prot_H-paniculata_contig51992.12548.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig51992.12548.1
Unique Name	prot_H-paniculata_contig51992.12548.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	171

Homology

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.170e-47
Identity = 87/186 (46.77%), Postives = 110/186 (59.14%), Query Frame = 0

Query:    2 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHK--------------------------INKISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF 161
            LWHRR+GH++ +SLD+L+K   NGV ++G +  CDVCAVG S Q  HPK A +                           I K  D+H KW E +L+K K  T+ A Q F QSV  P   R+E +RADKGGE+    F  YC   G+ L +ASTNTPQ+IG +ER+GRTL  MVRC+L DSGLP F
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHF 453

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.500e-43
Identity = 82/203 (40.39%), Postives = 114/203 (56.16%), Query Frame = 0

Query:    2 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN--------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF-------TAAFLGNRAP 171
            LWHRR+GH+N KSLD+L+++  +G+ + G V DC  C +GKS Q  HPK A + ++                          K  D+HTKW E  L+K K  ++ A + F +   IP   RI  LRADKG E  +  ++ YC+  G+ L++AS NTP QIG +ER GRT++++VRCML DS LP         TA +L NR P
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTP 777

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.640e-43
Identity = 82/203 (40.39%), Postives = 114/203 (56.16%), Query Frame = 0

Query:    2 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN--------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF-------TAAFLGNRAP 171
            LWHRR+GH+N KSLD+L+++  +G+ + G V DC  C +GKS Q  HPK A + ++                          K  D+HTKW E  L+K K  ++ A + F +   IP   RI  LRADKG E  +  ++ YC+  G+ L++AS NTP QIG +ER GRT++++VRCML DS LP         TA +L NR P
Sbjct:  697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTP 899

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.660e-43
Identity = 82/203 (40.39%), Postives = 114/203 (56.16%), Query Frame = 0

Query:    2 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN--------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF-------TAAFLGNRAP 171
            LWHRR+GH+N KSLD+L+++  +G+ + G V DC  C +GKS Q  HPK A + ++                          K  D+HTKW E  L+K K  ++ A + F +   IP   RI  LRADKG E  +  ++ YC+  G+ L++AS NTP QIG +ER GRT++++VRCML DS LP         TA +L NR P
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTP 777

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 5.250e-42
Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 0

Query:    3 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLP 159
            WHRRLGHLN +SLD+L+K    GV +  ++  C VC + K  Q  HPK +  +++                             KI+D++TK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+    F+DYC  + + LEYA+TNTPQQIG+SE  G+TL  + RC+L D   P
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLLKDGDFP 230

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.900e-42
Identity = 83/205 (40.49%), Postives = 111/205 (54.15%), Query Frame = 0

Query:    3 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 171
            WHRRLGHLN +SLD+L+K    GV +  ++  C VC + K  Q  HPK +  +I+                             KI+D++TK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+    F+DYC  + + LEYA+TNTPQQIG SER G+TL  + RC+L D   P         TAA+L NR+P
Sbjct:  421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 625

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 6.620e-42
Identity = 81/205 (39.51%), Postives = 113/205 (55.12%), Query Frame = 0

Query:    3 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 171
            WHRRLGHLN +SLD+L+K    GV +  ++  C VC + K  Q +HPK + H+++                             KI+D+HTK  E YLL+ K D+  A  ++   V    G+R E +R DK GE+    F+DYC  + + LEYA+TNTPQQIG+SER G+TL  + RC+L+D   P         TAA+L NR+P
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQQIGVSERDGQTLAGVTRCLLEDGDFPPSMWGELMLTAAYLLNRSP 249

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BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 9.490e-42
Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 0

Query:    3 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 171
            WHRRLGHLN +SLD+L+K    GV +  ++  C VC + K  Q  HPK +  +++                             KI+D++TK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+    F+DYC  + + LEYA+TNTPQQIG+SER G+TL  + RC+L D   P         TAA+L NR+P
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 249

[Close]

BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.300e-41
Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 0

Query:    3 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 171
            WHRRLGHLN +SLD+L+K    GV +  ++  C VC + K  Q  HPK +  +++                             KI+D++TK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+    F+DYC  + + LEYA+TNTPQQIG+SER G+TL  + RC+L D   P         TAA+L NR+P
Sbjct:  241 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 445

[Close]

BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.350e-41
Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 0

Query:    3 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 171
            WHRRLGHLN +SLD+L+K    GV +  ++  C VC + K  Q  HPK +  +++                             KI+D++TK  E YLL+ K DT  A  ++   V    G+RIE +R DKGGE+    F+DYC  + + LEYA+TNTPQQIG+SER G+TL  + RC+L D   P         TAA+L NR+P
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 249

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	2.170e-47	46.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJN3_9PHAE	4.500e-43	40.39	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	4.640e-43	40.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	4.660e-43	40.39	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KZ34_9PHAE	5.250e-42	39.78	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KT84_9PHAE	5.900e-42	40.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFQ6_9PHAE	6.620e-42	39.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	9.490e-42	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JSL6_9PHAE	1.300e-41	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	1.350e-41	40.00	Integrase catalytic domain-containing protein n=11...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 2..43 e-value: 9.0E-9 score: 35.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 47..165 e-value: 5.6E-14 score: 53.9
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 56..146 e-value: 1.7E-8 score: 34.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 29..171 score: 10.575
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..57
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 61..160
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 2..57
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 61..160
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 59..159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig51992	contig	H-paniculata_contig51992:4..594 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig51992.12548.1	mRNA_H-paniculata_contig51992.12548.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig51992 4..594 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig51992.12548.1 ID=prot_H-paniculata_contig51992.12548.1|Name=mRNA_H-paniculata_contig51992.12548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
TLWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPK
MADHKINKISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERL
RADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVR
CMLDDSGLPKFTAAFLGNRAP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf