mRNA_H-paniculata_contig51986.12544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51986.12544.1
Unique NamemRNA_H-paniculata_contig51986.12544.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51986.12544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51986contigH-paniculata_contig51986:617..742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.902397-CDS-H-paniculata_contig51986:616..7361622930514.902397-CDS-H-paniculata_contig51986:616..736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51986 617..736 -
1691481326.8128495-CDS-H-paniculata_contig51986:616..7361691481326.8128495-CDS-H-paniculata_contig51986:616..736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51986 617..736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.916526-UTR-H-paniculata_contig51986:736..7421622930514.916526-UTR-H-paniculata_contig51986:736..742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51986 737..742 -
1691481326.8208637-UTR-H-paniculata_contig51986:736..7421691481326.8208637-UTR-H-paniculata_contig51986:736..742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51986 737..742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51986.12544.1prot_H-paniculata_contig51986.12544.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51986 617..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51986.12544.1

>prot_H-paniculata_contig51986.12544.1 ID=prot_H-paniculata_contig51986.12544.1|Name=mRNA_H-paniculata_contig51986.12544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
MGVWVDQDSSTYSDQGEDVLYRIVVSNDGTVTLQDIVLTD
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mRNA from alignment at H-paniculata_contig51986:617..742-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51986.12544.1 ID=mRNA_H-paniculata_contig51986.12544.1|Name=mRNA_H-paniculata_contig51986.12544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at H-paniculata_contig51986:617..742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAGATGGGAGTGTGGGTGGACCAAGACTCCAGCACGTACTCCGACCA
AGGCGAAGATGTATTGTACCGGATCGTCGTCAGCAATGACGGGACGGTGA
CGTTGCAGGACATTGTTCTAACGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig51986:617..742-

>mRNA_H-paniculata_contig51986.12544.1 ID=mRNA_H-paniculata_contig51986.12544.1|Name=mRNA_H-paniculata_contig51986.12544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig51986:617..742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGTGTGGGTGGACCAAGACTCCAGCACGTACTCCGACCAAGGCGA
AGATGTATTGTACCGGATCGTCGTCAGCAATGACGGGACGGTGACGTTGC
AGGACATTGTTCTAACGGACATGGGAGTGTGGGTGGACCAAGACTCCAGC
ACGTACTCCGACCAAGGCGAAGATGTATTGTACCGGATCGTCGTCAGCAA
TGACGGGACGGTGACGTTGCAGGACATTGTTCTAACGGAC
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