mRNA_H-paniculata_contig52.12550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52.12550.1
Unique NamemRNA_H-paniculata_contig52.12550.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A6H5KF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF94_9PHAE)

HSP 1 Score: 714 bits (1844), Expect = 1.030e-247
Identity = 373/556 (67.09%), Postives = 436/556 (78.42%), Query Frame = 1
Query:  364 CRGIAGPASWSS--RSQRAWPLAETLG---GVEGGVEGQGWSSR-RMFAESVAERKTRRRL-CGR-------FGTTRAVGSDTSDTWDEIVDGVMEANGQGNNGDVKDANASTESWMKKRWRYALTKIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKSVXXXXXXXXXXXXXXXXXAADGVVEAG 1989
            C  +AGP  W+    +++A  L  T     G EGG    G   R R  A  V ER   +R+ CGR        GT  + G       +  V+ V E       G V++     + W+K+RWRYAL K+KKEPLQILTIP+SAACVGW+TNKLAVEMIFHPLVWRG+PLRV++GQPLGL+GWQGIVPAKAGVMAERMVDMVTTQL+DV++VF RLSP +VARLLGPEI++I Q + +DL P  +AW+PG F +GL PQ VDELKGLR +ML G+TKDMQ+ +T VLDLK+MVVGEML+DRSLMV+LFQRCGKAEFKFLVNSGFFFGFLLG++QMFVWLLYDKPWTLPAGGA+VGYITNW+A+KLIFEPVDP+K+GPFVLQGLFLKRQ+EVAADFAEFFS NVLTS KLW++++DGSRA AF+ELV+ RVVPFVSRASAVAGANLDP+  + LA RA  KL DHVHVLH+YTD+TLA+RETMTV MQKMSTRTFEGVLHPVFQE+EFTLI+AGA+LGAIAGFLQMLLSTK V                  ADGVV+ G
Sbjct:  124 CWSVAGPTPWADVGTTRQASSLVVTAAAPQGNEGGGPRLGGERRWRRRAGGVPERHGDQRVTCGREWHRLATVGTEGSGGDGEKKGSEGGVEAVGEDAAADVGGAVEEGKEKGDGWVKRRWRYALAKMKKEPLQILTIPVSAACVGWLTNKLAVEMIFHPLVWRGIPLRVVKGQPLGLLGWQGIVPAKAGVMAERMVDMVTTQLVDVDEVFRRLSPGQVARLLGPEIDSIVQSVYEDLAPGPLAWVPGSFGSGLVPQAVDELKGLRRNMLVGITKDMQKQVTHVLDLKKMVVGEMLRDRSLMVSLFQRCGKAEFKFLVNSGFFFGFLLGVVQMFVWLLYDKPWTLPAGGAVVGYITNWLAIKLIFEPVDPVKLGPFVLQGLFLKRQDEVAADFAEFFSSNVLTSNKLWSSIIDGSRADAFRELVAARVVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEDEFTLIIAGAILGAIAGFLQMLLSTKGVRDAAKNAASLAAEKAAATADGVVDVG 679          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: D8LT84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT84_ECTSI)

HSP 1 Score: 694 bits (1791), Expect = 2.910e-243
Identity = 337/411 (82.00%), Postives = 380/411 (92.46%), Query Frame = 1
Query:  679 RWRYALTKIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKSV 1911
            RWRYAL KIKKEPLQILTIP+SAACVGW+TNKLAVEMIFHPLVWRG+PLRV+EGQPLGL+GWQGIVPAKAGVMAERMVDMVTTQL+DV++VF RLSP +VARLLGPEI++I Q + +DL P  +AW+PG F +GL PQ VDELKGLR +ML G+TKDMQ+ +T VLDLK+MVVGEML+DRSLMV+LFQRCGKAEFKFLVNSGFFFGFLLG++QMFVWLLYDKPWTLPAGGA+VGYITNW+A+KLIFEPVDP+K+GPFVLQGLFLKRQ EVAADFAEFFS NVLTS KLW++++DGSRA AF+ELV+ RVVPFVSRASAVAGANLDP+  + LA RA  KL DHVHVLH+YTD+TLA+RETMTV MQKMSTRTFEGVLHPVFQEEEFTLI+AGA+LGAIAGFLQMLLSTK V
Sbjct:    2 RWRYALAKIKKEPLQILTIPVSAACVGWLTNKLAVEMIFHPLVWRGIPLRVVEGQPLGLLGWQGIVPAKAGVMAERMVDMVTTQLVDVDEVFRRLSPGKVARLLGPEIDSIVQSVYEDLAPGPLAWVPGSFGSGLVPQAVDELKGLRRNMLVGITKDMQKQVTHVLDLKKMVVGEMLRDRSLMVSLFQRCGKAEFKFLVNSGFFFGFLLGVVQMFVWLLYDKPWTLPAGGAVVGYITNWLAIKLIFEPVDPVKLGPFVLQGLFLKRQEEVAADFAEFFSSNVLTSNKLWSSIIDGSRADAFRELVAARVVPFVSRASAVAGANLDPLAVKGLALRAVGKLGDHVHVLHDYTDKTLALRETMTVQMQKMSTRTFEGVLHPVFQEEEFTLIIAGAILGAIAGFLQMLLSTKGV 412          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A835Z427_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z427_9STRA)

HSP 1 Score: 424 bits (1090), Expect = 1.910e-139
Identity = 218/398 (54.77%), Postives = 285/398 (71.61%), Query Frame = 1
Query:  718 LQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVG----EMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLS 1899
            +Q L+IP++AA VGW TNKLAV+MIF+PL WRG+PL VIEGQP GLIGWQGIVPAKA VMA RM DMVTTQL++V++VF RL P  +A LL PEI  + + +        + +     +A L    V  L  LR   L  L KD+Q+++ + +   E  V     +  + R+++V LF++CGK EF FLVNSG +FGFLLGLLQM +WLL D+ WT+P GG IVG ITN +A+KLIFEPVDP+  GPF LQGLFL+RQ EV+A+FAE+F+ NV+ S+ +W  ML GSRA  F +L+S+ V PF+ +AS + G  +D  +A+ LA +   +L+DHVHVL +YTD+TL ++ETM + M+ MS+RTFEGVLHPVFQE+EFTLIVAG  LG  AG +QM  S
Sbjct:    1 MQTLSIPLTAAFVGWFTNKLAVDMIFYPLQWRGIPLHVIEGQPFGLIGWQGIVPAKAAVMAARMTDMVTTQLVNVQEVFMRLKPQEIAALLAPEIGPMAKDVAGKPCASHLCFT-APHSAVLAADQVGRLIELRQRFLVRLVKDLQKNVDRRVPRLEYSVHFAYVQHCETRTILVDLFKKCGKKEFPFLVNSGLWFGFLLGLLQMALWLLCDRAWTIPVGGFIVGIITNAIAIKLIFEPVDPVFFGPFKLQGLFLQRQAEVSAEFAEYFTTNVVHSRNIWRVMLLGSRAPFFFKLLSKHVTPFIKQASCIVGTPVDDDLAKGLAHKVGMRLKDHVHVLDDYTDKTLRLQETMDLKMKMMSSRTFEGVLHPVFQEDEFTLIVAGGALGLAAGLIQMYFS 397          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A7S2RKC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKC1_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 1.020e-131
Identity = 206/410 (50.24%), Postives = 281/410 (68.54%), Query Frame = 1
Query:  685 RYALTKIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKI--GPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKS 1908
            R A  + + +PL  L IP  AA VGW+TNKLAVEMIF+PL W G+PLR     P GL GWQGIVPAKA VMA R+VDMVTT+LI+V++VF RL PT V RL+ PE+  + QGI  + LP  +A L     AG+  +++ +L+ + + ML GLT+DMQ+ +  +LD++ +VV E+ +++ ++V LFQR G+ E +FLVNSG +FGFLLGL+QM  WL     WTLP GG IVG  TNW+ALK IFEPV PM +  G  VLQGLFLKRQ EV+ +FA++ S +VLTS+KLW A+L+G ++  F  L+  R+   V  A +V G +   I    +      +L  H+ VLH YTD+TL +++ M   M  ++T+ FEG+LHP+FQE+E TLI+AG VLG IAG +Q+ LS ++
Sbjct:   15 RLAARRFRDDPLGHLAIPFVAALVGWVTNKLAVEMIFYPLEWTGIPLRRFPENPFGLFGWQGIVPAKARVMAGRIVDMVTTKLINVKEVFGRLEPTVVGRLMAPEVELMAQGIAAEALPGPVAKLARDVVAGMPSESLQQLRQIEHHMLEGLTRDMQKQLPNILDIRHLVVEELSREKHVLVNLFQRVGREELRFLVNSGSYFGFLLGLVQMVAWLFCRAWWTLPLGGTIVGLATNWIALKFIFEPVQPMSLFGGRMVLQGLFLKRQPEVSKEFADYMSEHVLTSEKLWHAILEGPKSATFHSLLDVRLRRAVRAACSVLGLDSTVIPFEGICNAVRRRLPSHIGVLHAYTDRTLGLQKLMREKMLLLNTKEFEGLLHPIFQEDELTLIIAGGVLGCIAGVVQVWLSGRN 424          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A7S2RKK4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKK4_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 5.510e-130
Identity = 206/410 (50.24%), Postives = 281/410 (68.54%), Query Frame = 1
Query:  685 RYALTKIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKI--GPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKS 1908
            R A  + + +PL  L IP  AA VGW+TNKLAVEMIF+PL W G+PLR     P GL GWQGIVPAKA VMA R+VDMVTT+LI+V++VF RL PT V RL+ PE+  + QGI  + LP  +A L     AG+  +++ +L+ + + ML GLT+DMQ+ +  +LD++ +VV E+ +++ ++V LFQR G+ E +FLVNSG +FGFLLGL+QM  WL     WTLP GG IVG  TNW+ALK IFEPV PM +  G  VLQGLFLKRQ EV+ +FA++ S +VLTS+KLW A+L+G ++  F  L+  R+   V  A +V G +   I    +      +L  H+ VLH YTD+TL +++ M   M  ++T+ FEG+LHP+FQE+E TLI+AG VLG IAG +Q+ LS ++
Sbjct:  139 RLAARRFRDDPLGHLAIPFVAALVGWVTNKLAVEMIFYPLEWTGIPLRRFPENPFGLFGWQGIVPAKARVMAGRIVDMVTTKLINVKEVFGRLEPTVVGRLMAPEVELMAQGIAAEALPGPVAKLARDVVAGMPSESLQQLRQIEHHMLEGLTRDMQKQLPNILDIRHLVVEELSREKHVLVNLFQRVGREELRFLVNSGSYFGFLLGLVQMVAWLFCRAWWTLPLGGTIVGLATNWIALKFIFEPVQPMSLFGGRMVLQGLFLKRQPEVSKEFADYMSEHVLTSEKLWHAILEGPKSATFHSLLDVRLRRAVRAACSVLGLDSTVIPFEGICNAVRRRLPSHIGVLHAYTDRTLGLQKLMREKMLLLNTKEFEGLLHPIFQEDELTLIIAGGVLGCIAGVVQVWLSGRN 548          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A7S1ZVN4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVN4_TRICV)

HSP 1 Score: 388 bits (996), Expect = 8.290e-125
Identity = 212/433 (48.96%), Postives = 284/433 (65.59%), Query Frame = 1
Query:  628 NGDVKDANASTESWMKKRWRYALTKIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQA-FQELVSRRVVPFVSRASAVAGA-NLDPIMARSL---AARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKSV 1911
            N DV  +  +    + + +R A  K +  P   L IP  AA VGW TN LAV+MIF+P+ +RGL +      PLGL+GWQGIVP K   M+E MVDMVTTQL+DV +VF RL P RVA LL PE+  I + + +D+ P+ +A LPG   AGL   T+  +  +    LRG T+ MQ++I  VL+L+  VV +M+ DRS +  LF++CG+ E  FL NSG +FGFLLGL+QM V L +D PW+L  GG +VG  TNW+ALK IFEPV+P + GPFVLQG+FLKRQ EVAA+F++FF+ NVLTS++LW ++L   R    FQ L       F + A  +AG  ++ P ++  L     RA DKL  HV VLHEY D TL +RET+ ++M++MS+  FE VLHP+F+E+E TLI+AG VLG  AG +Q  L T  +
Sbjct:   18 NDDVPSSPRTLVRKISEAFRNAGRKFRSRPGTYLLIPFIAAFVGWFTNWLAVQMIFYPVRYRGLDIYRRPEVPLGLLGWQGIVPCKTRKMSETMVDMVTTQLLDVGEVFRRLDPRRVADLLAPEVPKIAEEVLEDVFPKWIADLPGAAMAGLPTDTLTFMGDMNKKFLRGFTRAMQENIDSVLNLRNCVVDQMMTDRSKLGTLFRKCGQKELDFLTNSGLWFGFLLGLIQMAVALFWDNPWSLSFGGLVVGLATNWLALKWIFEPVNPTRFGPFVLQGMFLKRQKEVAAEFSKFFAENVLTSERLWNSILTDPRTTPKFQGLFREH---FTNFAMGIAGTLSVGPAVSDMLDMATTRAMDKLPAHVGVLHEYVDNTLGLRETLRISMERMSSVQFERVLHPIFEEDELTLILAGGVLGFAAGLVQQGLETGKI 447          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A7S3SN01_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SN01_9SPIT)

HSP 1 Score: 383 bits (984), Expect = 4.400e-122
Identity = 190/405 (46.91%), Postives = 272/405 (67.16%), Query Frame = 1
Query:  721 QILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKMAWLPGGFAAG------LQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPI----------MARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQ 1887
            Q  TIPI A  VGW+TNK+AV+MIF+P+ + GL LR    QPLG +GWQGIVPAKA  MA+R+ D+VTT+L+DV +VF RLSPT+VA LL P +N I + +  ++ P  M    G   AG      L   +  EL  LR   + GLT DMQ+H+ +V+D + +VVG M++++ +++ LFQRCGKAE  FLVNSGF FGF+LGL QM +W+ Y++ WTL  GGAIVG++TNW+ALKLIFEP++P + GPFVLQG+FL+RQ+EV+A+FA+  +  +L+S+ LW  +L+GS +  F EL+  R    +  A+AV     DP           M      +  ++L + + ++H Y D+TL +R T+   ++K+S + FE +LHP+FQE+E TLI+ G++LG   G+ Q
Sbjct:   56 QYCTIPIFAGAVGWLTNKIAVDMIFYPVEFGGLRLRTYPNQPLGWVGWQGIVPAKAAEMAQRITDLVTTKLLDVGEVFKRLSPTKVADLLAPGVNRIAEDVVAEMSPAGMG--TGAVVAGKAVLRGLDEASQAELLALRQRFVAGLTSDMQRHVREVVDFESIVVGGMVREKQMLIDLFQRCGKAELAFLVNSGFSFGFILGLGQMLLWMFYERAWTLAVGGAIVGFLTNWIALKLIFEPIEPTRFGPFVLQGMFLRRQHEVSAEFADAMTEKLLSSESLWKGILEGSGSVKFAELLRMRTSEMMRGAAAVLYGGSDPTSFGGARHWKEMEDQATTKILERLPNELPLIHSYIDETLDLRRTLRTNLRKLSPKEFESLLHPIFQEDELTLIIVGSLLGLAVGYAQ 458          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A7S3PV98_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV98_9STRA)

HSP 1 Score: 376 bits (966), Expect = 3.460e-119
Identity = 194/423 (45.86%), Postives = 280/423 (66.19%), Query Frame = 1
Query:  649 NASTESWMKKRWRYALTKIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEK-MAWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQA-FQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKSV 1911
            ++  + +++K  R A+ K K  P   L IP  AA VGW+TN LAV+MIF+P+ +RG+PL  +   PL LIGWQGIVP K   M+E MV+MVTTQL+ V+ VF RL P +VA LL PE+  + + I  D+ P   MA LP     GL  +T D +  + ++ L+     MQ +I  +L+++  VV +ML DRS++  LF +CG+ E  FL NSG +FGFLLGL+QM + L +D PW+L  GG +VG  TNW+ALK IFEPV+P KIGPF+LQG FL+RQ EVAA+F++FF+ N+LTS+K+++++L+    Q  F  L +  ++ F    S+     ++P + +  AARA  KL +H+ V+H Y D  L ++ET+ ++M+KMS+  FE VLHP+F+E+E TLI+AGA LG  AG +Q  + T  +
Sbjct:   72 DSKRQRYLQKPIRKAVEKFKARPGTYLLIPCVAAGVGWLTNWLAVQMIFYPIKFRGIPLYRVREVPLALIGWQGIVPCKTRAMSETMVEMVTTQLLCVKDVFRRLDPKQVANLLAPEVPKLGESIIADVAPTPWMATLPKSVLLGLSQETRDLMGHMNHNFLKDFIIAMQDNIDSLLNVRNCVVNQMLLDRSMLGKLFMKCGQKELDFLTNSGLWFGFLLGLIQMVIALFWDNPWSLSIGGGVVGMATNWLALKWIFEPVNPTKIGPFILQGQFLRRQKEVAAEFSQFFANNILTSEKMFSSILNDPATQPLFNNLFTEHLIKFGGAISSGLKVMVEPEVIKMAAARAVQKLPNHIGVVHNYVDSKLQLQETLRISMEKMSSAQFERVLHPIFEEDELTLILAGAALGFAAGLVQQGIETGKI 494          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A6U4F0D7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F0D7_9STRA)

HSP 1 Score: 375 bits (964), Expect = 3.730e-119
Identity = 200/440 (45.45%), Postives = 282/440 (64.09%), Query Frame = 1
Query:  619 QGNNGDVKDANASTESWMKKRWRYALT---KIKKEPLQILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLP-----EKMAW-LPGGFAAGLQPQTVDELKGL-RNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKS 1908
            +GN  +++ A  + +    K+  YA T   + K +  +  TIP+ AA VGW TN LAV+MIF+P+ +RG+PLRVI+ QPLGLIGW+GIVPAKA  M+  MVDMVT  LIDV++VF +L P   ARLL PE++ I   +  ++L        M W L      G  P     ++ +     + G+ + MQ  I  VLD++E VV  ML DR+L+V LFQ CG+ E +FL +SG + GF LG++QMF WL+Y + WTL  GG IVGY+TNW+ALK IFEPV+P+KIGP  LQG+FL+RQ EV+A+F++FF+  VLTS+KLW ++  G ++ AF+ LV  RV   +++     G      + + +A     +L   VHVLH+Y D  L ++  M  AM +M    FE VLHP+F+E+E TLI+AGA LG  AGF+Q +++ +S
Sbjct:   43 EGNQAELEAAGVTPDEGKGKKESYARTLWLRFKADWREYCTIPVVAAFVGWFTNWLAVKMIFYPINFRGIPLRVIDDQPLGLIGWRGIVPAKAAKMSGAMVDMVTKNLIDVDQVFRQLDPRTCARLLAPEVDRIVPEVAAEVLGAGGAVRSMLWELISMLTLGAAPLAAPLVRRMVEGGFVAGVVRSMQSSIQGVLDIRESVVTTMLGDRNLLVKLFQTCGRNELRFLTDSGLWVGFSLGIVQMFAWLIYRRYWTLTLGGTIVGYLTNWIALKWIFEPVNPVKIGPITLQGMFLRRQKEVSAEFSDFFATRVLTSEKLWHSIFTGPKSDAFRGLVEGRVGDLLAKTGV--GLAASGAVVKQIADGVVTRLPGSVHVLHDYVDGALDLKAKMGAAMTRMKPEQFERVLHPIFEEDELTLILAGAALGGAAGFIQQVMAQRS 480          
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Match: A0A7S4B4S3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B4S3_CHRCT)

HSP 1 Score: 379 bits (972), Expect = 3.940e-119
Identity = 190/411 (46.23%), Postives = 276/411 (67.15%), Query Frame = 1
Query:  721 QILTIPISAACVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMAERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPE---KMAWLPGGFAA--GLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVGEMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPWTLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADFAEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANLDPIMARSLAARAADKLRDHVHVL----------HEYTDQTLAIRETMTVAMQKMSTRTFEGVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKS 1908
            Q  TIP+ A  VGW+TNK+AV+MIF+P+ + GLPL+    QPLG IGWQGIVPAKAG MA R+ ++VT++L+DV +VF RLSP +++ LL P +N I + +  +++P+   +   +  G A   GL  +  + L  LR+  +R L +DMQ H+ +VLD+KE+VVG M+ ++ L++ LF+RCG+ E  FLVNSGF FG LLG+ QM  W+ Y++ WTL  GGA+VGY+TNW+ALKLIFEPV PM++GPF +QG+FLKRQ+EV+A+FA+  +  +L+S+ LW  +L GS +  FQ+++ +    F++ A+++      P  A   A  AA +LR    V+          H+Y D+TL +R T+   ++ +S   FEGVLHPVFQE+E TLI+ G+VLG   G+ Q     KS
Sbjct:  186 QYCTIPLFAGAVGWLTNKVAVDMIFYPVEFAGLPLKRYPEQPLGWIGWQGIVPAKAGTMATRLTELVTSKLVDVREVFCRLSPDKLSSLLAPGVNRIVETVVGEMVPQGPARRGAVGAGTAVLRGLSSEQQEALVALRHRFVRDLARDMQDHVDEVLDVKELVVGGMVAEKQLLINLFKRCGEKELAFLVNSGFGFGLLLGVFQMAAWIFYERAWTLAVGGAVVGYLTNWIALKLIFEPVQPMQLGPFQIQGMFLKRQHEVSAEFADCMTEKLLSSESLWNNILHGSGSARFQQMLHKHTAEFMTGAASIVHGVSPPTGAAEQAWWAALQLRASSRVMELLPQELPLVHDYVDETLQLRSTLKENLRSLSPEEFEGVLHPVFQEDELTLILVGSVLGLAVGYAQAFWDAKS 596          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52.12550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF94_9PHAE1.030e-24767.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT84_ECTSI2.910e-24382.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z427_9STRA1.910e-13954.77Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2RKC1_9STRA1.020e-13150.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RKK4_9STRA5.510e-13050.24Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S1ZVN4_TRICV8.290e-12548.96Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3SN01_9SPIT4.400e-12246.91Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S3PV98_9STRA3.460e-11945.86Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U4F0D7_9STRA3.730e-11945.45Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4B4S3_CHRCT3.940e-11946.23Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52contigH-paniculata_contig52:47944..57355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score693.0
Seed ortholog evalue1.5e-196
Seed eggNOG ortholog2880.D8LT84
Hectar predicted targeting categoryother localisation
EggNOG OGs29ENS@1,2RMTT@2759
Ec32 ortholog descriptionProtein of unknown function DUF445
Ec32 orthologEc-12_005620.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size2080
Cds size2079
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52.12550.1prot_H-paniculata_contig52.12550.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52 47944..57355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930515.5763845-CDS-H-paniculata_contig52:47943..482281622930515.5763845-CDS-H-paniculata_contig52:47943..48228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 47944..48228 +
1691481327.0495565-CDS-H-paniculata_contig52:47943..482281691481327.0495565-CDS-H-paniculata_contig52:47943..48228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 47944..48228 +
1622930515.5932007-CDS-H-paniculata_contig52:50541..509361622930515.5932007-CDS-H-paniculata_contig52:50541..50936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 50542..50936 +
1691481327.0647924-CDS-H-paniculata_contig52:50541..509361691481327.0647924-CDS-H-paniculata_contig52:50541..50936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 50542..50936 +
1622930515.6096783-CDS-H-paniculata_contig52:51729..518231622930515.6096783-CDS-H-paniculata_contig52:51729..51823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 51730..51823 +
1691481327.083249-CDS-H-paniculata_contig52:51729..518231691481327.083249-CDS-H-paniculata_contig52:51729..51823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 51730..51823 +
1622930515.628221-CDS-H-paniculata_contig52:52434..526081622930515.628221-CDS-H-paniculata_contig52:52434..52608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 52435..52608 +
1691481327.0979724-CDS-H-paniculata_contig52:52434..526081691481327.0979724-CDS-H-paniculata_contig52:52434..52608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 52435..52608 +
1622930515.6420193-CDS-H-paniculata_contig52:53230..533771622930515.6420193-CDS-H-paniculata_contig52:53230..53377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 53231..53377 +
1691481327.1076827-CDS-H-paniculata_contig52:53230..533771691481327.1076827-CDS-H-paniculata_contig52:53230..53377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 53231..53377 +
1622930515.6578345-CDS-H-paniculata_contig52:53898..539731622930515.6578345-CDS-H-paniculata_contig52:53898..53973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 53899..53973 +
1691481327.1176233-CDS-H-paniculata_contig52:53898..539731691481327.1176233-CDS-H-paniculata_contig52:53898..53973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 53899..53973 +
1622930515.6821015-CDS-H-paniculata_contig52:54251..543611622930515.6821015-CDS-H-paniculata_contig52:54251..54361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 54252..54361 +
1691481327.131704-CDS-H-paniculata_contig52:54251..543611691481327.131704-CDS-H-paniculata_contig52:54251..54361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 54252..54361 +
1622930515.7013881-CDS-H-paniculata_contig52:54883..550881622930515.7013881-CDS-H-paniculata_contig52:54883..55088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 54884..55088 +
1691481327.1450346-CDS-H-paniculata_contig52:54883..550881691481327.1450346-CDS-H-paniculata_contig52:54883..55088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 54884..55088 +
1622930515.719999-CDS-H-paniculata_contig52:55357..556511622930515.719999-CDS-H-paniculata_contig52:55357..55651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 55358..55651 +
1691481327.1553583-CDS-H-paniculata_contig52:55357..556511691481327.1553583-CDS-H-paniculata_contig52:55357..55651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 55358..55651 +
1622930515.73186-CDS-H-paniculata_contig52:57055..573551622930515.73186-CDS-H-paniculata_contig52:57055..57355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 57056..57355 +
1691481327.1681142-CDS-H-paniculata_contig52:57055..573551691481327.1681142-CDS-H-paniculata_contig52:57055..57355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52 57056..57355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52.12550.1

>prot_H-paniculata_contig52.12550.1 ID=prot_H-paniculata_contig52.12550.1|Name=mRNA_H-paniculata_contig52.12550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=693bp
KNIVVPSWVLVIRQHYFRLSAIFQVLTVLQLPRWLKRAPTMRCAHACRVF
LLLTALVSEEGSLTVASSPQGFICVPKSAVHISPASAVRCPSVLKAYPRF
LHPEKVFPESLERRFDSYRRPCRGIAGPASWSSRSQRAWPLAETLGGVEG
GVEGQGWSSRRMFAESVAERKTRRRLCGRFGTTRAVGSDTSDTWDEIVDG
VMEANGQGNNGDVKDANASTESWMKKRWRYALTKIKKEPLQILTIPISAA
CVGWITNKLAVEMIFHPLVWRGLPLRVIEGQPLGLIGWQGIVPAKAGVMA
ERMVDMVTTQLIDVEKVFSRLSPTRVARLLGPEINTITQGICDDLLPEKM
AWLPGGFAAGLQPQTVDELKGLRNSMLRGLTKDMQQHITKVLDLKEMVVG
EMLQDRSLMVALFQRCGKAEFKFLVNSGFFFGFLLGLLQMFVWLLYDKPW
TLPAGGAIVGYITNWVALKLIFEPVDPMKIGPFVLQGLFLKRQNEVAADF
AEFFSRNVLTSKKLWAAMLDGSRAQAFQELVSRRVVPFVSRASAVAGANL
DPIMARSLAARAADKLRDHVHVLHEYTDQTLAIRETMTVAMQKMSTRTFE
GVLHPVFQEEEFTLIVAGAVLGAIAGFLQMLLSTKSVRQAAKNAAAVAAA
KAASAADGVVEAGEELVGGVAGHKAKATVTGWRERAGCTARW*
back to top

mRNA from alignment at H-paniculata_contig52:47944..57355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52.12550.1 ID=mRNA_H-paniculata_contig52.12550.1|Name=mRNA_H-paniculata_contig52.12550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9412bp|location=Sequence derived from alignment at H-paniculata_contig52:47944..57355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACATTGTTGTGCCATCGTGGGTACTCGTCATTCGGCAACACTATTT CCGACTGAGTGCCATATTTCAAGTACTCACTGTCCTGCAGTTGCCGAGGT GGCTGAAGCGGGCACCCACTATGAGGTGTGCTCATGCGTGTCGTGTGTTT CTTCTCCTGACGGCACTGGTATCAGAAGAAGGTTCCCTGACCGTAGCATC ATCACCGCAAGGCTTCATTTGTGTGCCAAAGAGCGCTGTTCATATTAGCC CAGCGTCGGCTGTTCGTTGTCCATCTGTTCTGAAGGCGAGTGACTCCCTA CAGTGCTAGGAATTTGCGAGAGGAACGGGCTCTTAGCGTAGGATTCCAGA GTAGGACCTGTTGCCCAACACCAACATCAGGCGTTGGGATCTTATTGTAA CTCTCGTGCTCGTGACACGACCTATAGTGAAGTGTGGGGTGTCTCAAGGC ATGTTTACGGTTATTGTAATTTCCAGAGTATAACACTCTCCCTCGAGAAC ATTTTGGACGCTATCACGGAGGGTGTGGTATTCGGAGAGCGGCGAGGGGA AGGGGGTGGTATACTCCGTATCTCATATCTCAGGGTAGCATGCTTGCGGC CATTGTGGGTGATATTGCTCGTTAGTGATAAGCAGGGGGCGGGAGGGGGA AGATGGCATGACGGGTACGGTGTTCGTATATGTGACGCATCTGACGCAAG CAGCAGCGGGGTGATACATTACGGTATCGCCGCGGTCGTAGCATAGTTTG CGCAACGTTCGCCATTTGCCCATAACCCCCTCGTGATGCGAAGGGCGTGT GATAGCGACGCTGTCCCTAGAGATGAATTCATTATGCCTGTGTCGCATGC CTGGGTTATTTTTGGTAACAGCACCGCACGTGAGGGAGGTAATATCAAAG ATAAGATAATGTATTTCATTATGTCGTTGTGACTCACAAGTTTTGCATGT TTATTAGTACGTTCGCCCTGTTTCTCAGGCCCGTTGTCGCAGGGTGCAAG ACAACTAGAGTAAGACAGCCGAAAGCGAAGAAGACCAAACAAATCAAACG AAGCCACACGAACCAATGCAAAGCAAAAATGCAAACCTAAAAAATATGAA CAAGTACATTGAAAGTTAACATTTTAAGGTTTCACCGGGGGTGATGATCT TCGATACCCGTGGTGATAGTGCCCAAACTCCCAAAATTTGGTGTCACCTG GGTGGTATTCAGGAAGGAATGTTATTACACTATGTAAACGTCGGCGTCTG GTACTGGTCCCTGTCGAAACCCTGAAGAATACATGCTCGGAAAACAGGAA ATAAAAATTTGCATTTTTTGTTCTGACAAATGCCCACGACAGGATTACGG GGATAGTGCTGTAATTGCAGACAAAGAGACGGGAGGGATTTGCATGGTTT TGCGTTCCACCACAACAGCATTTGATCGAGACGCTAACCACAAATCACGG TATGAGTGACTGATTGTACAGGGTGTGTGTGCTAAACAAAGCCGCACGCC GGGACACGATCCATAGGACAATATGATTCTGATGGAGTTATTCCGACTCT CGCAGACAGTGGAAACAGCAAAATACAAAAATTGTAGTTGCCCAGCTGCA TCTGTATCGTTTTTTCAAAGCATTGGCCACAGCCACGGTGACAGGGTACT CAGGCATTGCATTCTCTACCATGCCTCGGTTCCCGGGTGTCACCACCCTG GGTCGGTTACGCTCACGAAACACAGCCAGCCCAAGAGGACGTTGCCCAAG AAAACACAGCAACCCAAATATGAAACGACCAAGCCTGCACAATTAATCGA CCCGACTAAAGCGCCGGAGGATTCCTCTCGGGATTTCATAACCTCAATAC AAGTTAACTTGTGTATAGTAAACAACACATTTTTGACTGACCGTTGGGTA AACCAACGTGCATGGCTTTTTTGTTCCGAAAAAGCGTCCGGCGCCAGAAG GCTTGAATATGGGGGGAAAGGTCTGCAAACTGTATCCGCCACGACACATT CCGAAAACTATATTATGCATCTTCAAATTGAATCTTATCTCAAGAAGTTC ATCTTAGCATTCTGTACCATAGGACGGTAAATTATACAGTGTAAAGCTCG AGGGGGAAAAGCTTGATGGATTCTTGTGCTTCTTGGTGAGATCAGCCTCT ACAAGTTAGAGGTGACCAGGTGCCGTACTCCGCAATACTTGCAACGGTGT CGCACAAACACATCTCTCTAGAGCATACATGGAATTCTACTAACGCACTG GTTCACTTGGTACGGCGTCTCTGTCTGTAACATGGTGTCCATTGCAATTG GAACAGTTGCCGGTAATGTGCTCCGTGCCCGACACGCAACAGACTAAATC TGAAGCACAAGTAAACGTTTACATCGAATAGATGTCTTGCGAGACGCTCC TCTTCCGATACCTCCCCTAGCGCAGGCGTAAGTAAAACATTTTCGAGCTA AATTTGGCAACGTAAGAAAGAGCGATTGGCCGTTGGAAATCGCTCTGATG GGAACAATGCCCCGTCATCCCGAGAACGTGTGGTCATTGGTCCAATAACT ATGGCATGCAAAACATGAGTACGCCCCTCCCCCTCCCCCCTAGCGCAGGC GTACCCGCGCTTCCTTCACCCAGAGAAGGTGTTCCCTGAATCGCTAGAAC GACGATTCGATAGCTATCGCAGACCTTGCCGCGGCATCGCAGGGCCGGCG TCGTGGAGCTCGAGGAGTCAGAGGGCATGGCCATTAGCGGAGACATTAGG GGGGGTGGAAGGGGGCGTTGAGGGGCAAGGCTGGTCATCCAGAAGAATGT TTGCAGAGAGCGTGGCAGAACGAAAAACACGAAGGCGACTATGTGGTAGA TTTGGGACGACGAGGGCGGTAGGGAGTGATACTTCAGACACTTGGGATGA AATTGTTGATGGCGTCATGGAGGCTAACGGGCAGGGTAATAATGGGGATG TGAAAGATGCGAACGCCAGTACTGAGAGCTGGATGAAGAAGAGGTGAGCG AAGGGCGCGGATAAACTTTTCAAGCCCTTATGGTTGTTTATTTGTCTGTC TGTTTCTGTGTTTTCATTTTTTCGAGAAAGCACCACAGTACGCTAGATGG AGATGGGGTGATAACGACAGACAGCATCGACAGAAAGCATTGACTGGGAT AGACTCACGTGCGTTTTGCGCTTCTGTAGAGTGCCTCTTCTACATAGTAT TCTCGGGTCTAGGGCTGGACGACCTGCCAGCGTGACGACCTCAGGCCAGA AAATATATTGCTGTGTACACTGCATTAACCTGAATAGGGTAAAGTACGGC AGAAGACAGCGGAGCTCCTGATGCCTTCTGACCGAATTTAAGCTGAAGCA GAAAACGGAGTTTTTCCAGGAGGCACCGCTCGTGAAAGGCATTCGCCCCC CGACGAATATAAACACTAGGAATGATTTAGATGAAAAAAAAAGCATTCAC CTGAGGCTTCAGTATGAGCACCTCTATTTTATGTGTCCTAGACCATCTAC GACTGCGGCGAATGCCTAGTAAATGAATAAACAGGGGATCAACACTTTAG GTTTTGTGTGCCCGCACATGCTGAAATTCACGTGAGTACTCTTCAAAATT CCTTCTAAATCATTCGAAGCATTCATATTCGTCTAAGGGGTGAAAGTATC CGACTACAGACCTTTCTCGTAGTTGGCGGAAGTTGTGAGAGGAGGACCGT TTTTTTTTTCTCGCCAGTGTATTCTGTTCTTTGTGTTGCTTCTTTTTTTC CACACTGTTGACTGTGATATCCTGCGCTCTCCCCAGATGGCGTTACGCGT TGACGAAGATCAAGAAGGAGCCACTTCAGATTCTCACGATCCCTATCTCG GCTGCTTGCGTCGGCTGGATCACGAACAAGGTGTGCGCGGCTAAACCCAG ACAGCTCCCGGCCCGGGTCCTACAGTGCCGCCGAGCCGTTGACCGTTGAA GAAAGAATACATGAGGCGTTGTTCCGGATATTAGGGCGGGGTCGGAAATA TACCCGACGTGACGTCTTGAACGTTTCAGCAAGCCCGGTGTCGGAGAGGC AAGATCGTTTGTTTGTCTGTGTCGAGTTGAGTCGGTGCGTGGAAACATGG CAGTACCCCTACACGATTGAGTCGGTGCAAGGAGCGACAATGAGGTGTTG CTTGGAAACCGTGGGTATTGGAGTTGGAGTTGGCGTAGGGGTGGGGCCGC AGCTGCCACTGGTGTATGTTCCGACAGTGATAAGTCCGATACCTCACGAT AGTTGTCGTTCTCTCTCTTACTCTCTCTCGGCAAGATCGGTTCGGAAGGA ACTGTTGGAGATATTTACGACAACGGAAGGGTGGTGTTTTTTGCTGATGT GTTTTACTTTAGATCTGGTTGTTCCTGCGATTGCAAGCACTGGTAACAAC GTTTTGGTCAATATTCGATGGTACAACAAATCATGTTTGCCGAGGTAGCC TTATAAACAGGACGTCGATCGTGTATTTTTTCATGTTACAGCTGGCAGTG GAAATGATATTTCACCCACTGGTCTGGCGCGGGCTTCCGCTGAGGGTGAT TGAAGGGCAGCCATTGGGGCTGATCGGCTGGCAGGGGATTGTGCCGGCGA AGGCTGGCGTGATGGCAGAGCGAATGGTGGACATGGTCACGACACAACTT ATCGACGTAGAGAAGGTTCGTTGCTTCGATTGGGTATATGGCATGGGCGC AGAGTCTCGATTTTACATGAACACACGAGGTGGTTCCCAGCGTGTCAGTA CATGGGTTGCAGCGTCGACCAACATGGTCAGATATTCTCCCCGTAATTTC GAGACGCGGTAAGCCTGAATTAGCCCTCTGATATCGGGCCCGTCAAAAGT TCTTCGGTCGTCGATAAGTACGTGTATTCTCGGTGTCATGCACGTCAATC GTGCTGCTACGTACGGTGGTGTCAAAACTGAAGAACACAAAAGCTGCTGC GACAGGAAGTACGAATGTTTTTGTTGTAAATCTCTAGATTGTTTTTTGCA GATCTAGTACGCATGGCGGCACAAGCTAACGTGGGACGTTAGTATTGCCT AGTATCCTCGTTTGAAGATATGTCCCCTCCCAGTCTCCTGAGGTTGCACC GCCTGCCCGCCCTGTGTGAAAAGACCCCTGTTCCTCGATCGCTGGGTATG AGCCGTACAGATACCCCGTTATTTCACTGCTAGCCAGTGGATATTTCGAC CACCCCATGCTTCGACAGAGAAGCACACGCGCGGCTTCTATTTTAACGGG ACAAGACTGTACGCGAAACGTGCGTTCGTGCCCGTAGGTATTCAGCCGAC TTTCTCCTACCCGCGTGGCTCGGCTCCTAGGACCGGAGATAAATACAATT ACTCAAGGTATTTGCGACGACCTCCTTCCGGAGAAGATGGCGTGGCTTCC CGGGGGCTTTGCTGCCGGCCTTCAGCCCCAGACGGTGAGAATGGACACGC CGACAGCCCTCTGTTTCTCGCGGAGATGGTAGTCGTCGATATATATCTAC