mRNA_H-paniculata_contig52.12549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: D8LT83_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT83_ECTSI) HSP 1 Score: 429 bits (1104), Expect = 6.820e-147 Identity = 219/301 (72.76%), Postives = 244/301 (81.06%), Query Frame = 3
Query: 15 RNSGMVVKTAIERRYKPKHPFLSGGIAGGLEILATFPLEYVKVQLQLREAVEGGPRFKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVSGWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICR 917
RN A+E RY+PKHPFLSGGIAGGLEI TFP EYVKVQLQL+E +G P+FK P+ C QTLR+ G GLYVGLPPWLTFALPRSAIRFTTFERVS WLQ+G GK++ +NALAAGTVAG IESA CLTPLQNIQIKM Q + RGFV+AL EI RREG+ GFF GLWPTV KGA+NNCIRFGLYNE ALRR+ G++PDEAL A FG+GA AGAVSAVVTHPIDTVKSNLQGLSA YSGSLDC ++I+ASSGV GLFRGL+PR+ RVCLEIGLQFSLYD+ICR
Sbjct: 6 RNGTSNNNRAVEARYQPKHPFLSGGIAGGLEICLTFPFEYVKVQLQLQEKGKGTPQFKGPLHCATQTLRHSGILGLYVGLPPWLTFALPRSAIRFTTFERVSEWLQEGQGKLDAVNALAAGTVAGAIESATCLTPLQNIQIKMMQ---------MDRGFVYALGEILRREGLRNGFFSGLWPTVVKGAVNNCIRFGLYNETAAALRRSCGDSPDEALAAGAVFGIGAAAGAVSAVVTHPIDTVKSNLQGLSAGKYSGSLDCARKIIASSGVSGLFRGLSPRICRVCLEIGLQFSLYDSICR 297
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A7S1TUF2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUF2_9STRA) HSP 1 Score: 247 bits (630), Expect = 3.380e-75 Identity = 137/294 (46.60%), Postives = 180/294 (61.22%), Query Frame = 3
Query: 54 RYKPKHPFLSGGIAGGLEILATFPLEYVKVQLQLREAVEGGPRFK-DPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFER-VSGWLQKG-GGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTD 926
RY+PK PFLSG +AGGLEI TFPLE++K + QLR A R + +D T+R GP GLY GLPPWL FA PRSA+RF+ FE ++G G G + A G ++G +E+A+ +TP+QN+QIK+ DA+ R Y F +L +IPR G+ G F G+ PTV KGA+N+ IRF +Y ++ RA G D S GA AG VSA VTHPIDTVK+ + L SY SL+CF + GV L+ G+TPRVIRVC+E+ LQF+L++ I R D
Sbjct: 17 RYQPKAPFLSGALAGGLEISLTFPLEFIKTEQQLRAAAAADGRSQAGMVDIARATVRRFGPQGLYRGLPPWLFFAFPRSAVRFSVFEHSLAGATALGLGSAADPRLTAACGFLSGAVEAASVMTPMQNVQIKLMHDAHRPAAERRYPRFFASLWQIPRDLGVVEGLFAGMVPTVVKGAVNSMIRFSIYERAKESVARALGADGDSTAVHMLS---GAMAGGVSAYVTHPIDTVKAQMMSLHGGSYGSSLECFLSVYRGGGVAALYCGITPRVIRVCMEVALQFALFEKISRIID 307
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A0M0JMT8_9EUKA (Tricarboxylate transport mitochondrial-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JMT8_9EUKA) HSP 1 Score: 223 bits (567), Expect = 6.210e-66 Identity = 137/307 (44.63%), Postives = 185/307 (60.26%), Query Frame = 3
Query: 66 KHPFLSGGIAGGLEILATFPLEYVKVQLQLREAVE----GGPRFKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVSGWLQK-------GGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGE-APDEALGPTASFG----LGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTDEILG 938
KHP +G IAG LEI T+P+E+VK QLQL++A G ++ P D A+T+R RG GLY G W+ FA PRSA+RF TF+ +SG + G V+T AAG +AG++E+A C TP Q I IKMT DA S R Y+G VHA+ + R +G+ GF+ GL P V KGA+ N IRF + + R +GE APD P + G TAGA+SAVV+ PIDTVK+N+ GL A + S C +++ + GV LF G+ PRV+RV +E+GLQFSL++++ R D LG
Sbjct: 3 KHPATAGWIAGTLEIGVTYPIEFVKTQLQLQQAASAMHAGADAYRGPFDVAARTVRERGVIGLYRGGASWVLFAGPRSAVRFGTFDALSGVSRSRDLPAKFGQSTVDT----AAGFIAGIVEAALCQTPNQVISIKMTHDA-SPRGPNQYQGMVHAIGCMYRADGL-LGFYAGLGPAVLKGAVTNSIRFLGFGRLK---RLIQGEPAPDGTPPPPLALWQAMLAGGTAGAISAVVSQPIDTVKANMMGLEAHRFRNSFSCLIELVRAGGVSCLFNGVAPRVVRVFIEVGLQFSLFESVSRMIDRHLG 300
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: W7T809_9STRA (Tricarboxylate transport mitochondrial-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T809_9STRA) HSP 1 Score: 215 bits (547), Expect = 9.670e-63 Identity = 126/288 (43.75%), Postives = 166/288 (57.64%), Query Frame = 3
Query: 183 FKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVS-------------GWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEAL------------------------GPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTDEIL 935
F P+DCV TLR +GP GLY GL PWL FA PRSA+RF+T+E VS G LQ G K++ ++AAG++AG +E TP+Q IQ+KM DA S+ + GFV A+ I R EG+ G + GL PTV KGA+NNCIRF ++E+ ++ + D L P + LGAT+G +SA+ THPIDTVKSN+Q LSA Y+ S +CF IL + G+ GL++G+ PR +RV LEIGL FSLY+ I DE L
Sbjct: 32 FTGPLDCVRFTLRTKGPLGLYKGLTPWLVFAFPRSAVRFSTYEFVSQRFRETVSKESQEGELQNG--KLDPYLSMAAGSIAGAVEFLTVGTPMQCIQVKMAHDAYSKVPR--FHGFVSAIVGIVRAEGLLKGLYAGLGPTVLKGAVNNCIRFSTFSELKYIYQKYKLNVADNRLTATFENFSTCPESDHFQAVHEAILNPLETMLLGATSGGLSAIATHPIDTVKSNMQSLSADKYTSSWNCFLSILRNQGLPGLYQGMAPRFVRVSLEIGLHFSLYEQIACRIDESL 315
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A7S4A3I2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3I2_9STRA) HSP 1 Score: 206 bits (525), Expect = 7.990e-60 Identity = 125/295 (42.37%), Postives = 163/295 (55.25%), Query Frame = 3
Query: 78 LSGGIAGGLEILATFPLEYVKVQLQLREAVEG-GPRFKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFE-------RVSGWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRG--FVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTDEI 932
L+GGIAG +EI T+PLEYVK +QL+ G G + I C QT++ G GLY G PW FA PRSA+RF FE R SGW G AG E+A C TP Q+IQIK+ DA+ + Y F A I R GI F+ GL P VAKGA+ NC+RF Y + RA G +E SFG GA AGA+SAV++ P+DTVK+N+ GL Y+ SLDC + I+ + GV L+ G PRV+RV E+GLQF+L+ + + D++
Sbjct: 14 LAGGIAGSMEIAVTYPLEYVKTNVQLQHGAAGTGSGYNGAIHCFRQTIKTNGLRGLYSGCAPWFAFAGPRSAVRFAAFEFLSKDAPRTSGW------------DFLCGLGAGACEAALCQTPNQSIQIKLLHDASPAVVEKRYSHLPFFRACAAIGRHHGI-LSFYDGLAPAVAKGALTNCVRFVGYK----GILRASGR--EENASAMESFGAGAVAGAISAVISQPVDTVKANMMGLDRGVYASSLDCARAIVKADGVRALWNGGGPRVVRVFFEVGLQFALFGEVSKLVDKL 289
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A0D2WJT2_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJT2_CAPO3) HSP 1 Score: 201 bits (512), Expect = 1.390e-57 Identity = 118/296 (39.86%), Postives = 165/296 (55.74%), Query Frame = 3
Query: 30 VVKTAIE--RRYKPKHPFLSGGIAGGLEILATFPLEYVKVQLQLREAVEGGPRFKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVSGWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTI 911
