mRNA_H-paniculata_contig5192.12535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5192.12535.1
Unique NamemRNA_H-paniculata_contig5192.12535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5192.12535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5192contigH-paniculata_contig5192:8050..8556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5192.12535.1prot_H-paniculata_contig5192.12535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5192 8069..8407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.8851974-UTR-H-paniculata_contig5192:8049..80681622930513.8851974-UTR-H-paniculata_contig5192:8049..8068Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5192 8050..8068 +
1691481326.395248-UTR-H-paniculata_contig5192:8049..80681691481326.395248-UTR-H-paniculata_contig5192:8049..8068Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5192 8050..8068 +
1622930513.9205592-UTR-H-paniculata_contig5192:8407..85561622930513.9205592-UTR-H-paniculata_contig5192:8407..8556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5192 8408..8556 +
1691481326.4158194-UTR-H-paniculata_contig5192:8407..85561691481326.4158194-UTR-H-paniculata_contig5192:8407..8556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5192 8408..8556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930513.9041245-CDS-H-paniculata_contig5192:8068..84071622930513.9041245-CDS-H-paniculata_contig5192:8068..8407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5192 8069..8407 +
1691481326.407501-CDS-H-paniculata_contig5192:8068..84071691481326.407501-CDS-H-paniculata_contig5192:8068..8407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5192 8069..8407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5192.12535.1

>prot_H-paniculata_contig5192.12535.1 ID=prot_H-paniculata_contig5192.12535.1|Name=mRNA_H-paniculata_contig5192.12535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MAGGTGVGERLDRYDSCPAPPPVPRLLPPVQPHTGALVCYTKPYVKITSL
VKSLLVLPIVPLLLRLPEKWTGGPHCPSVNYYDSCCAWPMEEFDVARIRL
LVVVLLRPFFSN*
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mRNA from alignment at H-paniculata_contig5192:8050..8556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5192.12535.1 ID=mRNA_H-paniculata_contig5192.12535.1|Name=mRNA_H-paniculata_contig5192.12535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig5192:8050..8556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGAAGTAGCGAGATGGATGGCTGGAGGCACTGGGGTTGGCGAGAGGC
TTGATAGATACGACTCTTGTCCCGCCCCGCCTCCTGTCCCCCGCCTCCTG
CCCCCTGTGCAACCACACACTGGTGCGCTTGTATGTTATACTAAACCTTA
TGTGAAGATTACGTCCTTGGTTAAATCCTTGTTGGTGTTGCCCATTGTCC
CTCTCCTTCTCCGTTTGCCGGAGAAGTGGACAGGTGGCCCGCATTGCCCT
TCTGTGAACTATTATGATAGCTGCTGTGCTTGGCCCATGGAAGAATTTGA
CGTTGCCCGAATCAGGTTGCTGGTCGTGGTGCTGCTGCGCCCATTTTTTT
CGAATTAATAGTGTGTATTCAAAAAGTGTAACTACCGCACACGACATTCG
TTCATACGGCCATAATGTGACTATACGCCGGTTCCATGATACACGAGTGT
ACCCACTATGATGTATCTTAAATGAGGTGCTACATTTCCATGTTTCGTCG
GTGGTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5192:8050..8556+

>mRNA_H-paniculata_contig5192.12535.1 ID=mRNA_H-paniculata_contig5192.12535.1|Name=mRNA_H-paniculata_contig5192.12535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig5192:8050..8556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGAGGCACTGGGGTTGGCGAGAGGCTTGATAGATACGACTCTTG
TCCCGCCCCGCCTCCTGTCCCCCGCCTCCTGCCCCCTGTGCAACCACACA
CTGGTGCGCTTGTATGTTATACTAAACCTTATGTGAAGATTACGTCCTTG
GTTAAATCCTTGTTGGTGTTGCCCATTGTCCCTCTCCTTCTCCGTTTGCC
GGAGAAGTGGACAGGTGGCCCGCATTGCCCTTCTGTGAACTATTATGATA
GCTGCTGTGCTTGGCCCATGGAAGAATTTGACGTTGCCCGAATCAGGTTG
CTGGTCGTGGTGCTGCTGCGCCCATTTTTTTCGAATTAAATGGCTGGAGG
CACTGGGGTTGGCGAGAGGCTTGATAGATACGACTCTTGTCCCGCCCCGC
CTCCTGTCCCCCGCCTCCTGCCCCCTGTGCAACCACACACTGGTGCGCTT
GTATGTTATACTAAACCTTATGTGAAGATTACGTCCTTGGTTAAATCCTT
GTTGGTGTTGCCCATTGTCCCTCTCCTTCTCCGTTTGCCGGAGAAGTGGA
CAGGTGGCCCGCATTGCCCTTCTGTGAACTATTATGATAGCTGCTGTGCT
TGGCCCATGGAAGAATTTGACGTTGCCCGAATCAGGTTGCTGGTCGTGGT
GCTGCTGCGCCCATTTTTTTCGAATTAA
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