GGTCGGTTATAGTAACAACGGATTGTGAAGGATTCGACGAAATCTCATCC CCTCCCGACCCCAGTGGCGTGGGGGGAAGGTGTACAATGTTCACGGGAAA TGAGACATGGGAGACCAAGGCGTATTGCAGGCTTTAGTCCAGAGCGTGAT GTTAAAGGCCCGCGTCCTCCACCGTCTCGCCACAAGGCGTTGTTATTTTC GTTAAGAGAAATTCGACCTTGTGGTCATTCGAAGTAAGATTTAGCTGGGG TAGACCTATGCAGCAGCAGCAGCAGCAGCCATGTCTTGGATTTTTTATGT AACGACCGATGGCCCAAGTGTCGTTCTCGACGTCGAAGGGTACTGGCGGC ACATCGCACCGTTTCGTCCCGCTTCGCGGATGTTCTGGCCAACGTTGGCA ACACAATCCTCGAAGCTTACGTACTACATGCCCGTGCGATATCTTCACAC GCCAGGTGGATGAGCTCAAAGGGCTGCGGAACAGCATGCTGCGCGGACTG ACGAAGGACATGCAGCAACACATCACGAAGGTGGGTATTTCATGTGATCT GAGTCGCCTCCTACAGATTTCTTATTCTCATCTTGCTCCTGTACAGCAAC CGCGAGATATTGCGCGGGGGGACAACTATGAGCTGTTCTGTGACAGTGCG TGCCTGTCCTCTTTGCTAAGACTGCCCGCGATCGACTGTCATTCTCCTTG ACCTGTGCCGTTTTGTTCGCATCGTACCCAGTCAAAAGTCGCGCCTACAT CGCACTTTCCCCCCAAGACTATGAAAATAACGCGGCACGTTTTTGTTTTG CTCTGAAGGTGCTTGACCTGAAGGAAATGGTCGTAGGTGAGATGCTTCAA GATCGATCGTTGATGGTAGCGCTCTTCCAGCGGTGCGGGAAGGCGGAGTT CAAGTTTCTCGTCAACAGGTGCGGTGTTTTGATGCAAATGGATGAAAAAC AGGAGGCGCAGCGAGCGTTTTCGTTTTTTGTGTTTTGAAAGGACTTTTGG GAGGGCACATGTAACGAGCCTTAGTAGTGTCTCGATTGACTTTCGCTGTA ATTGCTACAGAACGGCGTGGCGTACAGCTGGACCTGTGTAGAGGGGTGAA GGCTGGATGACAACCTACGTGACGAGGTTACGAGCTTTGCAATGCTCATT ACTGTGTGATTATCTCGATGCGACCGCTACGAGGAGGCTAAACCAGCGGG TTTCTTCGCCTTTCAGGCGCTACTCGTAGACCCATTGCACTGTAGCAGCA AGGCGAAGCTTTGTACGCTTCAGTGCTTCCCACAGTTTTCACTCCCCCCA AAAAATAGACAGCTCGTACCCTCTTTCCCCGCTCGCAATCCCTTTCCCAA TCCCTACTTGTGCTTTGTTTCGGGCATCGTGCATTGCGCACAAAAAACAT GGACACGACCGGACATGGGTATCACTTGCCTTCTTTCCAGTGGGTTCTTT TTCGGTTTCTTGCTGGGGCTCCTGCAGATGTTTGTCTGGCTTTTGTACGA CAAGCCGTGGACATTGCCAGCTGGCGGCGCCATCGTCGGATACATCACCA ACTGGGTCGCCCTCAAACTAATCTTCGAGCCGGTAGATCCGATGAAAATA GGGCCGTTCGTCCTTCAGGGACTCTTCCTCAAGAGGCAAAACGAGGTATG GGGAGATGTCACAGATGCCGTACATCCGCAAAAGCCCATTTTGTTGATCA CATATCTCTTGATCGTCGATTGAGATTCAGCAGAGCCCCAGGCAGCGCTG TTCCCCCTCCCGATGCTCCTGTGGTGGTCTTATCATGCCGATCCCCTAGT TGGCCCTCTTCCGCACGCACCATCCCCGACTGTACTGACCCCCCTTTGAT AGTGTAATACCCCTCGGATGGTGTGATACCCCTCTGATTCTTACTTATGT ACGAAAATCAACAGGTGGCTGCTGACTTCGCCGAATTCTTCTCCAGAAAT GTCTTGACGTCGAAAAAGCTGTGGGCGGCGATGCTGGACGGCTCCCGCGC CCAAGCCTTTCAGGAGCTGGTTTCGAGACGGGTCGTTCCGTTCGTGTCTC GGGCGTCGGCTGTCGCAGGGGCGAACTTGGATCCAATTATGGCCCGGAGC CTTGCGGCTAGGGCGGCGGACAAGCTCAGGGATCACGTGCACGTCCTGCA CGAGTACACAGATCAAACACTGGCGATTCGGGAAACAATGACCGTTGCGA TGCAAAAGGTGGGCAATAACTTGTTTTTGAGAGGACCACGGTGCGAAGCA GACGTGGGCCGACCGAGAGAGAAATAAATCGGACAGAGAGAATGCCTGCA TATGAGCTTGCCCTAACGTGCATCACTGCCTTTCTTGATGCTGTTTCCCC TGGTATGTTTCAGAGGGGAAAGTTTTGAATGTATATATGTACAGTATGTA TGTACAGGCTAAGCCCCCTGAGACAGGCGAAAAGGCTTGACGTGGAATGT GCATCTGGTTTTTAGGAGGTTTGCTTTGAATTTTTGAAGAGATGATTGCA TTGTAAGTTCAAAAATTTTGGCTGAGGGTGGCCGCGGCTTTTTGTTAGTT CCGATACAGACATTCTCGAAATGTTCCGGTCCAGAGAGTATTTCGAAAAG AACCCGTTGTAGGCACCATCAGTAAAAATTTGCGTTTCCGATGGGTCCAT CTCCTCAAAATTTGAACTCAATACTCCTAAAATCATATGCAAAAATTCTC GGCAGAGGCCATATTGGGCGCAATCACGCTAAAAGAGCCGAAAAATCAGT AAAATGTGCACGAAATCGGTAAGAAACGAAACGTGAACGCTTCGGCAATA CCGATGCGCTCATCTCGTTGAATATTTGTGTGAAAACTTGGAAAGTTGGG GATGAGAATGGCCTGTTAAAGGTGTAATCAGTACGGAAGCCCAAATTTGA CACATTTTTCTAGAAGTTTTATCCTTTTTTGTTTCTGTCATGACGATTGA ACGGTGGAAAATTGGGAATCGAAACAAGCATCATTGTGCTCGCCATTGTG CCAGCAACAATCGGCCATAAACTTAGTTATCTTGAAAGTGCCGAAACGGC CGATTTGAGCGCGCAGCGCACTCCTGTGTGCTTACACGGGATCAGGGAAG CCCATAATGGTATTTCGGAATGCATTGGTTTGTGCATTTTGACCCGTAGA CTGTTTCGAACCTGTCTTGCCGTGCGTAGGTCGTAATCAAACTTTTGGTT GGCGATTGTTGGCGCAGGAGATGGTATGTAGCCTAGGTTTTTGCTCGCCA TAATGAACAATGCGCCCGGCGGAAGCCATGAAGGGCAAACCCAATGTTGT GCTACCCCCTCCGCCCGCCCCGAGGGTGACCCTTCGTCATATTTTGGTTG TCTTAGCTGCAGCACTTCTCTTTTCGAGCTTCTTCAACCTCGACGTTCCC GTCTTGCAGAAATGCTGTTACGGAATGCAGTACACACCACACGCGTTCAA CCAATGAAAGCGCAAATTCGCAACATCCAACTGCATCCGCTCCACATCTC TCCCCGCTCCCCCCTCCCCAGGTTTGCTCCGCTTGTGGATAAGTGATCCC TCCTTTGCACTCCCCGTGCGCTAAAAAAGCACTGTGCTCGCCGCCCCCCG TAATTTGCTCAGATGTCTACCCGAACGTTCGAGGGCGTGCTGCACCCCGT TTTCCAAGAGGAAGAGTTTACGCTGATAGTTGCCGGAGCCGTACTAGGAG CAATCGCCGGCTTCCTGCAAATGTTGCTGAGCACGAAGAGTGTGAGGCAA GCCGCGAAAAATGCGGCGGCTGTGGCGGCAGCTAAAGCGGCGTCGGCAGC CGATGGGGTGGTGGAGGCGGGCGAGGAGCTTGTCGGGGGCGTTGCCGGAC ACAAGGCAAAGGCGACAGTTACTGGGTGGAGAGAACGAGCGGGGTGTACA GCGCGTTGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig52:47944..57355+

>mRNA_H-paniculata_contig52.12550.1 ID=mRNA_H-paniculata_contig52.12550.1|Name=mRNA_H-paniculata_contig52.12550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4158bp|location=Sequence derived from alignment at H-paniculata_contig52:47944..57355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACATTGTTGTGCCATCGTGGGTACTCGTCATTCGGCAACACTATTT