VV ++ R+ P L+GGI+GG+EIL TFP E+VK QLQL E P++K PI V T++ RG GLY GL L ++P+SAIRF +FE + GK+ TL L G AGV E+ + P++ I++K D N + YRGF H + I + EG AG + GL PT+ K N IRF +Y ++T ++ G + LG + GA AGA S PID VK+ +QGL Y + DC KQI + G ++G TPR+ RVCL++ + F+LY+ I
Sbjct: 16 VVPAPVDSGRKKTPGKAILAGGISGGIEILITFPTEFVKTQLQLDERA-AQPKYKGPIHVVTSTIKERGFFGLYRGLSSLLYGSIPKSAIRFASFEFFKNQIADKDGKLTTLQTLGCGLGAGVTEAIFAVCPMETIKVKFIHDQNQPQPK--YRGFAHGVSTIVKTEGF-AGIYQGLGPTILKQGSNQAIRFVVYGKITNWMK---GGDDSKKLGVLQTLSSGALAGAASVFGNTPIDVVKTRMQGLDRHKYKNAWDCTKQIWKNEGFFAFYKGTTPRLGRVCLDVAIVFTLYERI 304
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A1X7UGH5_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGH5_AMPQE) HSP 1 Score: 201 bits (511), Expect = 1.650e-57 Identity = 117/308 (37.99%), Postives = 169/308 (54.87%), Query Frame = 3
Query: 9 PCRNSGMVVKTAIERRYKPKHPFLSGGIAGGLEILATFPLEYVKVQLQLREAVEGGPRFKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVSGWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTDEI 932
P R+ +V A R P ++GGIAGGLEI+ TFP EYVK QLQL E PRFK P+ CV+ T++ G GLY GL L ++P++++RF+ FE + + G++ L AG AGV E+ + P++ I++K D Y+GF H +R I ++EGI G + GL PT+ K N IRF +Y + ++ G + +G + GATAGA S PID VK+ +QGL A Y + DC KQI + G ++G TPR+ RVC ++ L F+LY+ + R D +
Sbjct: 5 PARSVRSIVAAAPSDRKHPGKAIMAGGIAGGLEIMITFPTEYVKTQLQLDER-SAKPRFKGPLHCVSLTVKEHGVLGLYRGLSSLLYGSIPKASVRFSVFEFLKNRMSTETGRLTQPQRLLAGLGAGVSEAILIVCPMETIKVKFIHDQTQPNPK--YKGFFHGVRTIIKQEGI-RGTYQGLTPTILKQGSNQMIRFFVYENLKHWIQ---GGDYSKNIGTVKTALCGATAGAASVFGNTPIDVVKTRMQGLDAHKYKSTWDCVKQIARNEGFRAFYKGTTPRLGRVCADVALVFTLYEHVMRLLDYV 305
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A7S0CXV1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXV1_9EUKA) HSP 1 Score: 198 bits (503), Expect = 1.140e-56 Identity = 119/277 (42.96%), Postives = 157/277 (56.68%), Query Frame = 3
Query: 126 LEYVKVQLQL----REAVEGGPRFKDPIDCVA---QTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVS--GWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGS-LDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTD 926
+E+VKVQ QL R + G F + V+ +T+R GP GLY GL PWL F LPR A++F T+E ++ L++ L A+ G AG +E A TP+QN+ IKM D+N SR YR +HA+ I R EG GF+ G+ PTVAK ++NN IRF Y E+ G + + L S G G +SAVVT PIDTVK+N+Q LSA Y S L C ++I+ SG+VG +RGL PR+ RV LE L F+LYD R D
Sbjct: 1 MEFVKVQFQLLSPNRRSAAGAKSFTSKVGFVSIITETMRRSGPLGLYEGLTPWLVFTLPRCALKFATYEWLTEKANLRQHSHSTQGLGAMLCGAGAGGVEWAVAGTPMQNVSIKMLHDSNDGN-SRKYRSMIHAVASIWREEGFIRGFYSGILPTVAKASVNNGIRFAAYGEICKIFSSTNGLSGSKGLSTVESMVAGFLTGLISAVVTQPIDTVKTNMQSLSADRYDRSILGCCREIVRQSGLVGFYRGLGPRLCRVPLEQALLFTLYDRFGRILD 276
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: F0YN24_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN24_AURAN) HSP 1 Score: 195 bits (496), Expect = 2.210e-55 Identity = 120/289 (41.52%), Postives = 161/289 (55.71%), Query Frame = 3
