHQIDPFVQALKEAFSSSRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRFKQPCYYEDPVVHVSIASVAGD 937
            A   +WTR FPH  GNWP+ V + VP + E  +  +  V+   Q+                                              E+ L  M     + H+SLS+  VL   QI+PFV+AL+ A    RRF ++V     VLVN++++RSF+ L++  G+   ++ +R  D  M  F+ P YYEDP+ HVSIAS  GD
Sbjct:   42 ASSVRWTRAFPHVEGNWPSHVKINVPLTPELQTHCQR-VITATQRFVG------------------------------------------DEVELIPMASEEEELHMSLSRPFVLTYEQIEPFVEALRAALKWRRRFALTVEEP-TVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIASALGD 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig520.12551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL4_ECTSI1.650e-7855.64U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6W9_9PHAE1.190e-7245.07U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
A0A4D9D6D2_9STRA2.190e-2231.52U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochlorops... [more]
A0A6J3DQK9_AYTFU2.210e-2030.30U6 snRNA phosphodiesterase n=14 Tax=Anseriformes T... [more]
A0A8B9SV39_ANAPL7.690e-2030.30U6 snRNA phosphodiesterase n=1 Tax=Anas platyrhync... [more]
A0A7S2UZE3_9STRA1.740e-1935.33U6 snRNA phosphodiesterase 1 n=1 Tax=Fibrocapsa ja... [more]
A0A8B9V065_9AVES1.820e-1929.91U6 snRNA phosphodiesterase n=6 Tax=Galloanserae Ta... [more]
A0A6P8QU68_GEOSA6.810e-1931.17U6 snRNA phosphodiesterase n=2 Tax=Geotrypetes ser... [more]
A0A8C8RU18_9SAUR7.340e-1930.12U6 snRNA phosphodiesterase n=1 Tax=Pelusios castan... [more]
A0A8K1FRB5_PYTOL1.120e-1831.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig520contigH-paniculata_contig520:6552..13074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.0
Seed ortholog evalue4.8e-68
Seed eggNOG ortholog2880.D7FRL4
Preferred nameUSB1
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838
EggNOG free text desc.U6 snRNA 3'-end processing
EggNOG OGsKOG3102@1,KOG3102@2759
Ec32 ortholog descriptionU6 snRNA phosphodiesterase Usb1
Ec32 orthologEc-12_002600.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1458
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig520.12551.1prot_H-paniculata_contig520.12551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig520 6866..12950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.7716744-UTR-H-paniculata_contig520:6551..68651622930515.7716744-UTR-H-paniculata_contig520:6551..6865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig520 6552..6865 -
1691481327.1790464-UTR-H-paniculata_contig520:6551..68651691481327.1790464-UTR-H-paniculata_contig520:6551..6865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig520 6552..6865 -
1622930515.889465-UTR-H-paniculata_contig520:12950..130741622930515.889465-UTR-H-paniculata_contig520:12950..13074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig520 12951..13074 -
1691481327.2490509-UTR-H-paniculata_contig520:12950..130741691481327.2490509-UTR-H-paniculata_contig520:12950..13074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig520 12951..13074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.7869043-CDS-H-paniculata_contig520:6865..71141622930515.7869043-CDS-H-paniculata_contig520:6865..7114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 6866..7114 -
1691481327.1906102-CDS-H-paniculata_contig520:6865..71141691481327.1906102-CDS-H-paniculata_contig520:6865..7114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 6866..7114 -
1622930515.8055782-CDS-H-paniculata_contig520:7547..77101622930515.8055782-CDS-H-paniculata_contig520:7547..7710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 7548..7710 -
1691481327.1992254-CDS-H-paniculata_contig520:7547..77101691481327.1992254-CDS-H-paniculata_contig520:7547..7710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 7548..7710 -
1622930515.8207057-CDS-H-paniculata_contig520:8109..82821622930515.8207057-CDS-H-paniculata_contig520:8109..8282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 8110..8282 -
1691481327.2136002-CDS-H-paniculata_contig520:8109..82821691481327.2136002-CDS-H-paniculata_contig520:8109..8282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 8110..8282 -
1622930515.8351552-CDS-H-paniculata_contig520:9858..100161622930515.8351552-CDS-H-paniculata_contig520:9858..10016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 9859..10016 -
1691481327.2228494-CDS-H-paniculata_contig520:9858..100161691481327.2228494-CDS-H-paniculata_contig520:9858..10016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 9859..10016 -
1622930515.8515835-CDS-H-paniculata_contig520:10626..107401622930515.8515835-CDS-H-paniculata_contig520:10626..10740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 10627..10740 -
1691481327.2312872-CDS-H-paniculata_contig520:10626..107401691481327.2312872-CDS-H-paniculata_contig520:10626..10740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 10627..10740 -
1622930515.8730001-CDS-H-paniculata_contig520:12787..129501622930515.8730001-CDS-H-paniculata_contig520:12787..12950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 12788..12950 -
1691481327.2398384-CDS-H-paniculata_contig520:12787..129501691481327.2398384-CDS-H-paniculata_contig520:12787..12950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig520 12788..12950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig520.12551.1

>prot_H-paniculata_contig520.12551.1 ID=prot_H-paniculata_contig520.12551.1|Name=mRNA_H-paniculata_contig520.12551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=340bp
MEHLLENYGEISDEEVEPSAAVEVPEHQQPSAGASSNELLQQLPPDVLTM
FNDSEYDLSVERRRADERAKDTQWTRRFPHERGNWPTFVFVAVPNSAEFV
SMAEASVLDFRQKLAAAWADRYGSVAGRGKKRGRESRSSSKDVQKSQSGT
RKSHDKDPPEIVLNDMNPSMHQHLSLSKTVVLRAHQIDPFVQALKEAFSS
SRRFTVSVVSGYDVLVNEDKSRSFVCLRVRGGRHLVLQLIRKSDTIMDRF
KQPCYYEDPVVHVSIASVAGDVSSYVGSSFDHAKAGTEREDKCDDPDRDG
SNSESEEDVAAPSEVCVDVSTVVCKAGTTLFQAPLSSDK*
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mRNA from alignment at H-paniculata_contig520:6552..13074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig520.12551.1 ID=mRNA_H-paniculata_contig520.12551.1|Name=mRNA_H-paniculata_contig520.12551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6523bp|location=Sequence derived from alignment at H-paniculata_contig520:6552..13074- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGTCATTTTCCAGTAAACTCGGATCCCATGTTCTGTCTTTGTCTCTTGT
TTTCTCTCTTCCTGATGGAACTCGATCTAGCCTGTTCTTTAGCCTGTCAA
CGGTGAAAACAAGGGGTTGATGGGATGGAACACTTGCTGGAGAATTATGG
AGAAATATCTGACGAGGAGGTGGAGCCCTCGGCTGCGGTTGAAGTGCCAG
AACACCAACAGCCTTCTGCTGGTGCAAGCTCGAACGAGCTTCTCCAACAG
TTGCCTCCCGATGTATTGACTATGTTCAACGACAGTGGTAAGTTTGCAGT
CGAGGGTAGCTACTTTAACATCCTCCATGCTGTTTGTGAATTTGAAGTTC
GATACATTCTACAGTAACCTCTGATACCCGATACCCCCGTTCGGGTGAGA
AATGAGGAAGGTAATACTGAGAAGGTATGCGTCCATGTTCATCGATGTCT
GCTGAGTGTACACTTGATGGGTGAACTTTGTCGGAGATGCACTTGCCGGG
CAAGCAATTGTTTGGCAAGTCTTCAGCAGCAGCACTGGGCAAGGAGTAAA
TTACACGCACATGTTGATACATGTCCTGATTTTCAAATATTTAAACGATA
ACCTTCAATCTCGTGATTCTATTGAACAAGAATCATCATGGTGATGGATG
CTCGGTGTGTCGCCCATTTTAGTCACTTTTGGATAGAGGACGATATGCTG
GCTGCACTAGAGCACCTTCTCTGACTTTATGATGCCACGAAACTGTTCAC
CTCGCTGCTTATACTTGTATCTTACATGAAAATACTCTCTAAATAGTTTC
TGAGTGTTCAACGCGTACATGCAATGTCAAGTAGCACACTTGGAAAGTCA
TCAAAACGCTGCAGTATAGAGGAAGATTCTGGGTGACAAAGAAGCCCCCA
CGGGGACTGATAGTATTCAAGGCTTTTCACATAACAGACACTTTCTCGCA
TGACGAACAGCGAACCGTGGTTATGTGAAAAAGGCACATGTATTTTTCGG
TGATGTGTAAGACTGTGTATCAACCAAGTTCAACAAATGAAAATCGAAAT
CGATTTTCGAAAACATACCATTTTTTGTATTAATGAATCACAGCATCACT
GGACCGCGGCGCGAATAACTGTGGCTCATGGTTAATTCTTTGAACAGGTG
GTTGGGTTCAATAATTTCGCACAACGGAACACGCATGAGCGACACCAACA
GATTAAGAGCTCCAGCACACGCATACTAGCTCTGACGATAGCCCTTGCTC
AGATGCACACGCCAGACAGTGTTTGGCATGAATTGGTCAAGTATTGGAGA
AGCTACAGCAGTGATTCGCGTGACGTTGGGAACATAACAGAACTGTTTTT
CTTATCGTTTGTCACAAATCTTCGATATCTCAGACTTGGCAAGGACGCCA
AACATCGCCTCTCGGGTTTTACACATATGCATGGCACATATCAGTGCTTT
ATTGACCCCTAGCCGCTACTACAGTTTACTAACTACTGCAGACAGTCAGC
ACAGTGCGGGGCAGGAGGCGCACACAACAGCTCAGCAACGGAATACAAGC
ATCGGGACGTATGCAAAACAACATTTTTGCATGACGGTCATAACACATGT
CTTTTTCACATGCCAGGTCCACGAACCAGCTCGCAGTCGGTCATGCAAAA
ATGTTTTCCTGTTGGTCGCAGGTAGGTCGATTTTCGGTCCACTACTTGAC
GGTTTGGGACGTTTTTTCCCAACATTAAAAGTAAAGTGTCGGTTCATGAA
AATTTTAATTGCGGTTGGGCAAAATTTAGTTGCGTATCGGGGAAAATATT
ATCGTTCGGGGTATTCTACACATGACCAGCAGTTTACACATGATTACCAC
ATTTAGGCCGTGTATTAACGAGGTGAAAAAAATCGAACTGAGAACATGGA
ACTTTCTTCAACCTCTATGATTAATCCGTACCTCTTCGAGCACCCCCAGA
AAATAAGAATAATTCGATTTCATAATTCGATTTACAAAAGTCAAAAGTCC
CCCGGGACATTTGTAAATCGAAATTGAGGCAAGTCACATTTGTAGGGGAA
CAAAATAGCGAACAAGGCAAGACCGGTAGAGTTGCAAACAAATGCAGGAC
TGCCCGTCATGAGCATGACAACTTCACTGCCGCTCGTACAACATAAGGTA
GCTCGAGCCGTAGCTCTTGATCAACTGCACCATGTACTTGGTTTGGGTTG
AATCTGTTCCAAATTGATGACCCAACCGTGCGTAGAGACAATATTTGCAA
AGCAAGGCTATCGGTCATCATAGCTCACATAAATGACGATGGCTGGCACG
ACGACTGGCACGCTGTGCTTCCCTATTGGTGCAGAGTATGACCTGAGCGT
GGAGCGACGACGCGCCGACGAGCGCGCCAAGGATACGCAATGGACTCGCC
GTTTTCCGCACGAAAGAGGCAACTGGCCCACTTTCGTGTTCGTGGCGGGT
GAGAGCTCTAGGGTACCTCTTGATGTGAATCTGGTATCGTGTTACTGTTG
GGCAACTGGTACAGGATGAAGCGTGGGATTGGATCACCTACGAAATAAAT
AGTGAAATAGTGCGTTGCGCTTCACAGCATAGAGAGTAGCTGTATCGGTA
TTATTTTCTCCACGAATTATTTTAAGTTTATCGTGTAGATTGAGGTAGAG
GCGCTCGGTAGGCAGTCGGCCATGCCCACAGTGTCAGGTTTAGTGCACGG
CCATCTTCATTAACCTTCCCTGTGCGAGGTCCTGTTCTTGGATTAAGTCA
TGGCTTGTGCTTTTTCATGACTTGGGCGAGTGTAAATCCATGACTTCACA
GATATGCTTAATTAAAAAAACGCTGCGCCCAAGTAGACAAGCGGTTTTCT
CGTACCGTCGTTGCAAGACCAAATCAAGATATCAACACGAAAAGGTGAAA
ACGACAACTTGTTCAACTAGTATCAAGTGCATCCGTTACGACAGGACAGG
GTGTTTTACGTCTATCCTATCCTCTTTTGGCTAGATGCCGACAGCACTTC
GTTCAAATGTATACCACGGCGGCTGCAACATGCCGATTTGCGTGCCCATC
AATCACAGTACCCAACTCCGCCGAGTTCGTGAGCATGGCGGAAGCGAGCG
TGCTAGATTTCCGACAAAAGCTGGCTGCGGCTTGGGCGGATCGATATGGA
TCCGTTGCTGGCCGCGGCAAGAAGAGAGGAAGAGAGAGTCGATCATCCTC
CAAGGACGTGCAAAAGGTACTCTGTTTTTGGTCCCATCGGCTCAGCTAGA
AGGGAAAGCTTTACTTTCCCACATAACACACTCTGCTGAGAATACTGTGA
ACATACCAGGTTTCGTGCCGTTTCAAAGTCGGCCTTACATCCTCCATCGC
CACGTACCGGTCACAAGGATCTATCATGAGGTAGGGGCCAACACCGTCTA
AGACGGTGGGAATAGTCTGGAATTTCACTGGACTAGAAATTTCCTATGGC
TGAGAGTCGTAGCTACTGGCCACTATTTCGACTCTCTGGAGTCACCCTTC
TCTACTGGTCTTTGGTCCCTTGTACCTTTGCTGTGACACAGTGAGACATG
GTGAGCTAGCGACAAGGTGAGAATTGCGTCGTTCGGTTTTGTTTTAGATA
AGATAAGCCCACAACGGTTGCCTGGCACCCGCCTACAAGCTGGGTCCAGC
TCGAAAGGCCAAAATCGTTGAATTCGAAAATCTCCTGCATTTTTTTTTCG
CATTTAGATTATAATGTTTAGGGTGGATGTCTATAAAGAATTCGGAGAAT
CAGTCATTGCGGCCGTTCTTGTGAAGGTTTTGTTATGTTCAGAAAATTAT
GGCTTTTAGCAAAACCTACGCAAGAAATCCCTGTTGTATAAAACTTAGGA
ACATCTTTGCACCCAAAACTGTAGTCAGTCTGAGCTTGTCCCTCGTCGTA
ACTTTTGAAAGGCAGAATTAAGCATGAAGTGACATACCAAAATTTGTAGC
AACACCTTCAGTAGCTACCTGCTGACTGCCCCTTTTTCGTGTAATAATAA
ATGTCGAAATGCTGAAAGTGCCTTGGTGACCAATCAGAGTGCGTGGTGCA
CTCCATGGTGCTTACAAATTGGCAGAGAATTTACCACATGTGTGTCCAAG
TTCTCGCAGTGGATCATGATATTTGGTCTATGGAAGGTTATTGGCGTCTC
TTGCTTGGCCCAGCTCGCAGACCACGTCCGTTTTATTTTCGAATTGTGTT
ACTAGTACCAGGCGCGCGCCGGGGTTTCCCTAGGACCGATGCCGTGTTTG
GTTGTTGCTGCAAGAATTATCTCTGTAAAACCCGCGATAAGCCGAATATT
ACATTGGGCACTACAATTGTTGACGTCTTCACTGTCTCGATCGCCTCTTG
TGATTTTCGTGCTTGGCGCCAGCATGATGATGCTTTGGGCGCTCAAATGA
CTGCATACTGCGGTCTCCCCTTGTTGGCAATGACCAGGTTGGGGTTAAGA
TGCGAATGTATTCGGTCAATTTTTCCACACCTAAGTTCCGTGTTCGTTCA
TCTCCCAATTGTTCGATAGAGAGTTACGTACTGAGTATAACATATAGGGA
AAATATTCGAGAGATCACTCGGACCCCTAGATCCCCCTAAGATACTTAGC
TTTGGTCAGCGTTTTTGCACCCCAGTGTCGCCTTGAAAACTCGTCAACGG
ATGTCATGCTTTTCATGCTACACTATCTGTCAGACAAATCAGGCACAATC
CCCGCCGTTGATGTGTCACTAGCCTGACTTACCGTTTCTCTTTTTTTTTT
ATCTCGTGCCGTTTCAAATGCTGCAAATCTTGATCACCTCAGAGCCAGAG
CGGTACGCGAAAATCGCATGATAAAGATCCACCAGAAATCGTGCTAAACG
ACATGAATCCGTCTATGCACCAACACCTTAGCCTCTCGAAAACAGTGGTG
CTTCGAGCCCATCAAATAGATCCCTTCGTGCAGGCTCTGAAGGAGGCATT
CTCGTCTTCTCGCAGGTATGTTCAAGCACTGCACGAGTACTTCTTTAATG
TATCGTTGCAGCCCGTTTTTTACAGGCATCTTCTTGTACCCTATATTCCA
GCATGGGTAGGCCGTTGCCATTACTTGGACTGTAGCAGTGTCAGGCTTGG
ATCTAGGGTTAGGGTAACGCCAGCACCTCGCCCTTCCTTCTCATATTCCA
CCAAAAAAAGCGGGCGCTCCTGCCATCGGTCTCAACGTCATACGTTTTTT
CTCTGTATTCAGATTATTGAGTGTCCCATTTTAATCCAGGTGCGTTGTAA
CACTGATGTATTGTACAAATGTTATGACAAGGTGACTTCACCGATCACTG
CATCGCGTGCGCTGTAAACACGGCGCCACACCAGCAATAAATCCAACTAT
CCCGTTATGGCCAGGTTCACTGTATCCGTCGTAAGCGGCTATGATGTTCT
TGTTAACGAGGACAAGAGCCGATCGTTTGTGTGTTTGAGGGTACGGGGCG
GGCGTCATCTCGTCCTGCAGCTCATAAGGAAGAGCGACACTATTATGGAC
AGATTCAAGCAGCCATGCTACTACGAGGTATGTAATCATAATCGTCACTG
TCCTTCACCAAGTCCTTTTGTGCCCATGCCAAATGAGCATGAAAAAATAT
CGCCGTCGTTGCCGGTCCATGGACCTTTGAATCCTCGCCCCATTCCGCGG
CGTCATAAAGTCCCACATGACACCAACTACGCGTCTATTCATACAGCTGA
AACGGGGTGATTCTTCAACACTACAAGGCGCACTGCGAAACAGTACGTTT
GACCAGAGCACCAGGTCGATATTGGGGATACGTGATGACAAGCCAGACAA
CTTCATAATGCCACACATGCGCCGAAATTAAATGCACTGCATGCTTCATA
TTAACTCTGCACCAACGTCGTCGTTCCCTTGACCCCTCTGTGTGTTCATG
ACTTCGCCCGCACCCTTCCATCCGCCCCCCCGGTCCCCACTCTCCGGAAT
CACTGGGAAGGATCCCGTTGTGCACGTGAGCATCGCGTCTGTGGCGGGAG
ACGTTAGCAGCTACGTAGGGTCTTCATTTGATCATGCAAAAGCAGGCACT
GAGAGAGAAGATAAATGTGACGATCCTGATAGAGATGGCTCGAATAGCGA
AAGCGAAGAGGACGTTGCCGCGCCGTCGGAGGTTTGTGTTGATGTCAGCA
CGGTAGTGTGTAAGGCTGGGACGACCTTGTTTCAGGCGCCGCTCTCCTCA
GATAAATGACTGCTTATAGCAGCAGTCAGCTAGTGAAGTAAATATTAACG
GATGATACGATCAACTGAGGATACCTTTACCAATCAGAAGTATCGTTCGA
GGAAATCCTGAACGCTGCATGACTTCCCTTCGTAAAAATTGAAGGAAAAA
GCGAGCGAAATGGCTAAGCTTGCAACAAGAGAGCCTCGGCTGCCCGGATA
AACTATATGGGAGTGCACAAGACAGGATTCGCAAAAGTAGCCGCCAGCTA
CGAGGATCAATGGCCACACACCAATATATTAACTTGGCCAATATAATAAA
GAACAGGCCCCCTAAAAAAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig520:6552..13074-

>mRNA_H-paniculata_contig520.12551.1 ID=mRNA_H-paniculata_contig520.12551.1|Name=mRNA_H-paniculata_contig520.12551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2040bp|location=Sequence derived from alignment at H-paniculata_contig520:6552..13074- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACTTGCTGGAGAATTATGGAGAAATATCTGACGAGGAGGTGGA
GCCCTCGGCTGCGGTTGAAGTGCCAGAACACCAACAGCCTTCTGCTGGTG
CAAGCTCGAACGAGCTTCTCCAACAGTTGCCTCCCGATGTATTGACTATG
TTCAACGACAGTGATGGAACACTTGCTGGAGAATTATGGAGAAATATCTG
ACGAGGAGGTGGAGCCCTCGGCTGCGGTTGAAGTGCCAGAACACCAACAG
CCTTCTGCTGGTGCAAGCTCGAACGAGCTTCTCCAACAGTTGCCTCCCGA
TGTATTGACTATGTTCAACGACAGTGAGTATGACCTGAGCGTGGAGCGAC
GACGCGCCGACGAGCGCGCCAAGGATACGCAATGGACTCGCCGTTTTCCG
CACGAAAGAGGCAACTGGCCCACTTTCGTGTTCGTGGCGGAGTATGACCT
GAGCGTGGAGCGACGACGCGCCGACGAGCGCGCCAAGGATACGCAATGGA
CTCGCCGTTTTCCGCACGAAAGAGGCAACTGGCCCACTTTCGTGTTCGTG
GCGGTACCCAACTCCGCCGAGTTCGTGAGCATGGCGGAAGCGAGCGTGCT
AGATTTCCGACAAAAGCTGGCTGCGGCTTGGGCGGATCGATATGGATCCG
TTGCTGGCCGCGGCAAGAAGAGAGGAAGAGAGAGTCGATCATCCTCCAAG
GACGTGCAAAAGTACCCAACTCCGCCGAGTTCGTGAGCATGGCGGAAGCG
AGCGTGCTAGATTTCCGACAAAAGCTGGCTGCGGCTTGGGCGGATCGATA
TGGATCCGTTGCTGGCCGCGGCAAGAAGAGAGGAAGAGAGAGTCGATCAT
CCTCCAAGGACGTGCAAAAGAGCCAGAGCGGTACGCGAAAATCGCATGAT
AAAGATCCACCAGAAATCGTGCTAAACGACATGAATCCGTCTATGCACCA
ACACCTTAGCCTCTCGAAAACAGTGGTGCTTCGAGCCCATCAAATAGATC
CCTTCGTGCAGGCTCTGAAGGAGGCATTCTCGTCTTCTCGCAGAGCCAGA
GCGGTACGCGAAAATCGCATGATAAAGATCCACCAGAAATCGTGCTAAAC
GACATGAATCCGTCTATGCACCAACACCTTAGCCTCTCGAAAACAGTGGT
GCTTCGAGCCCATCAAATAGATCCCTTCGTGCAGGCTCTGAAGGAGGCAT
TCTCGTCTTCTCGCAGGTTCACTGTATCCGTCGTAAGCGGCTATGATGTT
CTTGTTAACGAGGACAAGAGCCGATCGTTTGTGTGTTTGAGGGTACGGGG
CGGGCGTCATCTCGTCCTGCAGCTCATAAGGAAGAGCGACACTATTATGG
ACAGATTCAAGCAGCCATGCTACTACGAGGTTCACTGTATCCGTCGTAAG
CGGCTATGATGTTCTTGTTAACGAGGACAAGAGCCGATCGTTTGTGTGTT
TGAGGGTACGGGGCGGGCGTCATCTCGTCCTGCAGCTCATAAGGAAGAGC
GACACTATTATGGACAGATTCAAGCAGCCATGCTACTACGAGGATCCCGT
TGTGCACGTGAGCATCGCGTCTGTGGCGGGAGACGTTAGCAGCTACGTAG
GGTCTTCATTTGATCATGCAAAAGCAGGCACTGAGAGAGAAGATAAATGT
GACGATCCTGATAGAGATGGCTCGAATAGCGAAAGCGAAGAGGACGTTGC
CGCGCCGTCGGAGGTTTGTGTTGATGTCAGCACGGTAGTGTGTAAGGCTG
GGACGACCTTGTTTCAGGCGCCGCTCTCCTCAGATAAATGAGATCCCGTT
GTGCACGTGAGCATCGCGTCTGTGGCGGGAGACGTTAGCAGCTACGTAGG
GTCTTCATTTGATCATGCAAAAGCAGGCACTGAGAGAGAAGATAAATGTG
ACGATCCTGATAGAGATGGCTCGAATAGCGAAAGCGAAGAGGACGTTGCC
GCGCCGTCGGAGGTTTGTGTTGATGTCAGCACGGTAGTGTGTAAGGCTGG
GACGACCTTGTTTCAGGCGCCGCTCTCCTCAGATAAATGA
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