CCGACTGAGTGCCATATTTCAAGTACTCACTGTCCTGCAGTTGCCGAGGT
GGCTGAAGCGGGCACCCACTATGAGGTGTGCTCATGCGTGTCGTGTGTTT
CTTCTCCTGACGGCACTGGTATCAGAAGAAGGTTCCCTGACCGTAGCATC
ATCACCGCAAGGCTTCATTTGTGTGCCAAAGAGCGCTGTTCATATTAGCC
CAGCGTCGGCTGTTCGTTGTCCATCTGTTCTGAAGAAAAACATTGTTGTG
CCATCGTGGGTACTCGTCATTCGGCAACACTATTTCCGACTGAGTGCCAT
ATTTCAAGTACTCACTGTCCTGCAGTTGCCGAGGTGGCTGAAGCGGGCAC
CCACTATGAGGTGTGCTCATGCGTGTCGTGTGTTTCTTCTCCTGACGGCA
CTGGTATCAGAAGAAGGTTCCCTGACCGTAGCATCATCACCGCAAGGCTT
CATTTGTGTGCCAAAGAGCGCTGTTCATATTAGCCCAGCGTCGGCTGTTC
GTTGTCCATCTGTTCTGAAGGCGTACCCGCGCTTCCTTCACCCAGAGAAG
GTGTTCCCTGAATCGCTAGAACGACGATTCGATAGCTATCGCAGACCTTG
CCGCGGCATCGCAGGGCCGGCGTCGTGGAGCTCGAGGAGTCAGAGGGCAT
GGCCATTAGCGGAGACATTAGGGGGGGTGGAAGGGGGCGTTGAGGGGCAA
GGCTGGTCATCCAGAAGAATGTTTGCAGAGAGCGTGGCAGAACGAAAAAC
ACGAAGGCGACTATGTGGTAGATTTGGGACGACGAGGGCGGTAGGGAGTG
ATACTTCAGACACTTGGGATGAAATTGTTGATGGCGTCATGGAGGCTAAC
GGGCAGGGTAATAATGGGGATGTGAAAGATGCGAACGCCAGTACTGAGAG
CTGGATGAAGAAGAGGCGTACCCGCGCTTCCTTCACCCAGAGAAGGTGTT
CCCTGAATCGCTAGAACGACGATTCGATAGCTATCGCAGACCTTGCCGCG
GCATCGCAGGGCCGGCGTCGTGGAGCTCGAGGAGTCAGAGGGCATGGCCA
TTAGCGGAGACATTAGGGGGGGTGGAAGGGGGCGTTGAGGGGCAAGGCTG
GTCATCCAGAAGAATGTTTGCAGAGAGCGTGGCAGAACGAAAAACACGAA
GGCGACTATGTGGTAGATTTGGGACGACGAGGGCGGTAGGGAGTGATACT
TCAGACACTTGGGATGAAATTGTTGATGGCGTCATGGAGGCTAACGGGCA
GGGTAATAATGGGGATGTGAAAGATGCGAACGCCAGTACTGAGAGCTGGA
TGAAGAAGAGATGGCGTTACGCGTTGACGAAGATCAAGAAGGAGCCACTT
CAGATTCTCACGATCCCTATCTCGGCTGCTTGCGTCGGCTGGATCACGAA
CAAGATGGCGTTACGCGTTGACGAAGATCAAGAAGGAGCCACTTCAGATT
CTCACGATCCCTATCTCGGCTGCTTGCGTCGGCTGGATCACGAACAAGCT
GGCAGTGGAAATGATATTTCACCCACTGGTCTGGCGCGGGCTTCCGCTGA
GGGTGATTGAAGGGCAGCCATTGGGGCTGATCGGCTGGCAGGGGATTGTG
CCGGCGAAGGCTGGCGTGATGGCAGAGCGAATGGTGGACATGGTCACGAC
ACAACTTATCGACGTAGAGAAGCTGGCAGTGGAAATGATATTTCACCCAC
TGGTCTGGCGCGGGCTTCCGCTGAGGGTGATTGAAGGGCAGCCATTGGGG
CTGATCGGCTGGCAGGGGATTGTGCCGGCGAAGGCTGGCGTGATGGCAGA
GCGAATGGTGGACATGGTCACGACACAACTTATCGACGTAGAGAAGGTAT
TCAGCCGACTTTCTCCTACCCGCGTGGCTCGGCTCCTAGGACCGGAGATA
AATACAATTACTCAAGGTATTTGCGACGACCTCCTTCCGGAGAAGATGGC
GTGGCTTCCCGGGGGCTTTGCTGCCGGCCTTCAGCCCCAGACGGTATTCA
GCCGACTTTCTCCTACCCGCGTGGCTCGGCTCCTAGGACCGGAGATAAAT
ACAATTACTCAAGGTATTTGCGACGACCTCCTTCCGGAGAAGATGGCGTG
GCTTCCCGGGGGCTTTGCTGCCGGCCTTCAGCCCCAGACGGTGGATGAGC
TCAAAGGGCTGCGGAACAGCATGCTGCGCGGACTGACGAAGGACATGCAG
CAACACATCACGAAGGTGGATGAGCTCAAAGGGCTGCGGAACAGCATGCT
GCGCGGACTGACGAAGGACATGCAGCAACACATCACGAAGGTGCTTGACC
TGAAGGAAATGGTCGTAGGTGAGATGCTTCAAGATCGATCGTTGATGGTA
GCGCTCTTCCAGCGGTGCGGGAAGGCGGAGTTCAAGTTTCTCGTCAACAG
GTGCTTGACCTGAAGGAAATGGTCGTAGGTGAGATGCTTCAAGATCGATC
GTTGATGGTAGCGCTCTTCCAGCGGTGCGGGAAGGCGGAGTTCAAGTTTC
TCGTCAACAGTGGGTTCTTTTTCGGTTTCTTGCTGGGGCTCCTGCAGATG
TTTGTCTGGCTTTTGTACGACAAGCCGTGGACATTGCCAGCTGGCGGCGC
CATCGTCGGATACATCACCAACTGGGTCGCCCTCAAACTAATCTTCGAGC
CGGTAGATCCGATGAAAATAGGGCCGTTCGTCCTTCAGGGACTCTTCCTC
AAGAGGCAAAACGAGTGGGTTCTTTTTCGGTTTCTTGCTGGGGCTCCTGC
AGATGTTTGTCTGGCTTTTGTACGACAAGCCGTGGACATTGCCAGCTGGC
GGCGCCATCGTCGGATACATCACCAACTGGGTCGCCCTCAAACTAATCTT
CGAGCCGGTAGATCCGATGAAAATAGGGCCGTTCGTCCTTCAGGGACTCT
TCCTCAAGAGGCAAAACGAGGTGGCTGCTGACTTCGCCGAATTCTTCTCC
AGAAATGTCTTGACGTCGAAAAAGCTGTGGGCGGCGATGCTGGACGGCTC
CCGCGCCCAAGCCTTTCAGGAGCTGGTTTCGAGACGGGTCGTTCCGTTCG
TGTCTCGGGCGTCGGCTGTCGCAGGGGCGAACTTGGATCCAATTATGGCC
CGGAGCCTTGCGGCTAGGGCGGCGGACAAGCTCAGGGATCACGTGCACGT
CCTGCACGAGTACACAGATCAAACACTGGCGATTCGGGAAACAATGACCG
TTGCGATGCAAAAGGTGGCTGCTGACTTCGCCGAATTCTTCTCCAGAAAT
GTCTTGACGTCGAAAAAGCTGTGGGCGGCGATGCTGGACGGCTCCCGCGC
CCAAGCCTTTCAGGAGCTGGTTTCGAGACGGGTCGTTCCGTTCGTGTCTC
GGGCGTCGGCTGTCGCAGGGGCGAACTTGGATCCAATTATGGCCCGGAGC
CTTGCGGCTAGGGCGGCGGACAAGCTCAGGGATCACGTGCACGTCCTGCA
CGAGTACACAGATCAAACACTGGCGATTCGGGAAACAATGACCGTTGCGA
TGCAAAAGATGTCTACCCGAACGTTCGAGGGCGTGCTGCACCCCGTTTTC
CAAGAGGAAGAGTTTACGCTGATAGTTGCCGGAGCCGTACTAGGAGCAAT
CGCCGGCTTCCTGCAAATGTTGCTGAGCACGAAGAGTGTGAGGCAAGCCG
CGAAAAATGCGGCGGCTGTGGCGGCAGCTAAAGCGGCGTCGGCAGCCGAT
GGGGTGGTGGAGGCGGGCGAGGAGCTTGTCGGGGGCGTTGCCGGACACAA
GGCAAAGGCGACAGTTACTGGGTGGAGAGAACGAGCGGGGTGTACAGCGC
GTTGGTGAATGTCTACCCGAACGTTCGAGGGCGTGCTGCACCCCGTTTTC
CAAGAGGAAGAGTTTACGCTGATAGTTGCCGGAGCCGTACTAGGAGCAAT
CGCCGGCTTCCTGCAAATGTTGCTGAGCACGAAGAGTGTGAGGCAAGCCG
CGAAAAATGCGGCGGCTGTGGCGGCAGCTAAAGCGGCGTCGGCAGCCGAT
GGGGTGGTGGAGGCGGGCGAGGAGCTTGTCGGGGGCGTTGCCGGACACAA
GGCAAAGGCGACAGTTACTGGGTGGAGAGAACGAGCGGGGTGTACAGCGC
GTTGGTGA
back to top