Query: 78 LSGGIAGGLEILATFPLEYVKVQLQLREAVEGGPRFKDP--IDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVSGWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRG--FVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICRYTDEI 932
L+GG AG +EIL T+PLE+ K LQL+ G D + C+A T+ G G+Y G W FA PRSA+RF FER+S + G G AGV E+A C TP Q+IQIK+ DA ++ Y F+ A REI R+ G P F+ G+ P + KGA+ N IRF Y +T L G+ P A P S G AGAVSAV + P+DTVK+N+ GL Y+ SL C + I+ + G LF GL PRV+RV E+GLQF+L++ + D++
Sbjct: 22 LAGGWAGSMEILVTYPLEFAKTHLQLQHGAAGTKSGFDRGVVHCLASTVERHGVRGVYAGCTSWFVFAGPRSAVRFAAFERLSREAPRTSGW-----DFLCGLGAGVCEAALCQTPNQSIQIKLQHDAAPAVAAKRYSHLPFLRACREIARQHG-PLAFYDGVVPAMVKGALTNSIRFVGYRGLTRGLGLG-GDGP--APTPAQSMLCGGVAGAVSAVASQPVDTVKANMMGLDRGRYASSLACARAIVEADGAAALFNGLRPRVVRVFFEVGLQFALFEQCTKIVDDL 301
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Match: A0A8J7NYC8_ATRSP (TXTP protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NYC8_ATRSP) HSP 1 Score: 196 bits (499), Expect = 4.170e-55 Identity = 118/306 (38.56%), Postives = 168/306 (54.90%), Query Frame = 3
Query: 9 PCRNSGMVVKTAIERRYKPKHP---FLSGGIAGGLEILATFPLEYVKVQLQLREAVEGGPRFKDPIDCVAQTLRNRGPCGLYVGLPPWLTFALPRSAIRFTTFERVSGWLQKGGGKVNTLNALAAGTVAGVIESAACLTPLQNIQIKMTQDANSQRQSRIYRGFVHALREIPRREGIPAGFFGGLWPTVAKGAINNCIRFGLYNEMTGALRRARGEAPDEALGPTASFGLGATAGAVSAVVTHPIDTVKSNLQGLSARSYSGSLDCFKQILASSGVVGLFRGLTPRVIRVCLEIGLQFSLYDTICR 917
PC + A K HP L+GGIAGG+EI TFP EYVK QLQL E PR++ DCV T+++ G GLY GL L ++P+SA+RF TFE VS ++ G++++ +L G AGV E+ + P++ I++K D S R YRGF H +REI R +G+ G + GL TV K N IRF + MT +G+ P + P + GA AGA S P+D VK+ +QGL A Y ++DC QIL + G ++G PR+ RVCL++ + F +Y+ + +
Sbjct: 55 PCPGGRRALSAAAVGGRKVTHPGKAILAGGIAGGIEICITFPTEYVKTQLQLDERANP-PRYRGIGDCVRLTVQDHGLRGLYRGLSSLLYGSIPKSAVRFGTFELVSNPMRDAAGRLDSSRSLLCGLAAGVAEAVLVVCPMETIKVKFIHDQCSSRPR--YRGFFHGIREIIRDQGL-RGTYQGLTATVLKQGSNQAIRFYV---MTSLRNWYKGDDPCREMHPLVTAVFGAAAGAASVFGNTPLDVVKTRMQGLEAHRYRSTVDCAYQILRNEGPQAFYKGTVPRLGRVCLDVAIVFVIYEEVVK 353 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52.12549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig52.12549.1 >prot_H-paniculata_contig52.12549.1 ID=prot_H-paniculata_contig52.12549.1|Name=mRNA_H-paniculata_contig52.12549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp MVVKTAIERRYKPKHPFLSGGIAGGLEILATFPLEYVKVQLQLREAVEGGback to top mRNA from alignment at H-paniculata_contig52:38411..43397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig52.12549.1 ID=mRNA_H-paniculata_contig52.12549.1|Name=mRNA_H-paniculata_contig52.12549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4987bp|location=Sequence derived from alignment at H-paniculata_contig52:38411..43397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig52:38411..43397+ >mRNA_H-paniculata_contig52.12549.1 ID=mRNA_H-paniculata_contig52.12549.1|Name=mRNA_H-paniculata_contig52.12549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig52:38411..43397+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |