mRNA_H-paniculata_contig51992.12548.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.170e-47 Identity = 87/186 (46.77%), Postives = 110/186 (59.14%), Query Frame = 1
Query: 4 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHK--------------------------INKISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF 483
LWHRR+GH++ +SLD+L+K NGV ++G + CDVCAVG S Q HPK A + I K D+H KW E +L+K K T+ A Q F QSV P R+E +RADKGGE+ F YC G+ L +ASTNTPQ+IG +ER+GRTL MVRC+L DSGLP F
Sbjct: 268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHF 453
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 162 bits (410), Expect = 4.500e-43 Identity = 82/203 (40.39%), Postives = 114/203 (56.16%), Query Frame = 1
Query: 4 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN--------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF-------TAAFLGNRAP 513
LWHRR+GH+N KSLD+L+++ +G+ + G V DC C +GKS Q HPK A + ++ K D+HTKW E L+K K ++ A + F + IP RI LRADKG E + ++ YC+ G+ L++AS NTP QIG +ER GRT++++VRCML DS LP TA +L NR P
Sbjct: 575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTP 777
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 162 bits (410), Expect = 4.640e-43 Identity = 82/203 (40.39%), Postives = 114/203 (56.16%), Query Frame = 1
Query: 4 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN--------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF-------TAAFLGNRAP 513
LWHRR+GH+N KSLD+L+++ +G+ + G V DC C +GKS Q HPK A + ++ K D+HTKW E L+K K ++ A + F + IP RI LRADKG E + ++ YC+ G+ L++AS NTP QIG +ER GRT++++VRCML DS LP TA +L NR P
Sbjct: 697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTP 899
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 162 bits (410), Expect = 4.660e-43 Identity = 82/203 (40.39%), Postives = 114/203 (56.16%), Query Frame = 1
Query: 4 LWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN--------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPKF-------TAAFLGNRAP 513
LWHRR+GH+N KSLD+L+++ +G+ + G V DC C +GKS Q HPK A + ++ K D+HTKW E L+K K ++ A + F + IP RI LRADKG E + ++ YC+ G+ L++AS NTP QIG +ER GRT++++VRCML DS LP TA +L NR P
Sbjct: 575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTP 777
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 149 bits (376), Expect = 5.250e-42 Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 1
Query: 7 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLP 477
WHRRLGHLN +SLD+L+K GV + ++ C VC + K Q HPK + +++ KI+D++TK E YLL+ K DT A ++ V G+RIE +R DKGGE+ F+DYC + + LEYA+TNTPQQIG+SE G+TL + RC+L D P
Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLLKDGDFP 230
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 158 bits (399), Expect = 5.900e-42 Identity = 83/205 (40.49%), Postives = 111/205 (54.15%), Query Frame = 1
Query: 7 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 513
WHRRLGHLN +SLD+L+K GV + ++ C VC + K Q HPK + +I+ KI+D++TK E YLL+ K DT A ++ V G+RIE +R DKGGE+ F+DYC + + LEYA+TNTPQQIG SER G+TL + RC+L D P TAA+L NR+P
Sbjct: 421 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 625
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 6.620e-42 Identity = 81/205 (39.51%), Postives = 113/205 (55.12%), Query Frame = 1
Query: 7 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 513
WHRRLGHLN +SLD+L+K GV + ++ C VC + K Q +HPK + H+++ KI+D+HTK E YLL+ K D+ A ++ V G+R E +R DK GE+ F+DYC + + LEYA+TNTPQQIG+SER G+TL + RC+L+D P TAA+L NR+P
Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQQIGVSERDGQTLAGVTRCLLEDGDFPPSMWGELMLTAAYLLNRSP 249
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 158 bits (399), Expect = 9.490e-42 Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 1
Query: 7 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 513
WHRRLGHLN +SLD+L+K GV + ++ C VC + K Q HPK + +++ KI+D++TK E YLL+ K DT A ++ V G+RIE +R DKGGE+ F+DYC + + LEYA+TNTPQQIG+SER G+TL + RC+L D P TAA+L NR+P
Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 249
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.300e-41 Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 1
Query: 7 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 513
WHRRLGHLN +SLD+L+K GV + ++ C VC + K Q HPK + +++ KI+D++TK E YLL+ K DT A ++ V G+RIE +R DKGGE+ F+DYC + + LEYA+TNTPQQIG+SER G+TL + RC+L D P TAA+L NR+P
Sbjct: 241 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 445
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.350e-41 Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 1
Query: 7 WHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKMADHKIN-----------------------------KISDEHTKWTETYLLKSKGDTLSAFQSFVQSVEIPSGFRIERLRADKGGEHIDKGFKDYCVQTGMSLEYASTNTPQQIGMSERVGRTLVSMVRCMLDDSGLPK-------FTAAFLGNRAP 513
WHRRLGHLN +SLD+L+K GV + ++ C VC + K Q HPK + +++ KI+D++TK E YLL+ K DT A ++ V G+RIE +R DKGGE+ F+DYC + + LEYA+TNTPQQIG+SER G+TL + RC+L D P TAA+L NR+P
Sbjct: 45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSP 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51992.12548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig51992.12548.1 >prot_H-paniculata_contig51992.12548.1 ID=prot_H-paniculata_contig51992.12548.1|Name=mRNA_H-paniculata_contig51992.12548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp TLWHRRLGHLNRKSLDLLKKRGHNGVSFDGTVPDCDVCAVGKSHQLAHPKback to top mRNA from alignment at H-paniculata_contig51992:4..594+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig51992.12548.1 ID=mRNA_H-paniculata_contig51992.12548.1|Name=mRNA_H-paniculata_contig51992.12548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig51992:4..594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig51992:4..594+ >mRNA_H-paniculata_contig51992.12548.1 ID=mRNA_H-paniculata_contig51992.12548.1|Name=mRNA_H-paniculata_contig51992.12548.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig51992:4..594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |